Strain Fitness in Pseudomonas sp. RS175 around PFR28_04769

Experiment: methyl-trans-p-coumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04768 and PFR28_04769 are separated by 143 nucleotidesPFR28_04769 and PFR28_04770 are separated by 88 nucleotidesPFR28_04770 and PFR28_04771 are separated by 31 nucleotides PFR28_04768: PFR28_04768 - Fructose dehydrogenase large subunit, at 5,427,686 to 5,429,905 _04768 PFR28_04769: PFR28_04769 - hypothetical protein, at 5,430,049 to 5,430,573 _04769 PFR28_04770: PFR28_04770 - CRP-like cAMP-activated global transcriptional regulator, at 5,430,662 to 5,431,348 _04770 PFR28_04771: PFR28_04771 - putative HTH-type transcriptional regulator, at 5,431,380 to 5,432,384 _04771 Position (kb) 5430 5431Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5429.111 kb on + strand, within PFR28_04768at 5429.111 kb on + strand, within PFR28_04768at 5429.111 kb on + strand, within PFR28_04768at 5429.111 kb on + strand, within PFR28_04768at 5429.111 kb on + strand, within PFR28_04768at 5429.111 kb on + strand, within PFR28_04768at 5429.112 kb on - strand, within PFR28_04768at 5429.112 kb on - strand, within PFR28_04768at 5429.112 kb on - strand, within PFR28_04768at 5429.112 kb on - strand, within PFR28_04768at 5429.132 kb on + strand, within PFR28_04768at 5429.172 kb on - strand, within PFR28_04768at 5429.186 kb on + strand, within PFR28_04768at 5429.186 kb on + strand, within PFR28_04768at 5429.186 kb on + strand, within PFR28_04768at 5429.186 kb on + strand, within PFR28_04768at 5429.186 kb on + strand, within PFR28_04768at 5429.186 kb on + strand, within PFR28_04768at 5429.187 kb on - strand, within PFR28_04768at 5429.187 kb on - strand, within PFR28_04768at 5429.187 kb on - strand, within PFR28_04768at 5429.187 kb on - strand, within PFR28_04768at 5429.187 kb on - strand, within PFR28_04768at 5429.233 kb on + strand, within PFR28_04768at 5429.234 kb on - strand, within PFR28_04768at 5429.294 kb on + strand, within PFR28_04768at 5429.308 kb on + strand, within PFR28_04768at 5429.308 kb on + strand, within PFR28_04768at 5429.308 kb on + strand, within PFR28_04768at 5429.308 kb on + strand, within PFR28_04768at 5429.308 kb on + strand, within PFR28_04768at 5429.309 kb on - strand, within PFR28_04768at 5429.309 kb on - strand, within PFR28_04768at 5429.309 kb on - strand, within PFR28_04768at 5429.341 kb on + strand, within PFR28_04768at 5429.342 kb on - strand, within PFR28_04768at 5429.342 kb on - strand, within PFR28_04768at 5429.342 kb on - strand, within PFR28_04768at 5429.342 kb on - strand, within PFR28_04768at 5429.346 kb on - strand, within PFR28_04768at 5429.346 kb on - strand, within PFR28_04768at 5429.346 kb on - strand, within PFR28_04768at 5429.346 kb on - strand, within PFR28_04768at 5429.346 kb on - strand, within PFR28_04768at 5429.346 kb on - strand, within PFR28_04768at 5429.609 kb on + strand, within PFR28_04768at 5429.610 kb on - strand, within PFR28_04768at 5429.622 kb on + strand, within PFR28_04768at 5429.622 kb on + strand, within PFR28_04768at 5429.623 kb on - strand, within PFR28_04768at 5429.623 kb on - strand, within PFR28_04768at 5429.685 kb on - strandat 5429.693 kb on + strandat 5429.693 kb on + strandat 5429.693 kb on + strandat 5429.693 kb on + strandat 5429.693 kb on + strandat 5429.693 kb on + strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.694 kb on - strandat 5429.903 kb on + strandat 5429.925 kb on - strandat 5430.218 kb on + strand, within PFR28_04769at 5430.219 kb on - strand, within PFR28_04769at 5430.219 kb on - strand, within PFR28_04769at 5430.219 kb on - strand, within PFR28_04769at 5430.219 kb on - strand, within PFR28_04769at 5430.219 kb on - strand, within PFR28_04769at 5430.222 kb on - strand, within PFR28_04769at 5430.283 kb on + strand, within PFR28_04769at 5430.284 kb on - strand, within PFR28_04769at 5430.284 kb on - strand, within PFR28_04769at 5430.284 kb on - strand, within PFR28_04769at 5430.284 kb on - strand, within PFR28_04769at 5430.340 kb on + strand, within PFR28_04769at 5430.340 kb on + strand, within PFR28_04769at 5430.341 kb on - strand, within PFR28_04769at 5430.380 kb on + strand, within PFR28_04769at 5430.381 kb on - strand, within PFR28_04769at 5430.533 kb on + strandat 5430.533 kb on + strandat 5430.533 kb on + strandat 5430.533 kb on + strandat 5430.533 kb on + strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.534 kb on - strandat 5430.542 kb on + strandat 5430.543 kb on - strandat 5430.543 kb on - strandat 5430.636 kb on + strandat 5430.684 kb on + strandat 5430.684 kb on + strandat 5430.685 kb on - strandat 5430.685 kb on - strandat 5430.685 kb on - strandat 5430.707 kb on + strandat 5430.707 kb on + strandat 5430.729 kb on + strandat 5430.730 kb on - strandat 5430.730 kb on - strandat 5430.737 kb on - strand, within PFR28_04770at 5430.737 kb on - strand, within PFR28_04770at 5430.818 kb on + strand, within PFR28_04770at 5430.818 kb on + strand, within PFR28_04770at 5430.819 kb on - strand, within PFR28_04770at 5430.819 kb on - strand, within PFR28_04770at 5431.032 kb on - strand, within PFR28_04770at 5431.221 kb on + strand, within PFR28_04770at 5431.222 kb on - strand, within PFR28_04770

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl-trans-p-coumarate (C)
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5,429,111 + PFR28_04768 0.64 -0.0
5,429,111 + PFR28_04768 0.64 -1.1
5,429,111 + PFR28_04768 0.64 -2.6
5,429,111 + PFR28_04768 0.64 +0.3
5,429,111 + PFR28_04768 0.64 -1.8
5,429,111 + PFR28_04768 0.64 -0.6
5,429,112 - PFR28_04768 0.64 +0.2
5,429,112 - PFR28_04768 0.64 +0.3
5,429,112 - PFR28_04768 0.64 +0.3
5,429,112 - PFR28_04768 0.64 +0.2
5,429,132 + PFR28_04768 0.65 +0.2
5,429,172 - PFR28_04768 0.67 +1.0
5,429,186 + PFR28_04768 0.68 -1.4
5,429,186 + PFR28_04768 0.68 -0.4
5,429,186 + PFR28_04768 0.68 -0.1
5,429,186 + PFR28_04768 0.68 +0.4
5,429,186 + PFR28_04768 0.68 +0.9
5,429,186 + PFR28_04768 0.68 +3.9
5,429,187 - PFR28_04768 0.68 -2.0
5,429,187 - PFR28_04768 0.68 +1.1
5,429,187 - PFR28_04768 0.68 -0.1
5,429,187 - PFR28_04768 0.68 -0.2
5,429,187 - PFR28_04768 0.68 -0.9
5,429,233 + PFR28_04768 0.70 -0.5
5,429,234 - PFR28_04768 0.70 -0.5
5,429,294 + PFR28_04768 0.72 +1.8
5,429,308 + PFR28_04768 0.73 -0.8
5,429,308 + PFR28_04768 0.73 +1.6
5,429,308 + PFR28_04768 0.73 -0.7
5,429,308 + PFR28_04768 0.73 -1.5
5,429,308 + PFR28_04768 0.73 +0.9
5,429,309 - PFR28_04768 0.73 -0.6
5,429,309 - PFR28_04768 0.73 +0.4
5,429,309 - PFR28_04768 0.73 -0.3
5,429,341 + PFR28_04768 0.75 +0.7
5,429,342 - PFR28_04768 0.75 +0.1
5,429,342 - PFR28_04768 0.75 +0.7
5,429,342 - PFR28_04768 0.75 +1.5
5,429,342 - PFR28_04768 0.75 +1.5
5,429,346 - PFR28_04768 0.75 +1.6
5,429,346 - PFR28_04768 0.75 +2.6
5,429,346 - PFR28_04768 0.75 -1.0
5,429,346 - PFR28_04768 0.75 -0.3
5,429,346 - PFR28_04768 0.75 +0.6
5,429,346 - PFR28_04768 0.75 -1.2
5,429,609 + PFR28_04768 0.87 -2.6
5,429,610 - PFR28_04768 0.87 +0.8
5,429,622 + PFR28_04768 0.87 +0.6
5,429,622 + PFR28_04768 0.87 -0.8
5,429,623 - PFR28_04768 0.87 +0.9
5,429,623 - PFR28_04768 0.87 +0.2
5,429,685 - -0.2
5,429,693 + -0.6
5,429,693 + +2.2
5,429,693 + -0.2
5,429,693 + -0.7
5,429,693 + +0.2
5,429,693 + -0.9
5,429,694 - -0.5
5,429,694 - -1.4
5,429,694 - +0.6
5,429,694 - +0.4
5,429,694 - -1.9
5,429,694 - +1.9
5,429,694 - -1.1
5,429,903 + -3.7
5,429,925 - +1.1
5,430,218 + PFR28_04769 0.32 +1.1
5,430,219 - PFR28_04769 0.32 -0.4
5,430,219 - PFR28_04769 0.32 -3.0
5,430,219 - PFR28_04769 0.32 +0.2
5,430,219 - PFR28_04769 0.32 -0.5
5,430,219 - PFR28_04769 0.32 -0.4
5,430,222 - PFR28_04769 0.33 -0.2
5,430,283 + PFR28_04769 0.45 -2.0
5,430,284 - PFR28_04769 0.45 +2.2
5,430,284 - PFR28_04769 0.45 +0.4
5,430,284 - PFR28_04769 0.45 -0.1
5,430,284 - PFR28_04769 0.45 +4.9
5,430,340 + PFR28_04769 0.55 +0.8
5,430,340 + PFR28_04769 0.55 -0.1
5,430,341 - PFR28_04769 0.56 +1.5
5,430,380 + PFR28_04769 0.63 -0.2
5,430,381 - PFR28_04769 0.63 +0.8
5,430,533 + +0.1
5,430,533 + -0.8
5,430,533 + -0.9
5,430,533 + +0.8
5,430,533 + -0.1
5,430,534 - +0.8
5,430,534 - +0.4
5,430,534 - +0.3
5,430,534 - +0.7
5,430,534 - +1.0
5,430,534 - +1.8
5,430,534 - +0.5
5,430,542 + -0.0
5,430,543 - +1.5
5,430,543 - +2.2
5,430,636 + -2.3
5,430,684 + -0.3
5,430,684 + +0.8
5,430,685 - -2.4
5,430,685 - +0.5
5,430,685 - +0.3
5,430,707 + -1.0
5,430,707 + -2.1
5,430,729 + +1.1
5,430,730 - -2.6
5,430,730 - +1.5
5,430,737 - PFR28_04770 0.11 -1.6
5,430,737 - PFR28_04770 0.11 -1.1
5,430,818 + PFR28_04770 0.23 -1.3
5,430,818 + PFR28_04770 0.23 -0.2
5,430,819 - PFR28_04770 0.23 -0.3
5,430,819 - PFR28_04770 0.23 +0.2
5,431,032 - PFR28_04770 0.54 -2.0
5,431,221 + PFR28_04770 0.81 +0.6
5,431,222 - PFR28_04770 0.82 -1.1

Or see this region's nucleotide sequence