Strain Fitness in Pseudomonas sp. RS175 around PFR28_05083

Experiment: 4-Acetoxy-3-methoxycinnamic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_05081 and PFR28_05082 are separated by 16 nucleotidesPFR28_05082 and PFR28_05083 are separated by 87 nucleotidesPFR28_05083 and PFR28_05084 are separated by 103 nucleotides PFR28_05081: PFR28_05081 - hypothetical protein, at 5,820,211 to 5,820,915 _05081 PFR28_05082: PFR28_05082 - Adenylyl-sulfate kinase, at 5,820,932 to 5,821,519 _05082 PFR28_05083: PFR28_05083 - Bifunctional protein HldE, at 5,821,607 to 5,823,028 _05083 PFR28_05084: PFR28_05084 - hypothetical protein, at 5,823,132 to 5,824,097 _05084 Position (kb) 5821 5822 5823 5824Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5820.728 kb on - strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.738 kb on + strand, within PFR28_05081at 5820.739 kb on - strand, within PFR28_05081at 5820.739 kb on - strand, within PFR28_05081at 5820.739 kb on - strand, within PFR28_05081at 5820.739 kb on - strand, within PFR28_05081at 5820.739 kb on - strand, within PFR28_05081at 5820.739 kb on - strand, within PFR28_05081at 5820.739 kb on - strand, within PFR28_05081at 5820.739 kb on - strand, within PFR28_05081at 5820.819 kb on + strand, within PFR28_05081at 5820.819 kb on + strand, within PFR28_05081at 5820.820 kb on - strand, within PFR28_05081at 5820.820 kb on - strand, within PFR28_05081at 5820.881 kb on - strandat 5820.881 kb on - strandat 5820.881 kb on - strandat 5820.892 kb on + strandat 5820.892 kb on + strandat 5820.893 kb on - strandat 5820.893 kb on - strandat 5820.893 kb on - strandat 5820.927 kb on + strandat 5821.015 kb on + strand, within PFR28_05082at 5821.015 kb on + strand, within PFR28_05082at 5821.015 kb on + strand, within PFR28_05082at 5821.015 kb on + strand, within PFR28_05082at 5821.016 kb on - strand, within PFR28_05082at 5821.016 kb on - strand, within PFR28_05082at 5821.016 kb on - strand, within PFR28_05082at 5821.316 kb on + strand, within PFR28_05082at 5821.316 kb on + strand, within PFR28_05082at 5821.316 kb on + strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.317 kb on - strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.320 kb on + strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.321 kb on - strand, within PFR28_05082at 5821.367 kb on + strand, within PFR28_05082at 5821.368 kb on - strand, within PFR28_05082at 5821.368 kb on - strand, within PFR28_05082at 5821.456 kb on + strand, within PFR28_05082at 5821.456 kb on + strand, within PFR28_05082at 5821.456 kb on + strand, within PFR28_05082at 5821.457 kb on - strand, within PFR28_05082at 5821.457 kb on - strand, within PFR28_05082at 5821.457 kb on - strand, within PFR28_05082at 5821.517 kb on + strandat 5821.518 kb on - strandat 5821.518 kb on - strandat 5821.567 kb on + strandat 5821.567 kb on + strandat 5821.567 kb on + strandat 5821.567 kb on + strandat 5821.567 kb on + strandat 5821.592 kb on + strandat 5823.022 kb on + strandat 5823.081 kb on + strandat 5823.082 kb on - strandat 5823.087 kb on + strandat 5823.087 kb on + strandat 5823.088 kb on - strandat 5823.088 kb on - strandat 5823.088 kb on - strandat 5823.133 kb on + strandat 5823.133 kb on + strandat 5823.313 kb on + strand, within PFR28_05084at 5823.313 kb on + strand, within PFR28_05084at 5823.313 kb on + strand, within PFR28_05084at 5823.314 kb on - strand, within PFR28_05084at 5823.314 kb on - strand, within PFR28_05084at 5823.314 kb on - strand, within PFR28_05084at 5823.314 kb on - strand, within PFR28_05084at 5823.314 kb on - strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.362 kb on - strand, within PFR28_05084at 5823.362 kb on - strand, within PFR28_05084at 5823.362 kb on - strand, within PFR28_05084at 5823.362 kb on - strand, within PFR28_05084at 5823.362 kb on - strand, within PFR28_05084at 5823.404 kb on - strand, within PFR28_05084at 5823.520 kb on + strand, within PFR28_05084at 5823.521 kb on - strand, within PFR28_05084at 5823.521 kb on - strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.671 kb on - strand, within PFR28_05084at 5823.689 kb on + strand, within PFR28_05084at 5823.690 kb on - strand, within PFR28_05084at 5823.866 kb on - strand, within PFR28_05084at 5824.012 kb on + strandat 5824.012 kb on + strandat 5824.012 kb on + strandat 5824.013 kb on - strandat 5824.013 kb on - strandat 5824.013 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Acetoxy-3-methoxycinnamic (C)
remove
5,820,728 - PFR28_05081 0.73 -0.6
5,820,738 + PFR28_05081 0.75 +0.8
5,820,738 + PFR28_05081 0.75 +0.2
5,820,738 + PFR28_05081 0.75 +1.2
5,820,738 + PFR28_05081 0.75 -0.2
5,820,738 + PFR28_05081 0.75 +0.5
5,820,738 + PFR28_05081 0.75 -1.9
5,820,738 + PFR28_05081 0.75 -0.1
5,820,738 + PFR28_05081 0.75 -0.5
5,820,738 + PFR28_05081 0.75 -0.2
5,820,738 + PFR28_05081 0.75 +0.1
5,820,738 + PFR28_05081 0.75 +2.0
5,820,738 + PFR28_05081 0.75 -0.6
5,820,739 - PFR28_05081 0.75 +0.6
5,820,739 - PFR28_05081 0.75 +0.8
5,820,739 - PFR28_05081 0.75 +0.6
5,820,739 - PFR28_05081 0.75 -0.7
5,820,739 - PFR28_05081 0.75 +0.1
5,820,739 - PFR28_05081 0.75 -0.5
5,820,739 - PFR28_05081 0.75 +0.6
5,820,739 - PFR28_05081 0.75 -1.1
5,820,819 + PFR28_05081 0.86 -0.0
5,820,819 + PFR28_05081 0.86 +0.0
5,820,820 - PFR28_05081 0.86 -0.5
5,820,820 - PFR28_05081 0.86 -1.0
5,820,881 - +0.4
5,820,881 - +0.4
5,820,881 - +0.9
5,820,892 + +0.1
5,820,892 + -0.8
5,820,893 - +0.5
5,820,893 - -0.2
5,820,893 - -0.0
5,820,927 + -0.6
5,821,015 + PFR28_05082 0.14 -0.1
5,821,015 + PFR28_05082 0.14 -1.4
5,821,015 + PFR28_05082 0.14 +0.0
5,821,015 + PFR28_05082 0.14 -2.1
5,821,016 - PFR28_05082 0.14 -0.5
5,821,016 - PFR28_05082 0.14 -1.2
5,821,016 - PFR28_05082 0.14 -0.0
5,821,316 + PFR28_05082 0.65 -0.7
5,821,316 + PFR28_05082 0.65 -0.2
5,821,316 + PFR28_05082 0.65 -0.3
5,821,317 - PFR28_05082 0.65 -0.2
5,821,317 - PFR28_05082 0.65 -0.9
5,821,317 - PFR28_05082 0.65 +0.7
5,821,317 - PFR28_05082 0.65 +0.3
5,821,317 - PFR28_05082 0.65 +0.7
5,821,317 - PFR28_05082 0.65 -0.3
5,821,317 - PFR28_05082 0.65 +0.1
5,821,317 - PFR28_05082 0.65 +0.1
5,821,317 - PFR28_05082 0.65 +1.4
5,821,317 - PFR28_05082 0.65 -1.1
5,821,317 - PFR28_05082 0.65 -0.6
5,821,317 - PFR28_05082 0.65 -0.5
5,821,317 - PFR28_05082 0.65 -1.3
5,821,317 - PFR28_05082 0.65 -1.1
5,821,317 - PFR28_05082 0.65 +0.4
5,821,320 + PFR28_05082 0.66 -0.6
5,821,320 + PFR28_05082 0.66 +0.9
5,821,320 + PFR28_05082 0.66 -0.4
5,821,320 + PFR28_05082 0.66 +0.1
5,821,320 + PFR28_05082 0.66 +1.5
5,821,320 + PFR28_05082 0.66 -0.5
5,821,320 + PFR28_05082 0.66 -2.1
5,821,320 + PFR28_05082 0.66 -0.3
5,821,320 + PFR28_05082 0.66 +0.1
5,821,320 + PFR28_05082 0.66 -0.3
5,821,320 + PFR28_05082 0.66 -0.5
5,821,320 + PFR28_05082 0.66 -0.8
5,821,320 + PFR28_05082 0.66 +0.5
5,821,320 + PFR28_05082 0.66 +0.1
5,821,320 + PFR28_05082 0.66 -0.3
5,821,320 + PFR28_05082 0.66 -1.6
5,821,320 + PFR28_05082 0.66 +0.8
5,821,320 + PFR28_05082 0.66 +0.9
5,821,320 + PFR28_05082 0.66 -0.2
5,821,320 + PFR28_05082 0.66 +0.9
5,821,320 + PFR28_05082 0.66 -2.9
5,821,320 + PFR28_05082 0.66 -0.8
5,821,320 + PFR28_05082 0.66 -0.8
5,821,320 + PFR28_05082 0.66 -0.2
5,821,320 + PFR28_05082 0.66 +0.6
5,821,320 + PFR28_05082 0.66 +0.8
5,821,320 + PFR28_05082 0.66 -0.2
5,821,320 + PFR28_05082 0.66 +0.1
5,821,320 + PFR28_05082 0.66 +0.7
5,821,321 - PFR28_05082 0.66 +0.1
5,821,321 - PFR28_05082 0.66 -0.6
5,821,321 - PFR28_05082 0.66 +0.1
5,821,321 - PFR28_05082 0.66 -2.2
5,821,321 - PFR28_05082 0.66 +0.8
5,821,321 - PFR28_05082 0.66 -0.3
5,821,321 - PFR28_05082 0.66 +0.7
5,821,321 - PFR28_05082 0.66 -1.0
5,821,321 - PFR28_05082 0.66 +1.2
5,821,321 - PFR28_05082 0.66 -0.4
5,821,321 - PFR28_05082 0.66 +1.4
5,821,321 - PFR28_05082 0.66 +0.4
5,821,321 - PFR28_05082 0.66 -1.2
5,821,321 - PFR28_05082 0.66 +1.5
5,821,367 + PFR28_05082 0.74 -0.2
5,821,368 - PFR28_05082 0.74 +1.9
5,821,368 - PFR28_05082 0.74 -0.0
5,821,456 + PFR28_05082 0.89 +0.4
5,821,456 + PFR28_05082 0.89 -0.3
5,821,456 + PFR28_05082 0.89 -1.5
5,821,457 - PFR28_05082 0.89 +0.5
5,821,457 - PFR28_05082 0.89 -0.6
5,821,457 - PFR28_05082 0.89 -0.0
5,821,517 + +0.2
5,821,518 - -1.7
5,821,518 - +0.2
5,821,567 + +1.1
5,821,567 + +1.4
5,821,567 + +0.2
5,821,567 + +0.3
5,821,567 + +1.0
5,821,592 + -0.1
5,823,022 + +0.0
5,823,081 + +0.4
5,823,082 - -0.5
5,823,087 + -0.3
5,823,087 + -2.0
5,823,088 - -0.1
5,823,088 - +0.5
5,823,088 - -0.8
5,823,133 + +0.9
5,823,133 + -0.3
5,823,313 + PFR28_05084 0.19 -1.0
5,823,313 + PFR28_05084 0.19 -0.2
5,823,313 + PFR28_05084 0.19 -0.2
5,823,314 - PFR28_05084 0.19 -0.7
5,823,314 - PFR28_05084 0.19 +1.1
5,823,314 - PFR28_05084 0.19 +0.1
5,823,314 - PFR28_05084 0.19 -0.8
5,823,314 - PFR28_05084 0.19 -0.2
5,823,361 + PFR28_05084 0.24 -0.4
5,823,361 + PFR28_05084 0.24 -1.8
5,823,361 + PFR28_05084 0.24 -0.9
5,823,361 + PFR28_05084 0.24 -0.4
5,823,361 + PFR28_05084 0.24 +0.6
5,823,361 + PFR28_05084 0.24 -1.8
5,823,361 + PFR28_05084 0.24 +0.5
5,823,361 + PFR28_05084 0.24 -1.4
5,823,361 + PFR28_05084 0.24 -1.2
5,823,361 + PFR28_05084 0.24 -2.3
5,823,362 - PFR28_05084 0.24 -0.6
5,823,362 - PFR28_05084 0.24 +0.4
5,823,362 - PFR28_05084 0.24 -0.9
5,823,362 - PFR28_05084 0.24 -0.1
5,823,362 - PFR28_05084 0.24 +0.4
5,823,404 - PFR28_05084 0.28 -0.0
5,823,520 + PFR28_05084 0.40 -0.8
5,823,521 - PFR28_05084 0.40 -0.9
5,823,521 - PFR28_05084 0.40 +0.3
5,823,556 + PFR28_05084 0.44 -2.5
5,823,556 + PFR28_05084 0.44 +0.3
5,823,556 + PFR28_05084 0.44 -0.2
5,823,556 + PFR28_05084 0.44 -1.0
5,823,556 + PFR28_05084 0.44 -0.2
5,823,556 + PFR28_05084 0.44 -0.6
5,823,556 + PFR28_05084 0.44 -1.0
5,823,556 + PFR28_05084 0.44 -2.2
5,823,556 + PFR28_05084 0.44 +0.9
5,823,556 + PFR28_05084 0.44 -0.1
5,823,556 + PFR28_05084 0.44 +0.9
5,823,556 + PFR28_05084 0.44 -0.6
5,823,557 - PFR28_05084 0.44 -0.7
5,823,557 - PFR28_05084 0.44 -0.1
5,823,557 - PFR28_05084 0.44 -0.1
5,823,557 - PFR28_05084 0.44 -0.8
5,823,557 - PFR28_05084 0.44 -0.8
5,823,557 - PFR28_05084 0.44 +0.8
5,823,557 - PFR28_05084 0.44 +0.0
5,823,557 - PFR28_05084 0.44 +0.0
5,823,557 - PFR28_05084 0.44 -0.9
5,823,557 - PFR28_05084 0.44 +0.8
5,823,557 - PFR28_05084 0.44 -0.7
5,823,557 - PFR28_05084 0.44 -1.2
5,823,557 - PFR28_05084 0.44 +0.1
5,823,557 - PFR28_05084 0.44 -1.6
5,823,671 - PFR28_05084 0.56 -0.5
5,823,689 + PFR28_05084 0.58 +1.6
5,823,690 - PFR28_05084 0.58 -2.8
5,823,866 - PFR28_05084 0.76 -0.8
5,824,012 + -1.4
5,824,012 + -1.9
5,824,012 + -3.2
5,824,013 - -1.4
5,824,013 - -2.4
5,824,013 - -1.1

Or see this region's nucleotide sequence