Experiment: 4-Acetoxy-3-methoxycinnamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00591 and PFR28_00592 are separated by 75 nucleotides PFR28_00592 and PFR28_00593 are separated by 167 nucleotides PFR28_00593 and PFR28_00594 are separated by 216 nucleotides PFR28_00594 and PFR28_00595 are separated by 92 nucleotides
PFR28_00591: PFR28_00591 - hypothetical protein, at 631,930 to 632,040
_00591
PFR28_00592: PFR28_00592 - hypothetical protein, at 632,116 to 632,667
_00592
PFR28_00593: PFR28_00593 - HTH-type transcriptional regulator GntR, at 632,835 to 633,866
_00593
PFR28_00594: PFR28_00594 - Gluconokinase, at 634,083 to 634,616
_00594
PFR28_00595: PFR28_00595 - High-affinity gluconate transporter, at 634,709 to 636,061
_00595
Position (kb) 632
633
634 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 631.860 kb on + strand at 631.861 kb on - strand at 631.862 kb on + strand at 631.862 kb on + strand at 631.863 kb on - strand at 631.863 kb on - strand at 631.863 kb on - strand at 631.884 kb on + strand at 631.884 kb on + strand at 631.885 kb on - strand at 631.885 kb on - strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.890 kb on + strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.891 kb on - strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.892 kb on + strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.893 kb on - strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.922 kb on + strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.923 kb on - strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.926 kb on + strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 631.927 kb on - strand at 632.137 kb on - strand at 632.137 kb on - strand at 632.304 kb on + strand, within PFR28_00592 at 632.304 kb on + strand, within PFR28_00592 at 632.304 kb on + strand, within PFR28_00592 at 632.304 kb on + strand, within PFR28_00592 at 632.304 kb on + strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.305 kb on - strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.342 kb on + strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.343 kb on - strand, within PFR28_00592 at 632.419 kb on + strand, within PFR28_00592 at 632.420 kb on - strand, within PFR28_00592 at 632.420 kb on - strand, within PFR28_00592 at 632.420 kb on - strand, within PFR28_00592 at 632.420 kb on - strand, within PFR28_00592 at 632.500 kb on - strand, within PFR28_00592 at 632.637 kb on + strand at 632.637 kb on + strand at 632.637 kb on + strand at 632.638 kb on - strand at 632.680 kb on + strand at 632.680 kb on + strand at 632.680 kb on + strand at 632.680 kb on + strand at 632.680 kb on + strand at 632.680 kb on + strand at 632.681 kb on - strand at 632.681 kb on - strand at 632.681 kb on - strand at 632.681 kb on - strand at 632.681 kb on - strand at 632.681 kb on - strand at 632.684 kb on + strand at 632.684 kb on + strand at 632.684 kb on + strand at 632.684 kb on + strand at 632.684 kb on + strand at 632.685 kb on - strand at 632.756 kb on + strand at 632.756 kb on + strand at 632.756 kb on + strand at 632.757 kb on - strand at 632.757 kb on - strand at 632.757 kb on - strand at 633.205 kb on + strand, within PFR28_00593 at 633.284 kb on - strand, within PFR28_00593 at 633.397 kb on + strand, within PFR28_00593 at 633.397 kb on + strand, within PFR28_00593 at 633.397 kb on + strand, within PFR28_00593 at 633.397 kb on + strand, within PFR28_00593 at 633.397 kb on + strand, within PFR28_00593 at 633.397 kb on + strand, within PFR28_00593 at 633.397 kb on + strand, within PFR28_00593 at 633.397 kb on + strand, within PFR28_00593 at 633.397 kb on + strand, within PFR28_00593 at 633.398 kb on - strand, within PFR28_00593 at 633.398 kb on - strand, within PFR28_00593 at 633.398 kb on - strand, within PFR28_00593 at 633.398 kb on - strand, within PFR28_00593 at 633.398 kb on - strand, within PFR28_00593 at 633.398 kb on - strand, within PFR28_00593 at 633.484 kb on + strand, within PFR28_00593 at 633.485 kb on - strand, within PFR28_00593 at 633.493 kb on + strand, within PFR28_00593 at 633.493 kb on + strand, within PFR28_00593 at 633.493 kb on + strand, within PFR28_00593 at 633.493 kb on + strand, within PFR28_00593 at 633.493 kb on + strand, within PFR28_00593 at 633.493 kb on + strand, within PFR28_00593 at 633.493 kb on + strand, within PFR28_00593 at 633.493 kb on + strand, within PFR28_00593 at 633.493 kb on + strand, within PFR28_00593 at 633.494 kb on - strand, within PFR28_00593 at 633.494 kb on - strand, within PFR28_00593 at 633.494 kb on - strand, within PFR28_00593 at 633.494 kb on - strand, within PFR28_00593 at 633.494 kb on - strand, within PFR28_00593 at 633.494 kb on - strand, within PFR28_00593 at 633.494 kb on - strand, within PFR28_00593 at 633.494 kb on - strand, within PFR28_00593 at 633.494 kb on - strand, within PFR28_00593 at 633.494 kb on - strand, within PFR28_00593 at 633.494 kb on - strand, within PFR28_00593 at 633.529 kb on + strand, within PFR28_00593 at 633.535 kb on + strand, within PFR28_00593 at 633.535 kb on + strand, within PFR28_00593 at 633.535 kb on + strand, within PFR28_00593 at 633.535 kb on + strand, within PFR28_00593 at 633.535 kb on + strand, within PFR28_00593 at 633.535 kb on + strand, within PFR28_00593 at 633.535 kb on + strand, within PFR28_00593 at 633.535 kb on + strand, within PFR28_00593 at 633.535 kb on + strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.536 kb on - strand, within PFR28_00593 at 633.633 kb on + strand, within PFR28_00593 at 633.633 kb on + strand, within PFR28_00593 at 633.633 kb on + strand, within PFR28_00593 at 633.634 kb on - strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.691 kb on + strand, within PFR28_00593 at 633.692 kb on - strand, within PFR28_00593 at 633.692 kb on - strand, within PFR28_00593 at 633.692 kb on - strand, within PFR28_00593 at 633.692 kb on - strand, within PFR28_00593 at 633.692 kb on - strand, within PFR28_00593 at 633.692 kb on - strand, within PFR28_00593 at 633.692 kb on - strand, within PFR28_00593 at 633.692 kb on - strand, within PFR28_00593 at 633.692 kb on - strand, within PFR28_00593 at 633.692 kb on - strand, within PFR28_00593 at 633.692 kb on - strand, within PFR28_00593 at 633.818 kb on + strand at 633.839 kb on + strand at 633.839 kb on + strand at 633.839 kb on + strand at 633.839 kb on + strand at 633.839 kb on + strand at 633.839 kb on + strand at 633.839 kb on + strand at 633.840 kb on - strand at 633.840 kb on - strand at 633.840 kb on - strand at 633.840 kb on - strand at 633.845 kb on + strand at 633.899 kb on + strand at 633.900 kb on - strand at 633.905 kb on - strand at 633.905 kb on - strand at 633.992 kb on - strand at 634.042 kb on + strand at 634.042 kb on + strand at 634.042 kb on + strand at 634.042 kb on + strand at 634.042 kb on + strand at 634.042 kb on + strand at 634.042 kb on + strand at 634.042 kb on + strand at 634.042 kb on + strand at 634.043 kb on - strand at 634.043 kb on - strand at 634.043 kb on - strand at 634.080 kb on + strand at 634.080 kb on + strand at 634.080 kb on + strand at 634.080 kb on + strand at 634.080 kb on + strand at 634.080 kb on + strand at 634.080 kb on + strand at 634.080 kb on + strand at 634.080 kb on + strand at 634.081 kb on - strand at 634.081 kb on - strand at 634.396 kb on + strand, within PFR28_00594 at 634.396 kb on + strand, within PFR28_00594 at 634.397 kb on - strand, within PFR28_00594 at 634.397 kb on - strand, within PFR28_00594 at 634.397 kb on - strand, within PFR28_00594 at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.575 kb on + strand at 634.576 kb on - strand at 634.576 kb on - strand at 634.576 kb on - strand at 634.576 kb on - strand at 634.576 kb on - strand at 634.576 kb on - strand at 634.576 kb on - strand at 634.576 kb on - strand at 634.576 kb on - strand at 634.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Acetoxy-3-methoxycinnamic (C) remove 631,860 + -0.4 631,861 - -1.1 631,862 + +0.1 631,862 + -1.6 631,863 - +1.1 631,863 - -2.0 631,863 - +0.2 631,884 + -0.8 631,884 + -0.0 631,885 - -0.4 631,885 - -1.0 631,890 + -0.3 631,890 + -1.3 631,890 + +1.2 631,890 + +0.4 631,890 + -0.6 631,890 + +1.4 631,890 + +1.0 631,890 + -0.7 631,890 + +0.9 631,890 + -0.0 631,890 + +0.4 631,890 + +0.2 631,890 + +0.6 631,890 + -2.5 631,890 + -0.6 631,890 + +2.2 631,890 + -0.2 631,890 + -2.9 631,890 + +0.0 631,890 + -0.2 631,890 + +0.2 631,890 + +0.9 631,890 + +0.1 631,890 + -1.2 631,890 + +1.6 631,890 + +0.3 631,890 + -0.6 631,890 + +0.7 631,890 + +0.0 631,890 + +0.9 631,891 - -0.2 631,891 - -1.6 631,891 - +0.5 631,891 - -0.8 631,891 - -0.0 631,891 - -2.4 631,891 - +1.6 631,891 - +0.0 631,891 - +0.7 631,891 - +0.7 631,891 - -0.3 631,891 - +1.1 631,891 - +0.1 631,891 - +0.0 631,891 - -1.6 631,891 - +0.2 631,891 - +0.8 631,891 - -1.7 631,891 - +1.6 631,891 - -0.8 631,892 + +0.8 631,892 + -1.0 631,892 + -0.3 631,892 + +0.2 631,892 + +0.7 631,892 + -0.6 631,892 + +0.7 631,893 - -0.0 631,893 - +2.4 631,893 - +0.3 631,893 - -0.5 631,893 - +0.5 631,893 - +1.2 631,893 - -0.2 631,893 - +0.5 631,922 + -0.9 631,922 + +0.5 631,922 + -0.1 631,922 + -0.1 631,922 + -0.7 631,922 + -0.2 631,922 + -1.3 631,922 + -0.3 631,922 + -2.7 631,923 - +0.7 631,923 - +1.0 631,923 - -0.9 631,923 - +0.5 631,923 - -0.6 631,923 - +0.2 631,926 + -0.7 631,926 + -0.0 631,926 + +0.2 631,926 + -0.7 631,926 + -3.0 631,926 + +0.7 631,926 + -1.2 631,926 + -2.3 631,926 + +0.3 631,926 + +2.4 631,926 + -0.1 631,926 + +0.8 631,926 + +0.3 631,926 + -0.9 631,926 + +0.2 631,926 + -0.2 631,927 - +0.1 631,927 - +0.0 631,927 - +0.6 631,927 - +0.9 631,927 - +0.3 631,927 - +1.3 631,927 - -0.0 631,927 - +0.1 631,927 - -0.2 631,927 - +0.4 631,927 - +0.4 631,927 - -0.4 632,137 - -1.2 632,137 - +1.4 632,304 + PFR28_00592 0.34 +0.5 632,304 + PFR28_00592 0.34 -1.2 632,304 + PFR28_00592 0.34 +1.6 632,304 + PFR28_00592 0.34 +1.0 632,304 + PFR28_00592 0.34 +1.8 632,305 - PFR28_00592 0.34 -2.4 632,305 - PFR28_00592 0.34 -0.5 632,305 - PFR28_00592 0.34 +0.7 632,305 - PFR28_00592 0.34 +0.5 632,305 - PFR28_00592 0.34 -2.4 632,305 - PFR28_00592 0.34 +0.1 632,342 + PFR28_00592 0.41 +0.7 632,342 + PFR28_00592 0.41 +0.7 632,342 + PFR28_00592 0.41 +0.0 632,342 + PFR28_00592 0.41 +0.2 632,342 + PFR28_00592 0.41 -0.2 632,342 + PFR28_00592 0.41 -2.2 632,342 + PFR28_00592 0.41 -0.5 632,342 + PFR28_00592 0.41 +1.0 632,342 + PFR28_00592 0.41 -1.4 632,342 + PFR28_00592 0.41 +0.2 632,342 + PFR28_00592 0.41 +0.2 632,343 - PFR28_00592 0.41 +1.0 632,343 - PFR28_00592 0.41 -0.3 632,343 - PFR28_00592 0.41 -0.5 632,343 - PFR28_00592 0.41 +0.0 632,343 - PFR28_00592 0.41 +0.0 632,343 - PFR28_00592 0.41 -0.2 632,343 - PFR28_00592 0.41 +0.5 632,419 + PFR28_00592 0.55 -1.5 632,420 - PFR28_00592 0.55 -3.0 632,420 - PFR28_00592 0.55 -1.3 632,420 - PFR28_00592 0.55 -1.4 632,420 - PFR28_00592 0.55 -2.3 632,500 - PFR28_00592 0.70 +1.0 632,637 + +0.8 632,637 + +0.5 632,637 + +0.8 632,638 - -0.7 632,680 + -0.1 632,680 + -0.8 632,680 + +1.3 632,680 + +1.0 632,680 + -0.0 632,680 + -0.4 632,681 - -3.5 632,681 - -0.4 632,681 - +0.9 632,681 - +0.9 632,681 - -2.3 632,681 - +0.7 632,684 + -0.7 632,684 + +0.5 632,684 + -0.2 632,684 + -0.0 632,684 + -1.1 632,685 - -0.5 632,756 + -0.5 632,756 + -1.1 632,756 + -0.6 632,757 - +0.1 632,757 - -0.5 632,757 - +3.2 633,205 + PFR28_00593 0.36 -2.3 633,284 - PFR28_00593 0.44 -0.9 633,397 + PFR28_00593 0.54 -0.0 633,397 + PFR28_00593 0.54 -0.5 633,397 + PFR28_00593 0.54 -2.5 633,397 + PFR28_00593 0.54 -0.3 633,397 + PFR28_00593 0.54 +0.1 633,397 + PFR28_00593 0.54 -0.2 633,397 + PFR28_00593 0.54 -0.3 633,397 + PFR28_00593 0.54 -2.7 633,397 + PFR28_00593 0.54 -1.4 633,398 - PFR28_00593 0.55 -2.3 633,398 - PFR28_00593 0.55 +0.1 633,398 - PFR28_00593 0.55 -2.4 633,398 - PFR28_00593 0.55 -3.2 633,398 - PFR28_00593 0.55 -1.7 633,398 - PFR28_00593 0.55 +1.7 633,484 + PFR28_00593 0.63 -1.2 633,485 - PFR28_00593 0.63 +1.8 633,493 + PFR28_00593 0.64 +1.3 633,493 + PFR28_00593 0.64 +0.5 633,493 + PFR28_00593 0.64 +0.7 633,493 + PFR28_00593 0.64 -0.2 633,493 + PFR28_00593 0.64 +0.4 633,493 + PFR28_00593 0.64 -2.6 633,493 + PFR28_00593 0.64 -0.7 633,493 + PFR28_00593 0.64 +0.4 633,493 + PFR28_00593 0.64 -1.4 633,494 - PFR28_00593 0.64 +0.4 633,494 - PFR28_00593 0.64 +0.1 633,494 - PFR28_00593 0.64 +0.3 633,494 - PFR28_00593 0.64 -3.7 633,494 - PFR28_00593 0.64 -1.1 633,494 - PFR28_00593 0.64 -0.8 633,494 - PFR28_00593 0.64 -2.1 633,494 - PFR28_00593 0.64 -1.7 633,494 - PFR28_00593 0.64 -1.5 633,494 - PFR28_00593 0.64 -3.7 633,494 - PFR28_00593 0.64 +0.4 633,529 + PFR28_00593 0.67 +0.0 633,535 + PFR28_00593 0.68 -1.0 633,535 + PFR28_00593 0.68 -0.8 633,535 + PFR28_00593 0.68 -1.6 633,535 + PFR28_00593 0.68 -1.2 633,535 + PFR28_00593 0.68 +0.1 633,535 + PFR28_00593 0.68 +0.4 633,535 + PFR28_00593 0.68 +0.2 633,535 + PFR28_00593 0.68 -1.6 633,535 + PFR28_00593 0.68 -2.9 633,536 - PFR28_00593 0.68 -4.7 633,536 - PFR28_00593 0.68 -1.7 633,536 - PFR28_00593 0.68 -0.7 633,536 - PFR28_00593 0.68 -0.6 633,536 - PFR28_00593 0.68 -3.5 633,536 - PFR28_00593 0.68 -2.7 633,536 - PFR28_00593 0.68 -1.2 633,536 - PFR28_00593 0.68 -1.4 633,536 - PFR28_00593 0.68 +0.1 633,536 - PFR28_00593 0.68 -0.5 633,536 - PFR28_00593 0.68 -2.8 633,536 - 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-0.5
Or see this region's nucleotide sequence