Strain Fitness in Pseudomonas sp. RS175 around PFR28_02071

Experiment: caffeic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic (C)
2,345,931	+				-1.2
2,345,931	+				+0.2
2,345,965	+				-0.9
2,346,122	+				-3.0
2,346,199	+		PFR28_02070	0.16	-0.4
2,346,200	-		PFR28_02070	0.16	+1.3
2,346,200	-		PFR28_02070	0.16	-0.4
2,346,206	-		PFR28_02070	0.17	-1.2
2,346,265	+		PFR28_02070	0.26	-1.2
2,346,265	+		PFR28_02070	0.26	-0.7
2,346,265	+		PFR28_02070	0.26	-1.3
2,346,265	+		PFR28_02070	0.26	-1.3
2,346,265	+		PFR28_02070	0.26	+0.3
2,346,265	+		PFR28_02070	0.26	-0.2
2,346,265	+		PFR28_02070	0.26	+0.6
2,346,265	+		PFR28_02070	0.26	-1.3
2,346,266	-		PFR28_02070	0.27	-1.4
2,346,266	-		PFR28_02070	0.27	-1.5
2,346,266	-		PFR28_02070	0.27	-1.1
2,346,266	-		PFR28_02070	0.27	-1.3
2,346,316	+		PFR28_02070	0.35	+1.5
2,346,316	+		PFR28_02070	0.35	-0.8
2,346,316	+		PFR28_02070	0.35	+0.9
2,346,316	+		PFR28_02070	0.35	-4.1
2,346,316	+		PFR28_02070	0.35	-0.2
2,346,316	+		PFR28_02070	0.35	+1.3
2,346,316	+		PFR28_02070	0.35	-1.8
2,346,316	+		PFR28_02070	0.35	-0.6
2,346,316	+		PFR28_02070	0.35	-1.8
2,346,316	+		PFR28_02070	0.35	+3.1
2,346,317	-		PFR28_02070	0.35	-1.3
2,346,317	-		PFR28_02070	0.35	+0.6
2,346,317	-		PFR28_02070	0.35	+2.1
2,346,318	+		PFR28_02070	0.35	-1.7
2,346,318	+		PFR28_02070	0.35	-0.3
2,346,319	-		PFR28_02070	0.35	+0.9
2,346,319	-		PFR28_02070	0.35	+3.3
2,346,319	-		PFR28_02070	0.35	+1.1
2,346,403	+		PFR28_02070	0.49	+0.3
2,346,729	+				-3.4
2,346,856	+		PFR28_02071	0.10	-1.0
2,346,856	+		PFR28_02071	0.10	-1.7
2,346,856	+		PFR28_02071	0.10	-0.7
2,346,856	+		PFR28_02071	0.10	+0.7
2,346,856	+		PFR28_02071	0.10	+0.4
2,346,856	+		PFR28_02071	0.10	-0.4
2,346,856	+		PFR28_02071	0.10	+0.9
2,346,856	+		PFR28_02071	0.10	+0.3
2,346,856	+		PFR28_02071	0.10	-2.2
2,346,856	+		PFR28_02071	0.10	-0.5
2,346,856	+		PFR28_02071	0.10	+1.3
2,346,856	+		PFR28_02071	0.10	+0.9
2,346,856	+		PFR28_02071	0.10	-0.4
2,346,857	-		PFR28_02071	0.10	-0.4
2,346,857	-		PFR28_02071	0.10	-2.7
2,346,857	-		PFR28_02071	0.10	+1.3
2,346,857	-		PFR28_02071	0.10	+0.1
2,346,857	-		PFR28_02071	0.10	+1.2
2,346,857	-		PFR28_02071	0.10	-0.5
2,346,869	+		PFR28_02071	0.11	+0.3
2,346,869	+		PFR28_02071	0.11	-1.0
2,346,870	-		PFR28_02071	0.12	-0.3
2,346,936	+		PFR28_02071	0.19	+0.3
2,346,936	+		PFR28_02071	0.19	-0.2
2,346,936	+		PFR28_02071	0.19	+1.0
2,346,936	+		PFR28_02071	0.19	+1.3
2,346,936	+		PFR28_02071	0.19	-0.2
2,346,937	-		PFR28_02071	0.19	+1.5
2,346,937	-		PFR28_02071	0.19	+0.8
2,346,937	-		PFR28_02071	0.19	-0.1
2,346,948	+		PFR28_02071	0.20	-1.1
2,346,948	+		PFR28_02071	0.20	+2.5
2,346,948	+		PFR28_02071	0.20	+1.2
2,346,948	+		PFR28_02071	0.20	-0.8
2,346,948	+		PFR28_02071	0.20	+1.6
2,346,949	-		PFR28_02071	0.20	-0.4
2,346,949	-		PFR28_02071	0.20	-0.4
2,346,949	-		PFR28_02071	0.20	-1.1
2,346,949	-		PFR28_02071	0.20	-0.9
2,346,949	-		PFR28_02071	0.20	+0.3
2,346,949	-		PFR28_02071	0.20	+1.0
2,347,038	+		PFR28_02071	0.29	-1.1
2,347,132	+		PFR28_02071	0.40	-0.5
2,347,132	+		PFR28_02071	0.40	-0.7
2,347,132	+		PFR28_02071	0.40	-0.1
2,347,132	+		PFR28_02071	0.40	-2.4
2,347,133	-		PFR28_02071	0.40	-0.2
2,347,133	-		PFR28_02071	0.40	+0.9
2,347,133	-		PFR28_02071	0.40	-1.1
2,347,133	-		PFR28_02071	0.40	+2.8
2,347,133	-		PFR28_02071	0.40	+1.0
2,347,149	+		PFR28_02071	0.41	-0.0
2,347,150	-		PFR28_02071	0.41	-2.7
2,347,309	+		PFR28_02071	0.58	+1.1
2,347,309	+		PFR28_02071	0.58	+0.6
2,347,309	+		PFR28_02071	0.58	-0.2
2,347,309	+		PFR28_02071	0.58	-0.3
2,347,309	+		PFR28_02071	0.58	+0.3
2,347,309	+		PFR28_02071	0.58	-1.5
2,347,309	+		PFR28_02071	0.58	+0.5
2,347,309	+		PFR28_02071	0.58	+0.7
2,347,310	-		PFR28_02071	0.59	-0.2
2,347,310	-		PFR28_02071	0.59	-0.4
2,347,404	+		PFR28_02071	0.69	+0.5
2,347,404	+		PFR28_02071	0.69	-1.5
2,347,404	+		PFR28_02071	0.69	-0.6
2,347,404	+		PFR28_02071	0.69	+1.6
2,347,404	+		PFR28_02071	0.69	+1.1
2,347,453	-		PFR28_02071	0.74	+0.5
2,347,455	+		PFR28_02071	0.74	+0.6
2,347,455	+		PFR28_02071	0.74	+0.9
2,347,456	-		PFR28_02071	0.74	-0.8
2,347,574	+		PFR28_02071	0.87	+1.4
2,347,574	+		PFR28_02071	0.87	+0.1
2,347,575	-		PFR28_02071	0.87	+0.1
2,347,575	-		PFR28_02071	0.87	+0.1
2,347,633	-				+0.2
2,347,633	-				+0.6
2,347,705	-				+0.4
2,347,705	-				-0.2
2,347,736	-				+0.4
2,347,736	-				-1.0
2,347,825	+		PFR28_02072	0.11	+0.4
2,347,825	+		PFR28_02072	0.11	+2.1
2,347,826	-		PFR28_02072	0.11	-2.9
2,347,832	+		PFR28_02072	0.12	+1.2
2,347,849	-		PFR28_02072	0.14	-2.5
2,348,121	+		PFR28_02072	0.51	+1.2
2,348,121	+		PFR28_02072	0.51	+3.1
2,348,122	-		PFR28_02072	0.51	+1.0
2,348,122	-		PFR28_02072	0.51	-1.7
2,348,122	-		PFR28_02072	0.51	+0.3
2,348,152	+		PFR28_02072	0.55	-1.5
2,348,152	+		PFR28_02072	0.55	-0.8
2,348,152	+		PFR28_02072	0.55	-1.1
2,348,153	-		PFR28_02072	0.56	+2.3
2,348,153	-		PFR28_02072	0.56	+1.7
2,348,153	-		PFR28_02072	0.56	+0.9
2,348,176	+		PFR28_02072	0.59	-1.1
2,348,176	+		PFR28_02072	0.59	+1.0
2,348,177	-		PFR28_02072	0.59	-0.4
2,348,177	-		PFR28_02072	0.59	+0.9
2,348,177	-		PFR28_02072	0.59	+1.3
2,348,177	-		PFR28_02072	0.59	+2.5
2,348,177	-		PFR28_02072	0.59	-3.6
2,348,198	-		PFR28_02072	0.62	+0.1
2,348,201	-		PFR28_02072	0.62	-2.1
2,348,201	-		PFR28_02072	0.62	+0.6
2,348,240	+		PFR28_02072	0.67	+2.9
2,348,240	+		PFR28_02072	0.67	-1.3
2,348,240	+		PFR28_02072	0.67	+2.6
2,348,240	+		PFR28_02072	0.67	+1.9
2,348,241	-		PFR28_02072	0.67	-2.5
2,348,241	-		PFR28_02072	0.67	-1.3
2,348,277	+		PFR28_02072	0.72	-1.3
2,348,279	+		PFR28_02072	0.73	+0.7
2,348,281	+		PFR28_02072	0.73	-0.9
2,348,281	+		PFR28_02072	0.73	-1.3
2,348,281	+		PFR28_02072	0.73	-0.1
2,348,282	-		PFR28_02072	0.73	+0.5
2,348,282	-		PFR28_02072	0.73	-1.0
2,348,282	-		PFR28_02072	0.73	+0.7
2,348,282	-		PFR28_02072	0.73	+1.9
2,348,299	+		PFR28_02072	0.75	+0.2
2,348,311	-		PFR28_02072	0.77	-0.1
2,348,315	-		PFR28_02072	0.78	+0.4
2,348,315	-		PFR28_02072	0.78	-3.1
2,348,315	-		PFR28_02072	0.78	+0.2
2,348,554	-				-0.6
2,348,579	-				+1.8
2,348,585	-				-0.3
2,348,588	+				+0.2
2,348,589	-				-2.9
2,348,589	-				+1.0
2,348,592	+				-2.3
2,348,592	+				-1.4
2,348,592	+				-0.6
2,348,593	-				+0.9
2,348,593	-				+0.1
2,348,664	+				-0.6
2,348,664	+				-0.3
2,348,664	+				-1.1
2,348,665	-				+2.0
2,348,665	-				-0.8
2,348,665	-				+2.2
2,348,665	-				-0.9
2,348,665	-				-1.8
2,348,665	-				-1.3
2,348,670	+				+1.4
2,348,670	+				+0.9
2,348,670	+				-0.5
2,348,670	+				+1.5
2,348,671	-				+0.3
2,348,671	-				-1.7