Strain Fitness in Pseudomonas sp. RS175 around PFR28_04457

Experiment: methyl-trans-p-coumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methyl-trans-p-coumarate (C)
5,074,778	+		PFR28_04455	0.63	+0.9
5,074,778	+		PFR28_04455	0.63	-0.2
5,074,779	-		PFR28_04455	0.63	+1.9
5,074,779	-		PFR28_04455	0.63	+1.1
5,074,909	+		PFR28_04455	0.76	-1.8
5,074,909	+		PFR28_04455	0.76	+1.2
5,074,909	+		PFR28_04455	0.76	+0.9
5,074,910	-		PFR28_04455	0.76	-0.1
5,074,910	-		PFR28_04455	0.76	+0.9
5,074,939	-		PFR28_04455	0.79	-0.0
5,075,008	+		PFR28_04455	0.85	-1.5
5,075,008	+		PFR28_04455	0.85	-0.1
5,075,008	+		PFR28_04455	0.85	+0.8
5,075,009	-		PFR28_04455	0.85	-1.2
5,075,009	-		PFR28_04455	0.85	-0.1
5,075,011	+		PFR28_04455	0.86	+0.2
5,075,011	+		PFR28_04455	0.86	+0.4
5,075,011	+		PFR28_04455	0.86	-0.2
5,075,011	+		PFR28_04455	0.86	-0.1
5,075,011	+		PFR28_04455	0.86	+0.8
5,075,011	+		PFR28_04455	0.86	+1.4
5,075,011	+		PFR28_04455	0.86	-0.5
5,075,011	+		PFR28_04455	0.86	-3.4
5,075,011	+		PFR28_04455	0.86	+1.6
5,075,011	+		PFR28_04455	0.86	-0.7
5,075,011	+		PFR28_04455	0.86	+0.1
5,075,011	+		PFR28_04455	0.86	-1.1
5,075,012	-		PFR28_04455	0.86	+0.8
5,075,012	-		PFR28_04455	0.86	+0.4
5,075,012	-		PFR28_04455	0.86	+0.8
5,075,012	-		PFR28_04455	0.86	+0.7
5,075,012	-		PFR28_04455	0.86	+1.4
5,075,012	-		PFR28_04455	0.86	+0.9
5,075,012	-		PFR28_04455	0.86	-0.2
5,075,012	-		PFR28_04455	0.86	+2.1
5,075,012	-		PFR28_04455	0.86	+1.2
5,075,012	-		PFR28_04455	0.86	-0.1
5,075,012	-		PFR28_04455	0.86	+1.3
5,075,012	-		PFR28_04455	0.86	+0.5
5,075,100	+				-0.3
5,075,158	+				+0.5
5,075,158	+				-2.5
5,075,306	-		PFR28_04456	0.13	+2.4
5,075,641	+		PFR28_04456	0.79	+1.0
5,075,641	+		PFR28_04456	0.79	+0.9
5,075,641	+		PFR28_04456	0.79	+0.9
5,075,641	+		PFR28_04456	0.79	-0.6
5,075,642	-		PFR28_04456	0.79	+0.1
5,075,642	-		PFR28_04456	0.79	-0.7
5,075,642	-		PFR28_04456	0.79	-3.7
5,075,642	-		PFR28_04456	0.79	-2.0
5,075,642	-		PFR28_04456	0.79	+1.1
5,075,642	-		PFR28_04456	0.79	+0.8
5,075,642	-		PFR28_04456	0.79	+1.0
5,075,642	-		PFR28_04456	0.79	-0.7
5,075,762	+				-1.3
5,075,762	+				-0.5
5,075,762	+				-1.7
5,075,762	+				-0.5
5,075,762	+				-0.4
5,075,762	+				+1.7
5,075,762	+				+0.7
5,075,763	-				+1.6
5,075,763	-				+1.7
5,075,763	-				-0.1
5,075,763	-				+0.7
5,076,057	+		PFR28_04457	0.20	+0.9
5,076,057	+		PFR28_04457	0.20	+0.2
5,076,058	-		PFR28_04457	0.21	+0.2
5,076,058	-		PFR28_04457	0.21	+1.1
5,076,058	-		PFR28_04457	0.21	+0.3
5,076,058	-		PFR28_04457	0.21	+0.3
5,076,192	+		PFR28_04457	0.29	+1.5
5,076,192	+		PFR28_04457	0.29	+0.8
5,076,192	+		PFR28_04457	0.29	-0.1
5,076,192	+		PFR28_04457	0.29	-1.6
5,076,192	+		PFR28_04457	0.29	-0.7
5,076,192	+		PFR28_04457	0.29	-1.5
5,076,192	+		PFR28_04457	0.29	+0.3
5,076,192	+		PFR28_04457	0.29	+0.5
5,076,192	+		PFR28_04457	0.29	+1.1
5,076,192	+		PFR28_04457	0.29	-2.7
5,076,192	+		PFR28_04457	0.29	+1.3
5,076,192	+		PFR28_04457	0.29	+0.2
5,076,193	-		PFR28_04457	0.30	+0.5
5,076,193	-		PFR28_04457	0.30	+0.9
5,076,193	-		PFR28_04457	0.30	+1.1
5,076,193	-		PFR28_04457	0.30	+0.4
5,076,193	-		PFR28_04457	0.30	+0.9
5,076,193	-		PFR28_04457	0.30	+0.2
5,076,193	-		PFR28_04457	0.30	+0.1
5,076,193	-		PFR28_04457	0.30	+0.0
5,076,204	+		PFR28_04457	0.30	+1.6
5,076,249	+		PFR28_04457	0.33	+0.4
5,076,252	+		PFR28_04457	0.33	+1.0
5,076,252	+		PFR28_04457	0.33	+0.5
5,076,253	-		PFR28_04457	0.34	+0.3
5,076,253	-		PFR28_04457	0.34	-0.0
5,076,253	-		PFR28_04457	0.34	+1.0
5,076,253	-		PFR28_04457	0.34	+0.6
5,076,253	-		PFR28_04457	0.34	+1.7
5,076,423	+		PFR28_04457	0.45	+0.5
5,076,465	+		PFR28_04457	0.48	-0.5
5,076,465	+		PFR28_04457	0.48	-0.2
5,076,465	+		PFR28_04457	0.48	+0.2
5,076,466	-		PFR28_04457	0.48	-1.6
5,076,466	-		PFR28_04457	0.48	+0.7
5,076,579	+		PFR28_04457	0.55	-1.1
5,076,579	+		PFR28_04457	0.55	+0.8
5,076,579	+		PFR28_04457	0.55	-0.5
5,076,579	+		PFR28_04457	0.55	+0.2
5,076,579	+		PFR28_04457	0.55	-0.2
5,076,580	-		PFR28_04457	0.55	-0.5
5,076,580	-		PFR28_04457	0.55	-1.0
5,076,580	-		PFR28_04457	0.55	-0.2
5,076,601	-		PFR28_04457	0.57	-0.7
5,076,876	+		PFR28_04457	0.75	+0.2
5,076,877	-		PFR28_04457	0.75	+1.2
5,076,877	-		PFR28_04457	0.75	+0.5
5,076,927	+		PFR28_04457	0.79	+3.3
5,076,928	-		PFR28_04457	0.79	-1.3
5,076,928	-		PFR28_04457	0.79	+0.4
5,076,928	-		PFR28_04457	0.79	-1.5
5,076,957	+		PFR28_04457	0.81	-1.7
5,076,958	-		PFR28_04457	0.81	+1.9
5,077,044	+		PFR28_04457	0.86	+0.2
5,077,044	+		PFR28_04457	0.86	+0.7
5,077,044	+		PFR28_04457	0.86	+0.3
5,077,044	+		PFR28_04457	0.86	+0.1
5,077,045	-		PFR28_04457	0.86	+0.6
5,077,045	-		PFR28_04457	0.86	+0.7
5,077,146	+				+1.3
5,077,149	+				-1.3
5,077,149	+				+1.1
5,077,149	+				+1.8
5,077,149	+				+0.8
5,077,149	+				-2.2
5,077,149	+				+0.5
5,077,149	+				+0.3
5,077,149	+				-0.6
5,077,149	+				-0.5
5,077,149	+				-0.3
5,077,150	-				+0.6
5,077,150	-				+0.8
5,077,150	-				+0.9
5,077,150	-				-0.1
5,077,150	-				+0.2
5,077,150	-				-0.1
5,077,150	-				-0.2
5,077,150	-				+0.7
5,077,150	-				+0.7
5,077,150	-				+0.6
5,077,150	-				+0.9
5,077,150	-				+1.8
5,077,150	-				+2.1
5,077,150	-				-0.5
5,077,150	-				-1.4
5,077,150	-				+1.2
5,077,164	+				+0.0
5,077,164	+				-0.5
5,077,164	+				-0.8
5,077,164	+				+0.8
5,077,165	-				+1.0
5,077,179	+				+0.7
5,077,180	-				-0.5
5,077,392	-				+0.4
5,077,425	+				+1.2
5,077,426	-				+2.1
5,077,426	-				-0.1
5,077,702	+		PFR28_04458	0.59	-0.9
5,077,702	+		PFR28_04458	0.59	+0.2
5,077,702	+		PFR28_04458	0.59	+1.1
5,077,702	+		PFR28_04458	0.59	-0.2
5,077,702	+		PFR28_04458	0.59	+1.4
5,077,702	+		PFR28_04458	0.59	+1.4
5,077,702	+		PFR28_04458	0.59	+0.5
5,077,703	-		PFR28_04458	0.59	+0.4
5,077,703	-		PFR28_04458	0.59	+0.3
5,077,703	-		PFR28_04458	0.59	+0.8
5,077,703	-		PFR28_04458	0.59	+1.1
5,077,703	-		PFR28_04458	0.59	-2.0
5,077,819	+		PFR28_04458	0.83	-0.1
5,077,820	-		PFR28_04458	0.83	+0.3
5,077,820	-		PFR28_04458	0.83	+1.7
5,077,820	-		PFR28_04458	0.83	+1.3
5,077,901	-				-0.4
5,077,901	-				+1.1
5,077,901	-				+1.0
5,077,901	-				+1.0
5,077,964	+				+1.9
5,077,964	+				+1.3
5,077,965	-				+0.3
5,077,974	+				-0.5
5,078,091	+		PFR28_04459	0.24	+3.4
5,078,137	+		PFR28_04459	0.34	+1.2
5,078,137	+		PFR28_04459	0.34	-0.4
5,078,137	+		PFR28_04459	0.34	+1.2
5,078,137	+		PFR28_04459	0.34	+0.1
5,078,137	+		PFR28_04459	0.34	+0.5
5,078,137	+		PFR28_04459	0.34	+2.1
5,078,138	-		PFR28_04459	0.34	-0.2
5,078,138	-		PFR28_04459	0.34	+1.2
5,078,138	-		PFR28_04459	0.34	+0.3
5,078,138	-		PFR28_04459	0.34	+0.2
5,078,138	-		PFR28_04459	0.34	+1.9
5,078,138	-		PFR28_04459	0.34	+0.8
5,078,139	+		PFR28_04459	0.34	-0.5
5,078,139	+		PFR28_04459	0.34	+0.0
5,078,139	+		PFR28_04459	0.34	-1.6
5,078,236	+		PFR28_04459	0.56	+1.4
5,078,236	+		PFR28_04459	0.56	-0.1
5,078,237	-		PFR28_04459	0.56	+1.4
5,078,237	-		PFR28_04459	0.56	-0.9
5,078,237	-		PFR28_04459	0.56	+0.3
5,078,237	-		PFR28_04459	0.56	-1.1
5,078,237	-		PFR28_04459	0.56	+1.1
5,078,245	-		PFR28_04459	0.58	+0.7
5,078,245	-		PFR28_04459	0.58	+1.1
5,078,245	-		PFR28_04459	0.58	-0.6