Strain Fitness in Pseudomonas sp. RS175 around PFR28_05026

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_05024 and PFR28_05025 overlap by 4 nucleotidesPFR28_05025 and PFR28_05026 overlap by 1 nucleotidesPFR28_05026 and PFR28_05027 are separated by 10 nucleotides PFR28_05024: PFR28_05024 - hypothetical protein, at 5,737,271 to 5,738,467 _05024 PFR28_05025: PFR28_05025 - hypothetical protein, at 5,738,464 to 5,738,967 _05025 PFR28_05026: PFR28_05026 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 5,738,967 to 5,739,695 _05026 PFR28_05027: PFR28_05027 - hypothetical protein, at 5,739,706 to 5,740,953 _05027 Position (kb) 5738 5739 5740Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5738.017 kb on - strand, within PFR28_05024at 5738.086 kb on - strand, within PFR28_05024at 5738.121 kb on + strand, within PFR28_05024at 5738.457 kb on + strandat 5738.490 kb on + strandat 5738.490 kb on + strandat 5738.491 kb on - strandat 5738.547 kb on - strand, within PFR28_05025at 5738.615 kb on + strand, within PFR28_05025at 5738.615 kb on + strand, within PFR28_05025at 5738.615 kb on + strand, within PFR28_05025at 5738.615 kb on + strand, within PFR28_05025at 5738.616 kb on - strand, within PFR28_05025at 5738.616 kb on - strand, within PFR28_05025at 5739.103 kb on + strand, within PFR28_05026at 5739.104 kb on - strand, within PFR28_05026at 5739.104 kb on - strand, within PFR28_05026at 5739.109 kb on + strand, within PFR28_05026at 5739.109 kb on + strand, within PFR28_05026at 5739.110 kb on - strand, within PFR28_05026at 5739.232 kb on + strand, within PFR28_05026at 5739.232 kb on + strand, within PFR28_05026at 5739.232 kb on + strand, within PFR28_05026at 5739.232 kb on + strand, within PFR28_05026at 5739.232 kb on + strand, within PFR28_05026at 5739.232 kb on + strand, within PFR28_05026at 5739.232 kb on + strand, within PFR28_05026at 5739.233 kb on - strand, within PFR28_05026at 5739.233 kb on - strand, within PFR28_05026at 5739.233 kb on - strand, within PFR28_05026at 5739.233 kb on - strand, within PFR28_05026at 5739.233 kb on - strand, within PFR28_05026at 5739.233 kb on - strand, within PFR28_05026at 5739.233 kb on - strand, within PFR28_05026at 5739.233 kb on - strand, within PFR28_05026at 5739.233 kb on - strand, within PFR28_05026at 5739.263 kb on - strand, within PFR28_05026at 5739.286 kb on + strand, within PFR28_05026at 5739.287 kb on - strand, within PFR28_05026at 5739.673 kb on + strandat 5739.673 kb on + strandat 5739.674 kb on - strandat 5739.674 kb on - strandat 5739.674 kb on - strandat 5739.674 kb on - strandat 5739.674 kb on - strandat 5739.688 kb on + strandat 5739.688 kb on + strandat 5739.688 kb on + strandat 5739.688 kb on + strandat 5739.688 kb on + strandat 5739.689 kb on - strandat 5739.689 kb on - strandat 5739.848 kb on + strand, within PFR28_05027at 5739.848 kb on + strand, within PFR28_05027at 5739.848 kb on + strand, within PFR28_05027at 5739.848 kb on + strand, within PFR28_05027at 5739.849 kb on - strand, within PFR28_05027at 5739.849 kb on - strand, within PFR28_05027at 5739.849 kb on - strand, within PFR28_05027at 5739.893 kb on + strand, within PFR28_05027at 5739.893 kb on + strand, within PFR28_05027at 5739.894 kb on - strand, within PFR28_05027at 5739.894 kb on - strand, within PFR28_05027at 5739.894 kb on - strand, within PFR28_05027at 5739.906 kb on + strand, within PFR28_05027at 5740.493 kb on + strand, within PFR28_05027at 5740.582 kb on + strand, within PFR28_05027at 5740.582 kb on + strand, within PFR28_05027at 5740.583 kb on - strand, within PFR28_05027at 5740.672 kb on - strand, within PFR28_05027at 5740.695 kb on - strand, within PFR28_05027

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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5,738,017 - PFR28_05024 0.62 -0.1
5,738,086 - PFR28_05024 0.68 +0.2
5,738,121 + PFR28_05024 0.71 +0.1
5,738,457 + +0.7
5,738,490 + +0.3
5,738,490 + +0.6
5,738,491 - -0.2
5,738,547 - PFR28_05025 0.16 -1.2
5,738,615 + PFR28_05025 0.30 +0.7
5,738,615 + PFR28_05025 0.30 -2.2
5,738,615 + PFR28_05025 0.30 -2.7
5,738,615 + PFR28_05025 0.30 -1.0
5,738,616 - PFR28_05025 0.30 -1.3
5,738,616 - PFR28_05025 0.30 -0.7
5,739,103 + PFR28_05026 0.19 -0.4
5,739,104 - PFR28_05026 0.19 +0.3
5,739,104 - PFR28_05026 0.19 -1.5
5,739,109 + PFR28_05026 0.19 +0.8
5,739,109 + PFR28_05026 0.19 -1.0
5,739,110 - PFR28_05026 0.20 -0.3
5,739,232 + PFR28_05026 0.36 +0.1
5,739,232 + PFR28_05026 0.36 +0.8
5,739,232 + PFR28_05026 0.36 +0.6
5,739,232 + PFR28_05026 0.36 -2.9
5,739,232 + PFR28_05026 0.36 -2.0
5,739,232 + PFR28_05026 0.36 -0.6
5,739,232 + PFR28_05026 0.36 +0.1
5,739,233 - PFR28_05026 0.36 +1.6
5,739,233 - PFR28_05026 0.36 +0.1
5,739,233 - PFR28_05026 0.36 +0.0
5,739,233 - PFR28_05026 0.36 +0.8
5,739,233 - PFR28_05026 0.36 -1.4
5,739,233 - PFR28_05026 0.36 +0.9
5,739,233 - PFR28_05026 0.36 +0.3
5,739,233 - PFR28_05026 0.36 +0.0
5,739,233 - PFR28_05026 0.36 -1.7
5,739,263 - PFR28_05026 0.41 +0.5
5,739,286 + PFR28_05026 0.44 +1.1
5,739,287 - PFR28_05026 0.44 +0.4
5,739,673 + -1.6
5,739,673 + +1.0
5,739,674 - -0.5
5,739,674 - -0.1
5,739,674 - +1.4
5,739,674 - +0.3
5,739,674 - +0.6
5,739,688 + +0.6
5,739,688 + +0.6
5,739,688 + -0.2
5,739,688 + +1.0
5,739,688 + -0.9
5,739,689 - +0.5
5,739,689 - +0.5
5,739,848 + PFR28_05027 0.11 +1.4
5,739,848 + PFR28_05027 0.11 -0.0
5,739,848 + PFR28_05027 0.11 -0.8
5,739,848 + PFR28_05027 0.11 -1.1
5,739,849 - PFR28_05027 0.11 -0.4
5,739,849 - PFR28_05027 0.11 +1.3
5,739,849 - PFR28_05027 0.11 +2.2
5,739,893 + PFR28_05027 0.15 -0.9
5,739,893 + PFR28_05027 0.15 +1.3
5,739,894 - PFR28_05027 0.15 +0.1
5,739,894 - PFR28_05027 0.15 +0.0
5,739,894 - PFR28_05027 0.15 +0.1
5,739,906 + PFR28_05027 0.16 -2.0
5,740,493 + PFR28_05027 0.63 -1.0
5,740,582 + PFR28_05027 0.70 +0.5
5,740,582 + PFR28_05027 0.70 -0.1
5,740,583 - PFR28_05027 0.70 +0.5
5,740,672 - PFR28_05027 0.77 -2.2
5,740,695 - PFR28_05027 0.79 +0.7

Or see this region's nucleotide sequence