Strain Fitness in Bosea sp. OAE506 around ABIE41_RS00985

Experiment: R2A no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS00980 and ABIE41_RS00985 are separated by 298 nucleotidesABIE41_RS00985 and ABIE41_RS00990 overlap by 4 nucleotides ABIE41_RS00980: ABIE41_RS00980 - hypothetical protein, at 186,605 to 187,054 _RS00980 ABIE41_RS00985: ABIE41_RS00985 - NAD-dependent epimerase/dehydratase family protein, at 187,353 to 188,456 _RS00985 ABIE41_RS00990: ABIE41_RS00990 - NAD-dependent epimerase/dehydratase family protein, at 188,453 to 190,510 _RS00990 Position (kb) 187 188 189Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 186.353 kb on - strandat 186.353 kb on - strandat 186.498 kb on + strandat 186.498 kb on + strandat 186.498 kb on + strandat 186.498 kb on + strandat 186.498 kb on + strandat 186.499 kb on - strandat 186.499 kb on - strandat 186.499 kb on - strandat 186.499 kb on - strandat 186.499 kb on - strandat 186.499 kb on - strandat 186.551 kb on + strandat 186.551 kb on + strandat 186.552 kb on - strandat 186.552 kb on - strandat 186.552 kb on - strandat 186.740 kb on + strand, within ABIE41_RS00980at 186.919 kb on + strand, within ABIE41_RS00980at 186.919 kb on + strand, within ABIE41_RS00980at 187.035 kb on + strandat 187.035 kb on + strandat 187.036 kb on - strandat 187.100 kb on + strandat 187.127 kb on + strandat 187.127 kb on + strandat 187.127 kb on + strandat 187.128 kb on - strandat 187.128 kb on - strandat 187.128 kb on - strandat 187.128 kb on - strandat 187.128 kb on - strandat 187.128 kb on - strandat 187.128 kb on - strandat 187.270 kb on + strandat 187.478 kb on + strand, within ABIE41_RS00985at 187.611 kb on + strand, within ABIE41_RS00985at 187.611 kb on + strand, within ABIE41_RS00985at 187.611 kb on + strand, within ABIE41_RS00985at 187.611 kb on + strand, within ABIE41_RS00985at 187.612 kb on - strand, within ABIE41_RS00985at 187.626 kb on + strand, within ABIE41_RS00985at 187.626 kb on + strand, within ABIE41_RS00985at 187.626 kb on + strand, within ABIE41_RS00985at 187.626 kb on + strand, within ABIE41_RS00985at 187.626 kb on + strand, within ABIE41_RS00985at 187.627 kb on - strand, within ABIE41_RS00985at 187.627 kb on - strand, within ABIE41_RS00985at 187.627 kb on - strand, within ABIE41_RS00985at 187.722 kb on + strand, within ABIE41_RS00985at 187.737 kb on + strand, within ABIE41_RS00985at 187.737 kb on + strand, within ABIE41_RS00985at 187.737 kb on + strand, within ABIE41_RS00985at 187.737 kb on + strand, within ABIE41_RS00985at 187.737 kb on + strand, within ABIE41_RS00985at 187.738 kb on - strand, within ABIE41_RS00985at 187.738 kb on - strand, within ABIE41_RS00985at 187.738 kb on - strand, within ABIE41_RS00985at 187.884 kb on + strand, within ABIE41_RS00985at 187.884 kb on + strand, within ABIE41_RS00985at 187.884 kb on + strand, within ABIE41_RS00985at 187.885 kb on - strand, within ABIE41_RS00985at 187.885 kb on - strand, within ABIE41_RS00985at 187.899 kb on + strand, within ABIE41_RS00985at 187.899 kb on + strand, within ABIE41_RS00985at 187.899 kb on + strand, within ABIE41_RS00985at 187.900 kb on - strand, within ABIE41_RS00985at 187.900 kb on - strand, within ABIE41_RS00985at 187.900 kb on - strand, within ABIE41_RS00985at 187.900 kb on - strand, within ABIE41_RS00985at 187.938 kb on + strand, within ABIE41_RS00985at 187.939 kb on - strand, within ABIE41_RS00985at 188.007 kb on + strand, within ABIE41_RS00985at 188.008 kb on - strand, within ABIE41_RS00985at 188.118 kb on - strand, within ABIE41_RS00985at 188.171 kb on + strand, within ABIE41_RS00985at 188.171 kb on + strand, within ABIE41_RS00985at 188.172 kb on - strand, within ABIE41_RS00985at 188.178 kb on - strand, within ABIE41_RS00985at 188.190 kb on + strand, within ABIE41_RS00985at 188.191 kb on - strand, within ABIE41_RS00985at 188.191 kb on - strand, within ABIE41_RS00985at 188.264 kb on + strand, within ABIE41_RS00985at 188.264 kb on + strand, within ABIE41_RS00985at 188.264 kb on + strand, within ABIE41_RS00985at 188.264 kb on + strand, within ABIE41_RS00985at 188.265 kb on - strand, within ABIE41_RS00985at 188.265 kb on - strand, within ABIE41_RS00985at 188.332 kb on - strand, within ABIE41_RS00985at 188.535 kb on + strandat 188.536 kb on - strandat 188.536 kb on - strandat 188.606 kb on + strandat 188.607 kb on - strandat 188.634 kb on - strandat 188.634 kb on - strandat 188.690 kb on + strand, within ABIE41_RS00990at 188.690 kb on + strand, within ABIE41_RS00990at 188.691 kb on - strand, within ABIE41_RS00990at 188.691 kb on - strand, within ABIE41_RS00990at 188.753 kb on + strand, within ABIE41_RS00990at 188.753 kb on + strand, within ABIE41_RS00990at 188.754 kb on - strand, within ABIE41_RS00990at 188.754 kb on - strand, within ABIE41_RS00990at 188.894 kb on - strand, within ABIE41_RS00990at 188.903 kb on + strand, within ABIE41_RS00990at 188.904 kb on - strand, within ABIE41_RS00990at 189.071 kb on + strand, within ABIE41_RS00990at 189.083 kb on - strand, within ABIE41_RS00990at 189.230 kb on + strand, within ABIE41_RS00990at 189.230 kb on + strand, within ABIE41_RS00990at 189.230 kb on + strand, within ABIE41_RS00990at 189.230 kb on + strand, within ABIE41_RS00990at 189.230 kb on + strand, within ABIE41_RS00990at 189.230 kb on + strand, within ABIE41_RS00990at 189.230 kb on + strand, within ABIE41_RS00990at 189.231 kb on - strand, within ABIE41_RS00990at 189.231 kb on - strand, within ABIE41_RS00990at 189.231 kb on - strand, within ABIE41_RS00990at 189.236 kb on + strand, within ABIE41_RS00990at 189.237 kb on - strand, within ABIE41_RS00990at 189.237 kb on - strand, within ABIE41_RS00990at 189.237 kb on - strand, within ABIE41_RS00990at 189.237 kb on - strand, within ABIE41_RS00990at 189.284 kb on + strand, within ABIE41_RS00990at 189.284 kb on + strand, within ABIE41_RS00990at 189.302 kb on + strand, within ABIE41_RS00990at 189.302 kb on + strand, within ABIE41_RS00990at 189.303 kb on - strand, within ABIE41_RS00990at 189.390 kb on + strand, within ABIE41_RS00990at 189.390 kb on + strand, within ABIE41_RS00990at 189.390 kb on + strand, within ABIE41_RS00990at 189.391 kb on - strand, within ABIE41_RS00990at 189.391 kb on - strand, within ABIE41_RS00990at 189.391 kb on - strand, within ABIE41_RS00990at 189.391 kb on - strand, within ABIE41_RS00990at 189.391 kb on - strand, within ABIE41_RS00990at 189.391 kb on - strand, within ABIE41_RS00990at 189.391 kb on - strand, within ABIE41_RS00990at 189.429 kb on + strand, within ABIE41_RS00990at 189.430 kb on - strand, within ABIE41_RS00990

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A no stress control
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186,353 - -0.4
186,353 - -0.1
186,498 + -0.5
186,498 + -0.5
186,498 + -1.1
186,498 + -0.6
186,498 + +0.3
186,499 - -1.1
186,499 - -1.6
186,499 - -3.1
186,499 - -1.6
186,499 - -1.3
186,499 - +2.5
186,551 + -0.3
186,551 + +0.7
186,552 - -0.2
186,552 - +0.5
186,552 - -1.1
186,740 + ABIE41_RS00980 0.30 +0.0
186,919 + ABIE41_RS00980 0.70 +0.2
186,919 + ABIE41_RS00980 0.70 -0.0
187,035 + +0.3
187,035 + -0.1
187,036 - -0.1
187,100 + -0.8
187,127 + +0.9
187,127 + +2.5
187,127 + +0.3
187,128 - -0.5
187,128 - -0.7
187,128 - -0.4
187,128 - -1.6
187,128 - +0.3
187,128 - -0.3
187,128 - -2.5
187,270 + -0.6
187,478 + ABIE41_RS00985 0.11 -0.3
187,611 + ABIE41_RS00985 0.23 +0.4
187,611 + ABIE41_RS00985 0.23 -0.2
187,611 + ABIE41_RS00985 0.23 -0.0
187,611 + ABIE41_RS00985 0.23 +0.5
187,612 - ABIE41_RS00985 0.23 -1.1
187,626 + ABIE41_RS00985 0.25 -0.1
187,626 + ABIE41_RS00985 0.25 +1.8
187,626 + ABIE41_RS00985 0.25 +0.0
187,626 + ABIE41_RS00985 0.25 +1.1
187,626 + ABIE41_RS00985 0.25 +1.3
187,627 - ABIE41_RS00985 0.25 +0.3
187,627 - ABIE41_RS00985 0.25 +0.4
187,627 - ABIE41_RS00985 0.25 +0.1
187,722 + ABIE41_RS00985 0.33 +0.1
187,737 + ABIE41_RS00985 0.35 +2.3
187,737 + ABIE41_RS00985 0.35 -0.5
187,737 + ABIE41_RS00985 0.35 +0.3
187,737 + ABIE41_RS00985 0.35 +0.5
187,737 + ABIE41_RS00985 0.35 -1.6
187,738 - ABIE41_RS00985 0.35 -0.9
187,738 - ABIE41_RS00985 0.35 +1.1
187,738 - ABIE41_RS00985 0.35 -1.8
187,884 + ABIE41_RS00985 0.48 +0.1
187,884 + ABIE41_RS00985 0.48 +0.7
187,884 + ABIE41_RS00985 0.48 +0.6
187,885 - ABIE41_RS00985 0.48 -0.4
187,885 - ABIE41_RS00985 0.48 +1.2
187,899 + ABIE41_RS00985 0.49 +0.9
187,899 + ABIE41_RS00985 0.49 +0.8
187,899 + ABIE41_RS00985 0.49 +0.3
187,900 - ABIE41_RS00985 0.50 +0.0
187,900 - ABIE41_RS00985 0.50 -0.1
187,900 - ABIE41_RS00985 0.50 +0.5
187,900 - ABIE41_RS00985 0.50 +0.4
187,938 + ABIE41_RS00985 0.53 +0.3
187,939 - ABIE41_RS00985 0.53 +0.9
188,007 + ABIE41_RS00985 0.59 +0.6
188,008 - ABIE41_RS00985 0.59 +0.3
188,118 - ABIE41_RS00985 0.69 -0.3
188,171 + ABIE41_RS00985 0.74 +0.5
188,171 + ABIE41_RS00985 0.74 +0.4
188,172 - ABIE41_RS00985 0.74 +0.1
188,178 - ABIE41_RS00985 0.75 +0.3
188,190 + ABIE41_RS00985 0.76 +0.5
188,191 - ABIE41_RS00985 0.76 +1.0
188,191 - ABIE41_RS00985 0.76 -0.5
188,264 + ABIE41_RS00985 0.83 -0.4
188,264 + ABIE41_RS00985 0.83 -0.3
188,264 + ABIE41_RS00985 0.83 -0.2
188,264 + ABIE41_RS00985 0.83 -0.6
188,265 - ABIE41_RS00985 0.83 -0.6
188,265 - ABIE41_RS00985 0.83 -1.0
188,332 - ABIE41_RS00985 0.89 -0.2
188,535 + -2.0
188,536 - -0.5
188,536 - +1.6
188,606 + +0.1
188,607 - -0.5
188,634 - -0.9
188,634 - -0.1
188,690 + ABIE41_RS00990 0.12 -2.0
188,690 + ABIE41_RS00990 0.12 -0.5
188,691 - ABIE41_RS00990 0.12 +1.9
188,691 - ABIE41_RS00990 0.12 +0.2
188,753 + ABIE41_RS00990 0.15 -0.0
188,753 + ABIE41_RS00990 0.15 -0.2
188,754 - ABIE41_RS00990 0.15 -0.0
188,754 - ABIE41_RS00990 0.15 +1.0
188,894 - ABIE41_RS00990 0.21 -0.3
188,903 + ABIE41_RS00990 0.22 -0.9
188,904 - ABIE41_RS00990 0.22 -0.9
189,071 + ABIE41_RS00990 0.30 +0.1
189,083 - ABIE41_RS00990 0.31 +0.4
189,230 + ABIE41_RS00990 0.38 -1.9
189,230 + ABIE41_RS00990 0.38 -1.7
189,230 + ABIE41_RS00990 0.38 -0.0
189,230 + ABIE41_RS00990 0.38 +0.2
189,230 + ABIE41_RS00990 0.38 +0.7
189,230 + ABIE41_RS00990 0.38 +0.1
189,230 + ABIE41_RS00990 0.38 -0.4
189,231 - ABIE41_RS00990 0.38 +0.3
189,231 - ABIE41_RS00990 0.38 -2.5
189,231 - ABIE41_RS00990 0.38 -0.4
189,236 + ABIE41_RS00990 0.38 +1.9
189,237 - ABIE41_RS00990 0.38 -0.1
189,237 - ABIE41_RS00990 0.38 -0.5
189,237 - ABIE41_RS00990 0.38 +0.5
189,237 - ABIE41_RS00990 0.38 +0.6
189,284 + ABIE41_RS00990 0.40 +0.9
189,284 + ABIE41_RS00990 0.40 +0.4
189,302 + ABIE41_RS00990 0.41 -0.6
189,302 + ABIE41_RS00990 0.41 -0.4
189,303 - ABIE41_RS00990 0.41 -0.7
189,390 + ABIE41_RS00990 0.46 +0.5
189,390 + ABIE41_RS00990 0.46 -1.1
189,390 + ABIE41_RS00990 0.46 +0.1
189,391 - ABIE41_RS00990 0.46 -0.6
189,391 - ABIE41_RS00990 0.46 +0.4
189,391 - ABIE41_RS00990 0.46 +0.6
189,391 - ABIE41_RS00990 0.46 +0.3
189,391 - ABIE41_RS00990 0.46 -0.7
189,391 - ABIE41_RS00990 0.46 -1.3
189,391 - ABIE41_RS00990 0.46 -0.7
189,429 + ABIE41_RS00990 0.47 -0.3
189,430 - ABIE41_RS00990 0.47 -0.7

Or see this region's nucleotide sequence