Strain Fitness in Pseudomonas sp. RS175 around PFR28_01061

Experiment: caffeic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic (C)
1,165,900	-				+0.5
1,165,924	+				+2.2
1,165,924	+				+0.9
1,165,925	-				-0.7
1,165,949	+				+0.3
1,165,952	+				+0.6
1,165,953	-				-0.5
1,165,953	-				-1.0
1,165,953	-				+0.9
1,165,953	-				+2.4
1,166,041	+				-0.7
1,166,078	+		PFR28_01060	0.11	+0.6
1,166,078	+		PFR28_01060	0.11	-0.7
1,166,078	+		PFR28_01060	0.11	-2.1
1,166,078	+		PFR28_01060	0.11	-1.5
1,166,078	+		PFR28_01060	0.11	+0.0
1,166,078	+		PFR28_01060	0.11	-0.4
1,166,078	+		PFR28_01060	0.11	+1.6
1,166,078	+		PFR28_01060	0.11	+1.6
1,166,079	-		PFR28_01060	0.11	+0.0
1,166,079	-		PFR28_01060	0.11	-2.0
1,166,079	-		PFR28_01060	0.11	+0.8
1,166,079	-		PFR28_01060	0.11	+0.6
1,166,079	-		PFR28_01060	0.11	+0.6
1,166,079	-		PFR28_01060	0.11	-0.4
1,166,079	-		PFR28_01060	0.11	+0.0
1,166,086	+		PFR28_01060	0.12	+0.6
1,166,086	+		PFR28_01060	0.12	+1.6
1,166,086	+		PFR28_01060	0.12	+4.4
1,166,086	+		PFR28_01060	0.12	-0.4
1,166,086	+		PFR28_01060	0.12	-1.2
1,166,086	+		PFR28_01060	0.12	-1.4
1,166,087	-		PFR28_01060	0.12	+0.4
1,166,087	-		PFR28_01060	0.12	+0.2
1,166,087	-		PFR28_01060	0.12	-2.1
1,166,087	-		PFR28_01060	0.12	-1.0
1,166,087	-		PFR28_01060	0.12	+0.0
1,166,087	-		PFR28_01060	0.12	+1.6
1,166,087	-		PFR28_01060	0.12	-1.0
1,166,087	-		PFR28_01060	0.12	+1.6
1,166,087	-		PFR28_01060	0.12	+0.6
1,166,087	-		PFR28_01060	0.12	-1.0
1,166,534	+		PFR28_01060	0.70	+0.6
1,166,564	+		PFR28_01060	0.74	+1.9
1,166,565	-		PFR28_01060	0.74	+0.0
1,166,776	+				+0.4
1,166,837	+				-0.5
1,166,837	+				+0.8
1,166,838	-				+0.1
1,166,838	-				+0.3
1,166,838	-				+0.5
1,166,894	-				-0.1
1,166,923	+				+0.2
1,166,923	+				+0.1
1,166,923	+				+1.2
1,166,923	+				-2.0
1,166,923	+				-0.4
1,166,923	+				+1.7
1,166,924	-				+0.9
1,166,924	-				-0.3
1,166,924	-				-0.0
1,166,924	-				-1.4
1,166,964	+				+1.6
1,166,964	+				-3.9
1,166,964	+				+0.3
1,166,964	+				-0.8
1,166,964	+				-0.0
1,167,031	+		PFR28_01061	0.11	-1.0
1,167,032	-		PFR28_01061	0.11	+0.8
1,167,032	-		PFR28_01061	0.11	+0.5
1,167,127	+		PFR28_01061	0.18	-0.3
1,167,127	+		PFR28_01061	0.18	-0.5
1,167,128	-		PFR28_01061	0.18	+0.8
1,167,128	-		PFR28_01061	0.18	+1.4
1,167,128	-		PFR28_01061	0.18	+1.3
1,167,128	-		PFR28_01061	0.18	+0.2
1,167,178	+		PFR28_01061	0.22	+0.1
1,167,178	+		PFR28_01061	0.22	-0.3
1,167,178	+		PFR28_01061	0.22	+0.1
1,167,179	-		PFR28_01061	0.22	-0.1
1,167,179	-		PFR28_01061	0.22	-0.1
1,167,254	+		PFR28_01061	0.28	+1.0
1,167,254	+		PFR28_01061	0.28	+0.5
1,167,254	+		PFR28_01061	0.28	-1.7
1,167,254	+		PFR28_01061	0.28	+0.7
1,167,254	+		PFR28_01061	0.28	-0.2
1,167,254	+		PFR28_01061	0.28	-0.4
1,167,254	+		PFR28_01061	0.28	-1.8
1,167,254	+		PFR28_01061	0.28	+0.6
1,167,254	+		PFR28_01061	0.28	+2.6
1,167,255	-		PFR28_01061	0.28	+0.0
1,167,255	-		PFR28_01061	0.28	+0.1
1,167,255	-		PFR28_01061	0.28	-1.5
1,167,255	-		PFR28_01061	0.28	+1.0
1,167,255	-		PFR28_01061	0.28	-1.7
1,167,255	-		PFR28_01061	0.28	+0.6
1,167,255	-		PFR28_01061	0.28	+0.6
1,167,325	-		PFR28_01061	0.33	+0.6
1,167,415	+		PFR28_01061	0.40	-0.3
1,167,424	+		PFR28_01061	0.41	-0.1
1,167,424	+		PFR28_01061	0.41	+1.0
1,167,425	-		PFR28_01061	0.41	+0.1
1,167,425	-		PFR28_01061	0.41	-1.7
1,167,436	+		PFR28_01061	0.42	-1.0
1,167,511	+		PFR28_01061	0.47	+0.2
1,167,511	+		PFR28_01061	0.47	-1.4
1,167,511	+		PFR28_01061	0.47	+2.5
1,167,511	+		PFR28_01061	0.47	+0.6
1,167,511	+		PFR28_01061	0.47	-1.8
1,167,511	+		PFR28_01061	0.47	+1.0
1,167,511	+		PFR28_01061	0.47	+1.6
1,167,512	-		PFR28_01061	0.48	+2.6
1,167,512	-		PFR28_01061	0.48	-1.2
1,167,512	-		PFR28_01061	0.48	-0.5
1,167,512	-		PFR28_01061	0.48	+0.4
1,167,512	-		PFR28_01061	0.48	-0.0
1,167,598	+		PFR28_01061	0.54	+0.4
1,167,652	+		PFR28_01061	0.58	+1.9
1,167,652	+		PFR28_01061	0.58	+0.4
1,167,652	+		PFR28_01061	0.58	-0.0
1,167,652	+		PFR28_01061	0.58	+0.7
1,167,679	+		PFR28_01061	0.60	+1.3
1,167,679	+		PFR28_01061	0.60	+0.2
1,167,680	-		PFR28_01061	0.60	+0.9
1,167,895	+		PFR28_01061	0.77	-0.4
1,167,895	+		PFR28_01061	0.77	-1.5
1,167,895	+		PFR28_01061	0.77	+1.6
1,167,896	-		PFR28_01061	0.77	+0.3
1,167,896	-		PFR28_01061	0.77	+0.8
1,168,108	+				-2.6
1,168,108	+				+1.4
1,168,109	-				+1.4
1,168,114	+				-0.2
1,168,115	-				+0.6
1,168,175	-				-2.1
1,168,291	+				+1.3
1,168,291	+				-2.2
1,168,291	+				-0.5
1,168,291	+				+1.3
1,168,291	+				-1.0
1,168,291	+				-0.5
1,168,291	+				+1.6
1,168,291	+				+0.9
1,168,291	+				+0.2
1,168,291	+				-0.5
1,168,292	-				-0.8
1,168,292	-				+1.5
1,168,292	-				-0.9
1,168,292	-				+0.1
1,168,292	-				+1.3
1,168,292	-				+0.2
1,168,292	-				+1.0
1,168,292	-				+2.4
1,168,546	+		PFR28_01062	0.40	-0.8
1,168,546	+		PFR28_01062	0.40	-0.4
1,168,546	+		PFR28_01062	0.40	-1.4
1,168,546	+		PFR28_01062	0.40	-1.0
1,168,546	+		PFR28_01062	0.40	-1.5
1,168,546	+		PFR28_01062	0.40	-0.7
1,168,546	+		PFR28_01062	0.40	+1.4
1,168,546	+		PFR28_01062	0.40	+0.6
1,168,547	-		PFR28_01062	0.40	-1.7
1,168,547	-		PFR28_01062	0.40	-0.5
1,168,547	-		PFR28_01062	0.40	+0.8
1,168,547	-		PFR28_01062	0.40	-2.5
1,168,547	-		PFR28_01062	0.40	-1.2
1,168,879	+		PFR28_01062	0.80	+0.3
1,168,879	+		PFR28_01062	0.80	-0.8
1,168,879	+		PFR28_01062	0.80	-0.4
1,168,879	+		PFR28_01062	0.80	-0.7
1,168,879	+		PFR28_01062	0.80	-0.6
1,168,879	+		PFR28_01062	0.80	+1.8
1,168,879	+		PFR28_01062	0.80	+1.6
1,168,879	+		PFR28_01062	0.80	+0.5
1,168,880	-		PFR28_01062	0.80	-0.9
1,168,880	-		PFR28_01062	0.80	+0.3
1,168,880	-		PFR28_01062	0.80	+0.9
1,169,041	+				-0.1
1,169,041	+				+0.6
1,169,041	+				-1.6
1,169,041	+				-0.0
1,169,041	+				+0.4
1,169,041	+				-1.0
1,169,041	+				+0.9
1,169,041	+				-0.4
1,169,041	+				+1.6
1,169,042	-				-1.2
1,169,042	-				-1.0
1,169,042	-				+1.4
1,169,042	-				-0.2
1,169,042	-				-1.2
1,169,042	-				-0.4
1,169,042	-				-2.8
1,169,042	-				+0.2
1,169,042	-				-2.0
1,169,042	-				-3.0
1,169,042	-				+0.8
1,169,042	-				-2.8
1,169,042	-				-0.0
1,169,042	-				+1.4
1,169,045	+				+1.3
1,169,045	+				-2.5
1,169,045	+				-1.9
1,169,045	+				+1.2
1,169,045	+				+0.3
1,169,045	+				-2.3
1,169,045	+				-0.4
1,169,045	+				-1.8
1,169,046	-				+1.2
1,169,046	-				-1.5
1,169,046	-				-2.0
1,169,046	-				+0.5
1,169,046	-				-0.1
1,169,046	-				-0.4
1,169,046	-				-0.2
1,169,046	-				-2.8
1,169,046	-				+0.2
1,169,046	-				-0.9
1,169,046	-				+0.9
1,169,046	-				-1.2
1,169,046	-				-0.6
1,169,046	-				+0.9
1,169,046	-				-0.2
1,169,046	-				+0.2
1,169,046	-				-0.5
1,169,168	+				-2.2
1,169,169	-				+2.9
1,169,169	-				+1.8
1,169,169	-				+0.0
1,169,169	-				-3.2