Strain Fitness in Pseudomonas sp. RS175 around PFR28_00349

Experiment: methyl-trans-p-coumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00348 and PFR28_00349 are separated by 205 nucleotidesPFR28_00349 and PFR28_00350 are separated by 176 nucleotides PFR28_00348: PFR28_00348 - Gamma-aminobutyraldehyde dehydrogenase, at 380,380 to 381,837 _00348 PFR28_00349: PFR28_00349 - HTH-type transcriptional regulator GltC, at 382,043 to 382,957 _00349 PFR28_00350: PFR28_00350 - hypothetical protein, at 383,134 to 383,847 _00350 Position (kb) 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 381.052 kb on + strand, within PFR28_00348at 381.053 kb on - strand, within PFR28_00348at 381.053 kb on - strand, within PFR28_00348at 381.090 kb on + strand, within PFR28_00348at 381.091 kb on - strand, within PFR28_00348at 381.091 kb on - strand, within PFR28_00348at 381.257 kb on - strand, within PFR28_00348at 381.429 kb on - strand, within PFR28_00348at 381.429 kb on - strand, within PFR28_00348at 381.429 kb on - strand, within PFR28_00348at 381.429 kb on - strand, within PFR28_00348at 381.440 kb on + strand, within PFR28_00348at 381.441 kb on - strand, within PFR28_00348at 381.441 kb on - strand, within PFR28_00348at 381.905 kb on + strandat 381.905 kb on + strandat 381.905 kb on + strandat 381.905 kb on + strandat 381.905 kb on + strandat 381.905 kb on + strandat 381.909 kb on + strandat 381.910 kb on - strandat 381.991 kb on + strandat 381.991 kb on + strandat 381.991 kb on + strandat 381.991 kb on + strandat 381.992 kb on - strandat 381.992 kb on - strandat 381.992 kb on - strandat 382.048 kb on + strandat 382.049 kb on - strandat 382.049 kb on - strandat 382.218 kb on + strand, within PFR28_00349at 382.219 kb on - strand, within PFR28_00349at 382.562 kb on - strand, within PFR28_00349at 382.563 kb on + strand, within PFR28_00349at 382.563 kb on + strand, within PFR28_00349at 382.564 kb on - strand, within PFR28_00349at 382.605 kb on + strand, within PFR28_00349at 382.641 kb on + strand, within PFR28_00349at 382.641 kb on + strand, within PFR28_00349at 382.641 kb on + strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.642 kb on - strand, within PFR28_00349at 382.645 kb on - strand, within PFR28_00349at 382.983 kb on - strandat 383.000 kb on + strandat 383.000 kb on + strandat 383.000 kb on + strandat 383.000 kb on + strandat 383.000 kb on + strandat 383.000 kb on + strandat 383.000 kb on + strandat 383.000 kb on + strandat 383.001 kb on - strandat 383.001 kb on - strandat 383.084 kb on - strandat 383.084 kb on - strandat 383.097 kb on + strandat 383.097 kb on + strandat 383.162 kb on + strandat 383.162 kb on + strandat 383.162 kb on + strandat 383.163 kb on - strandat 383.163 kb on - strandat 383.371 kb on + strand, within PFR28_00350at 383.371 kb on + strand, within PFR28_00350at 383.372 kb on - strand, within PFR28_00350at 383.372 kb on - strand, within PFR28_00350at 383.372 kb on - strand, within PFR28_00350at 383.404 kb on + strand, within PFR28_00350at 383.404 kb on + strand, within PFR28_00350at 383.405 kb on - strand, within PFR28_00350at 383.405 kb on - strand, within PFR28_00350at 383.405 kb on - strand, within PFR28_00350at 383.413 kb on + strand, within PFR28_00350at 383.413 kb on + strand, within PFR28_00350at 383.414 kb on - strand, within PFR28_00350at 383.414 kb on - strand, within PFR28_00350at 383.414 kb on - strand, within PFR28_00350at 383.414 kb on - strand, within PFR28_00350at 383.414 kb on - strand, within PFR28_00350at 383.503 kb on - strand, within PFR28_00350at 383.710 kb on + strand, within PFR28_00350at 383.710 kb on + strand, within PFR28_00350at 383.710 kb on + strand, within PFR28_00350at 383.710 kb on + strand, within PFR28_00350at 383.710 kb on + strand, within PFR28_00350at 383.710 kb on + strand, within PFR28_00350at 383.710 kb on + strand, within PFR28_00350at 383.710 kb on + strand, within PFR28_00350at 383.710 kb on + strand, within PFR28_00350at 383.711 kb on - strand, within PFR28_00350at 383.711 kb on - strand, within PFR28_00350at 383.711 kb on - strand, within PFR28_00350at 383.711 kb on - strand, within PFR28_00350at 383.711 kb on - strand, within PFR28_00350at 383.711 kb on - strand, within PFR28_00350at 383.711 kb on - strand, within PFR28_00350at 383.761 kb on + strand, within PFR28_00350at 383.762 kb on - strand, within PFR28_00350at 383.845 kb on + strandat 383.845 kb on + strandat 383.846 kb on - strandat 383.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl-trans-p-coumarate (C)
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381,052 + PFR28_00348 0.46 -0.5
381,053 - PFR28_00348 0.46 +1.3
381,053 - PFR28_00348 0.46 -2.4
381,090 + PFR28_00348 0.49 +1.4
381,091 - PFR28_00348 0.49 -1.3
381,091 - PFR28_00348 0.49 -2.2
381,257 - PFR28_00348 0.60 -1.9
381,429 - PFR28_00348 0.72 +0.3
381,429 - PFR28_00348 0.72 -1.5
381,429 - PFR28_00348 0.72 +0.1
381,429 - PFR28_00348 0.72 +1.6
381,440 + PFR28_00348 0.73 -1.2
381,441 - PFR28_00348 0.73 -0.8
381,441 - PFR28_00348 0.73 +0.7
381,905 + -1.6
381,905 + +1.6
381,905 + +0.7
381,905 + -1.3
381,905 + +0.4
381,905 + -1.9
381,909 + +1.5
381,910 - -1.6
381,991 + +2.0
381,991 + -1.1
381,991 + +1.0
381,991 + +0.6
381,992 - +2.0
381,992 - -0.6
381,992 - -0.7
382,048 + +0.1
382,049 - -0.2
382,049 - +0.1
382,218 + PFR28_00349 0.19 +0.3
382,219 - PFR28_00349 0.19 +0.8
382,562 - PFR28_00349 0.57 -1.2
382,563 + PFR28_00349 0.57 -1.5
382,563 + PFR28_00349 0.57 -0.0
382,564 - PFR28_00349 0.57 -3.7
382,605 + PFR28_00349 0.61 +0.9
382,641 + PFR28_00349 0.65 -0.1
382,641 + PFR28_00349 0.65 +0.3
382,641 + PFR28_00349 0.65 +0.8
382,642 - PFR28_00349 0.65 -0.9
382,642 - PFR28_00349 0.65 +1.4
382,642 - PFR28_00349 0.65 -1.8
382,642 - PFR28_00349 0.65 +1.0
382,642 - PFR28_00349 0.65 +0.1
382,642 - PFR28_00349 0.65 -0.5
382,645 - PFR28_00349 0.66 -0.5
382,983 - -2.3
383,000 + +1.3
383,000 + +1.3
383,000 + -1.6
383,000 + -1.4
383,000 + -0.7
383,000 + -0.3
383,000 + +0.9
383,000 + -0.0
383,001 - -1.7
383,001 - -0.7
383,084 - -0.8
383,084 - -0.3
383,097 + -0.8
383,097 + -1.6
383,162 + -0.2
383,162 + +2.8
383,162 + -0.6
383,163 - -0.1
383,163 - -0.8
383,371 + PFR28_00350 0.33 -0.7
383,371 + PFR28_00350 0.33 -2.4
383,372 - PFR28_00350 0.33 -1.0
383,372 - PFR28_00350 0.33 +0.3
383,372 - PFR28_00350 0.33 -0.8
383,404 + PFR28_00350 0.38 +0.8
383,404 + PFR28_00350 0.38 -0.7
383,405 - PFR28_00350 0.38 -0.7
383,405 - PFR28_00350 0.38 +1.6
383,405 - PFR28_00350 0.38 -0.3
383,413 + PFR28_00350 0.39 -3.0
383,413 + PFR28_00350 0.39 -1.0
383,414 - PFR28_00350 0.39 -0.9
383,414 - PFR28_00350 0.39 -1.1
383,414 - PFR28_00350 0.39 +2.1
383,414 - PFR28_00350 0.39 -0.3
383,414 - PFR28_00350 0.39 +0.3
383,503 - PFR28_00350 0.52 +0.8
383,710 + PFR28_00350 0.81 +0.4
383,710 + PFR28_00350 0.81 -2.1
383,710 + PFR28_00350 0.81 -0.1
383,710 + PFR28_00350 0.81 -0.5
383,710 + PFR28_00350 0.81 -1.7
383,710 + PFR28_00350 0.81 +0.7
383,710 + PFR28_00350 0.81 -0.3
383,710 + PFR28_00350 0.81 -0.2
383,710 + PFR28_00350 0.81 -1.7
383,711 - PFR28_00350 0.81 +1.1
383,711 - PFR28_00350 0.81 +0.1
383,711 - PFR28_00350 0.81 +0.6
383,711 - PFR28_00350 0.81 +2.2
383,711 - PFR28_00350 0.81 -2.2
383,711 - PFR28_00350 0.81 -0.5
383,711 - PFR28_00350 0.81 -1.2
383,761 + PFR28_00350 0.88 -0.4
383,762 - PFR28_00350 0.88 +0.6
383,845 + +0.9
383,845 + +0.8
383,846 - +0.4
383,846 - +0.3

Or see this region's nucleotide sequence