Strain Fitness in Pseudomonas sp. RS175 around PFR28_00345

Experiment: methyl-trans-p-coumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00343 and PFR28_00344 are separated by 159 nucleotidesPFR28_00344 and PFR28_00345 overlap by 11 nucleotidesPFR28_00345 and PFR28_00346 are separated by 1 nucleotides PFR28_00343: PFR28_00343 - Gamma-aminobutyraldehyde dehydrogenase, at 374,626 to 376,050 _00343 PFR28_00344: PFR28_00344 - Inner membrane ABC transporter permease protein YdcV, at 376,210 to 377,028 _00344 PFR28_00345: PFR28_00345 - Inner membrane ABC transporter permease protein YdcU, at 377,018 to 377,965 _00345 PFR28_00346: PFR28_00346 - Spermidine/putrescine import ATP-binding protein PotA, at 377,967 to 379,004 _00346 Position (kb) 377 378Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 376.161 kb on + strandat 376.161 kb on + strandat 376.161 kb on + strandat 376.161 kb on + strandat 376.162 kb on - strandat 376.211 kb on + strandat 376.211 kb on + strandat 376.212 kb on - strandat 376.212 kb on - strandat 376.212 kb on - strandat 376.256 kb on + strandat 376.256 kb on + strandat 376.256 kb on + strandat 376.256 kb on + strandat 376.256 kb on + strandat 376.257 kb on - strandat 376.257 kb on - strandat 376.257 kb on - strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.260 kb on - strandat 376.481 kb on + strand, within PFR28_00344at 376.481 kb on + strand, within PFR28_00344at 376.572 kb on + strand, within PFR28_00344at 376.572 kb on + strand, within PFR28_00344at 376.572 kb on + strand, within PFR28_00344at 376.573 kb on - strand, within PFR28_00344at 376.573 kb on - strand, within PFR28_00344at 376.573 kb on - strand, within PFR28_00344at 376.573 kb on - strand, within PFR28_00344at 376.573 kb on - strand, within PFR28_00344at 376.573 kb on - strand, within PFR28_00344at 376.573 kb on - strand, within PFR28_00344at 376.574 kb on + strand, within PFR28_00344at 376.574 kb on + strand, within PFR28_00344at 376.574 kb on + strand, within PFR28_00344at 376.574 kb on + strand, within PFR28_00344at 376.574 kb on + strand, within PFR28_00344at 376.574 kb on + strand, within PFR28_00344at 376.574 kb on + strand, within PFR28_00344at 376.575 kb on - strand, within PFR28_00344at 376.748 kb on + strand, within PFR28_00344at 376.749 kb on - strand, within PFR28_00344at 376.749 kb on - strand, within PFR28_00344at 376.777 kb on + strand, within PFR28_00344at 376.777 kb on + strand, within PFR28_00344at 376.928 kb on + strand, within PFR28_00344at 376.928 kb on + strand, within PFR28_00344at 376.929 kb on - strand, within PFR28_00344at 377.054 kb on - strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.061 kb on + strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.062 kb on - strandat 377.139 kb on + strand, within PFR28_00345at 377.140 kb on - strand, within PFR28_00345at 377.140 kb on - strand, within PFR28_00345at 377.140 kb on - strand, within PFR28_00345at 377.383 kb on - strand, within PFR28_00345at 377.383 kb on - strand, within PFR28_00345at 377.425 kb on + strand, within PFR28_00345at 377.426 kb on - strand, within PFR28_00345at 377.426 kb on - strand, within PFR28_00345at 377.426 kb on - strand, within PFR28_00345at 377.538 kb on + strand, within PFR28_00345at 377.538 kb on + strand, within PFR28_00345at 377.538 kb on + strand, within PFR28_00345at 377.539 kb on - strand, within PFR28_00345at 377.539 kb on - strand, within PFR28_00345at 377.539 kb on - strand, within PFR28_00345at 377.539 kb on - strand, within PFR28_00345at 377.551 kb on + strand, within PFR28_00345at 377.551 kb on + strand, within PFR28_00345at 377.552 kb on - strand, within PFR28_00345at 377.553 kb on + strand, within PFR28_00345at 377.553 kb on + strand, within PFR28_00345at 377.553 kb on + strand, within PFR28_00345at 377.554 kb on - strand, within PFR28_00345at 377.554 kb on - strand, within PFR28_00345at 377.586 kb on + strand, within PFR28_00345at 377.587 kb on - strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.628 kb on + strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.629 kb on - strand, within PFR28_00345at 377.631 kb on + strand, within PFR28_00345at 377.632 kb on - strand, within PFR28_00345at 377.632 kb on - strand, within PFR28_00345at 377.632 kb on - strand, within PFR28_00345at 377.632 kb on - strand, within PFR28_00345at 377.632 kb on - strand, within PFR28_00345at 377.791 kb on - strand, within PFR28_00345at 377.830 kb on - strand, within PFR28_00345at 377.877 kb on + strandat 377.878 kb on - strandat 377.878 kb on - strandat 377.878 kb on - strandat 377.878 kb on - strandat 378.127 kb on + strand, within PFR28_00346at 378.149 kb on - strand, within PFR28_00346at 378.337 kb on + strand, within PFR28_00346at 378.338 kb on - strand, within PFR28_00346at 378.338 kb on - strand, within PFR28_00346at 378.338 kb on - strand, within PFR28_00346at 378.710 kb on - strand, within PFR28_00346at 378.710 kb on - strand, within PFR28_00346at 378.734 kb on + strand, within PFR28_00346at 378.734 kb on + strand, within PFR28_00346at 378.734 kb on + strand, within PFR28_00346at 378.734 kb on + strand, within PFR28_00346at 378.752 kb on - strand, within PFR28_00346

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl-trans-p-coumarate (C)
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376,161 + +1.4
376,161 + +2.0
376,161 + -0.6
376,161 + -0.3
376,162 - -0.8
376,211 + +1.8
376,211 + -0.0
376,212 - +0.8
376,212 - -1.4
376,212 - +0.3
376,256 + -2.7
376,256 + +0.1
376,256 + +0.4
376,256 + +1.2
376,256 + -0.5
376,257 - +1.8
376,257 - -0.3
376,257 - +0.6
376,259 + -1.3
376,259 + -0.5
376,259 + +1.6
376,259 + -0.5
376,259 + -1.7
376,260 - +0.4
376,481 + PFR28_00344 0.33 -0.7
376,481 + PFR28_00344 0.33 -3.2
376,572 + PFR28_00344 0.44 -1.5
376,572 + PFR28_00344 0.44 -2.2
376,572 + PFR28_00344 0.44 -1.5
376,573 - PFR28_00344 0.44 +2.4
376,573 - PFR28_00344 0.44 +0.8
376,573 - PFR28_00344 0.44 -1.3
376,573 - PFR28_00344 0.44 +2.4
376,573 - PFR28_00344 0.44 -0.6
376,573 - PFR28_00344 0.44 -1.0
376,573 - PFR28_00344 0.44 +1.2
376,574 + PFR28_00344 0.44 +2.0
376,574 + PFR28_00344 0.44 -1.4
376,574 + PFR28_00344 0.44 -1.5
376,574 + PFR28_00344 0.44 +0.1
376,574 + PFR28_00344 0.44 -0.3
376,574 + PFR28_00344 0.44 -0.3
376,574 + PFR28_00344 0.44 +0.5
376,575 - PFR28_00344 0.45 +2.1
376,748 + PFR28_00344 0.66 +0.5
376,749 - PFR28_00344 0.66 +0.6
376,749 - PFR28_00344 0.66 +1.3
376,777 + PFR28_00344 0.69 -0.5
376,777 + PFR28_00344 0.69 -1.7
376,928 + PFR28_00344 0.88 -0.6
376,928 + PFR28_00344 0.88 -0.2
376,929 - PFR28_00344 0.88 +0.1
377,054 - -0.2
377,061 + -0.7
377,061 + +1.8
377,061 + -0.5
377,061 + -1.1
377,061 + +0.2
377,061 + -0.2
377,061 + +0.4
377,061 + +2.8
377,061 + +1.5
377,061 + -0.7
377,061 + +1.9
377,061 + -2.8
377,061 + -1.0
377,061 + -1.5
377,061 + -1.6
377,062 - +0.5
377,062 - +0.8
377,062 - +1.7
377,062 - +0.6
377,062 - +1.2
377,062 - -0.0
377,062 - +0.3
377,062 - +0.4
377,139 + PFR28_00345 0.13 +0.8
377,140 - PFR28_00345 0.13 -0.7
377,140 - PFR28_00345 0.13 +0.2
377,140 - PFR28_00345 0.13 +1.0
377,383 - PFR28_00345 0.39 +2.2
377,383 - PFR28_00345 0.39 -0.3
377,425 + PFR28_00345 0.43 +0.5
377,426 - PFR28_00345 0.43 -2.0
377,426 - PFR28_00345 0.43 -0.4
377,426 - PFR28_00345 0.43 +0.6
377,538 + PFR28_00345 0.55 +0.8
377,538 + PFR28_00345 0.55 +0.2
377,538 + PFR28_00345 0.55 +0.1
377,539 - PFR28_00345 0.55 +0.3
377,539 - PFR28_00345 0.55 -2.0
377,539 - PFR28_00345 0.55 -0.1
377,539 - PFR28_00345 0.55 -0.4
377,551 + PFR28_00345 0.56 -1.3
377,551 + PFR28_00345 0.56 -0.9
377,552 - PFR28_00345 0.56 +0.3
377,553 + PFR28_00345 0.56 +0.6
377,553 + PFR28_00345 0.56 +1.7
377,553 + PFR28_00345 0.56 +0.2
377,554 - PFR28_00345 0.57 -0.7
377,554 - PFR28_00345 0.57 +0.8
377,586 + PFR28_00345 0.60 +0.1
377,587 - PFR28_00345 0.60 -0.4
377,628 + PFR28_00345 0.64 -1.6
377,628 + PFR28_00345 0.64 -1.3
377,628 + PFR28_00345 0.64 -3.7
377,628 + PFR28_00345 0.64 +0.2
377,628 + PFR28_00345 0.64 -0.4
377,628 + PFR28_00345 0.64 +0.0
377,628 + PFR28_00345 0.64 -2.8
377,628 + PFR28_00345 0.64 -0.9
377,628 + PFR28_00345 0.64 +0.9
377,628 + PFR28_00345 0.64 +1.8
377,628 + PFR28_00345 0.64 +1.6
377,628 + PFR28_00345 0.64 +0.2
377,628 + PFR28_00345 0.64 +0.5
377,628 + PFR28_00345 0.64 -0.5
377,628 + PFR28_00345 0.64 +2.2
377,628 + PFR28_00345 0.64 +0.1
377,629 - PFR28_00345 0.64 -0.1
377,629 - PFR28_00345 0.64 +2.7
377,629 - PFR28_00345 0.64 +1.3
377,629 - PFR28_00345 0.64 +1.2
377,629 - PFR28_00345 0.64 +1.0
377,629 - PFR28_00345 0.64 -0.2
377,629 - PFR28_00345 0.64 -0.2
377,629 - PFR28_00345 0.64 -0.1
377,629 - PFR28_00345 0.64 +0.1
377,631 + PFR28_00345 0.65 +0.8
377,632 - PFR28_00345 0.65 +0.2
377,632 - PFR28_00345 0.65 +1.2
377,632 - PFR28_00345 0.65 +0.1
377,632 - PFR28_00345 0.65 +3.2
377,632 - PFR28_00345 0.65 -0.7
377,791 - PFR28_00345 0.82 +0.3
377,830 - PFR28_00345 0.86 -0.7
377,877 + +0.1
377,878 - +0.1
377,878 - -0.3
377,878 - -0.3
377,878 - +0.4
378,127 + PFR28_00346 0.15 +0.5
378,149 - PFR28_00346 0.18 -1.8
378,337 + PFR28_00346 0.36 -1.0
378,338 - PFR28_00346 0.36 -0.2
378,338 - PFR28_00346 0.36 -0.3
378,338 - PFR28_00346 0.36 -0.6
378,710 - PFR28_00346 0.72 +1.8
378,710 - PFR28_00346 0.72 -2.1
378,734 + PFR28_00346 0.74 +0.5
378,734 + PFR28_00346 0.74 -0.7
378,734 + PFR28_00346 0.74 +1.2
378,734 + PFR28_00346 0.74 -0.0
378,752 - PFR28_00346 0.76 +1.3

Or see this region's nucleotide sequence