Strain Fitness in Pseudomonas sp. RS175 around PFR28_03803

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03802 and PFR28_03803 are separated by 86 nucleotidesPFR28_03803 and PFR28_03804 overlap by 4 nucleotidesPFR28_03804 and PFR28_03805 overlap by 4 nucleotides PFR28_03802: PFR28_03802 - Enterobactin exporter EntS, at 4,375,470 to 4,376,696 _03802 PFR28_03803: PFR28_03803 - Aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 4,376,783 to 4,378,984 _03803 PFR28_03804: PFR28_03804 - Aldehyde oxidoreductase FAD-binding subunit PaoB, at 4,378,981 to 4,379,970 _03804 PFR28_03805: PFR28_03805 - Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA, at 4,379,967 to 4,380,500 _03805 Position (kb) 4376 4377 4378 4379Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4375.989 kb on + strand, within PFR28_03802at 4375.990 kb on - strand, within PFR28_03802at 4376.010 kb on + strand, within PFR28_03802at 4376.010 kb on + strand, within PFR28_03802at 4376.011 kb on - strand, within PFR28_03802at 4376.011 kb on - strand, within PFR28_03802at 4376.464 kb on + strand, within PFR28_03802at 4376.464 kb on + strand, within PFR28_03802at 4376.464 kb on + strand, within PFR28_03802at 4376.464 kb on + strand, within PFR28_03802at 4376.464 kb on + strand, within PFR28_03802at 4376.464 kb on + strand, within PFR28_03802at 4376.464 kb on + strand, within PFR28_03802at 4376.465 kb on - strand, within PFR28_03802at 4376.465 kb on - strand, within PFR28_03802at 4376.465 kb on - strand, within PFR28_03802at 4376.465 kb on - strand, within PFR28_03802at 4376.465 kb on - strand, within PFR28_03802at 4376.694 kb on + strandat 4376.695 kb on - strandat 4376.741 kb on - strandat 4376.741 kb on - strandat 4376.841 kb on + strandat 4376.841 kb on + strandat 4376.841 kb on + strandat 4376.841 kb on + strandat 4376.841 kb on + strandat 4376.842 kb on - strandat 4376.842 kb on - strandat 4376.842 kb on - strandat 4376.986 kb on - strandat 4377.219 kb on + strand, within PFR28_03803at 4377.220 kb on - strand, within PFR28_03803at 4377.220 kb on - strand, within PFR28_03803at 4377.220 kb on - strand, within PFR28_03803at 4377.574 kb on + strand, within PFR28_03803at 4377.575 kb on - strand, within PFR28_03803at 4377.575 kb on - strand, within PFR28_03803at 4377.576 kb on + strand, within PFR28_03803at 4377.576 kb on + strand, within PFR28_03803at 4377.576 kb on + strand, within PFR28_03803at 4377.576 kb on + strand, within PFR28_03803at 4377.576 kb on + strand, within PFR28_03803at 4377.576 kb on + strand, within PFR28_03803at 4377.576 kb on + strand, within PFR28_03803at 4377.577 kb on - strand, within PFR28_03803at 4377.577 kb on - strand, within PFR28_03803at 4377.577 kb on - strand, within PFR28_03803at 4377.577 kb on - strand, within PFR28_03803at 4377.577 kb on - strand, within PFR28_03803at 4377.577 kb on - strand, within PFR28_03803at 4377.577 kb on - strand, within PFR28_03803at 4377.577 kb on - strand, within PFR28_03803at 4377.781 kb on - strand, within PFR28_03803at 4377.807 kb on + strand, within PFR28_03803at 4377.841 kb on - strand, within PFR28_03803at 4377.841 kb on - strand, within PFR28_03803at 4377.960 kb on + strand, within PFR28_03803at 4377.960 kb on + strand, within PFR28_03803at 4377.960 kb on + strand, within PFR28_03803at 4377.961 kb on - strand, within PFR28_03803at 4377.961 kb on - strand, within PFR28_03803at 4377.961 kb on - strand, within PFR28_03803at 4377.984 kb on + strand, within PFR28_03803at 4377.984 kb on + strand, within PFR28_03803at 4377.984 kb on + strand, within PFR28_03803at 4377.985 kb on - strand, within PFR28_03803at 4377.985 kb on - strand, within PFR28_03803at 4377.985 kb on - strand, within PFR28_03803at 4378.011 kb on + strand, within PFR28_03803at 4378.011 kb on + strand, within PFR28_03803at 4378.012 kb on - strand, within PFR28_03803at 4378.242 kb on + strand, within PFR28_03803at 4378.335 kb on + strand, within PFR28_03803at 4378.335 kb on + strand, within PFR28_03803at 4378.335 kb on + strand, within PFR28_03803at 4378.335 kb on + strand, within PFR28_03803at 4378.335 kb on + strand, within PFR28_03803at 4378.335 kb on + strand, within PFR28_03803at 4378.335 kb on + strand, within PFR28_03803at 4378.335 kb on + strand, within PFR28_03803at 4378.335 kb on + strand, within PFR28_03803at 4378.335 kb on + strand, within PFR28_03803at 4378.335 kb on + strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.336 kb on - strand, within PFR28_03803at 4378.398 kb on + strand, within PFR28_03803at 4378.398 kb on + strand, within PFR28_03803at 4378.399 kb on - strand, within PFR28_03803at 4378.399 kb on - strand, within PFR28_03803at 4378.455 kb on + strand, within PFR28_03803at 4378.455 kb on + strand, within PFR28_03803at 4378.455 kb on + strand, within PFR28_03803at 4378.456 kb on - strand, within PFR28_03803at 4378.456 kb on - strand, within PFR28_03803at 4378.456 kb on - strand, within PFR28_03803at 4378.456 kb on - strand, within PFR28_03803at 4378.456 kb on - strand, within PFR28_03803at 4378.489 kb on - strand, within PFR28_03803at 4378.590 kb on + strand, within PFR28_03803at 4378.590 kb on + strand, within PFR28_03803at 4378.671 kb on + strand, within PFR28_03803at 4378.671 kb on + strand, within PFR28_03803at 4378.672 kb on - strand, within PFR28_03803at 4378.734 kb on + strand, within PFR28_03803at 4378.746 kb on + strand, within PFR28_03803at 4378.746 kb on + strand, within PFR28_03803at 4378.746 kb on + strand, within PFR28_03803at 4378.771 kb on + strandat 4378.771 kb on + strandat 4378.772 kb on - strandat 4378.772 kb on - strandat 4378.905 kb on + strandat 4378.906 kb on - strandat 4378.906 kb on - strandat 4379.061 kb on + strandat 4379.061 kb on + strandat 4379.061 kb on + strandat 4379.062 kb on - strandat 4379.062 kb on - strandat 4379.267 kb on + strand, within PFR28_03804at 4379.267 kb on + strand, within PFR28_03804at 4379.267 kb on + strand, within PFR28_03804at 4379.267 kb on + strand, within PFR28_03804at 4379.268 kb on - strand, within PFR28_03804at 4379.294 kb on + strand, within PFR28_03804at 4379.294 kb on + strand, within PFR28_03804at 4379.294 kb on + strand, within PFR28_03804at 4379.294 kb on + strand, within PFR28_03804at 4379.295 kb on - strand, within PFR28_03804at 4379.295 kb on - strand, within PFR28_03804at 4379.295 kb on - strand, within PFR28_03804at 4379.295 kb on - strand, within PFR28_03804at 4379.301 kb on + strand, within PFR28_03804at 4379.302 kb on - strand, within PFR28_03804at 4379.609 kb on + strand, within PFR28_03804at 4379.609 kb on + strand, within PFR28_03804at 4379.609 kb on + strand, within PFR28_03804at 4379.610 kb on - strand, within PFR28_03804at 4379.610 kb on - strand, within PFR28_03804at 4379.610 kb on - strand, within PFR28_03804at 4379.615 kb on + strand, within PFR28_03804at 4379.615 kb on + strand, within PFR28_03804at 4379.615 kb on + strand, within PFR28_03804at 4379.615 kb on + strand, within PFR28_03804at 4379.615 kb on + strand, within PFR28_03804at 4379.615 kb on + strand, within PFR28_03804at 4379.615 kb on + strand, within PFR28_03804at 4379.615 kb on + strand, within PFR28_03804at 4379.615 kb on + strand, within PFR28_03804at 4379.615 kb on + strand, within PFR28_03804at 4379.615 kb on + strand, within PFR28_03804at 4379.616 kb on - strand, within PFR28_03804at 4379.616 kb on - strand, within PFR28_03804at 4379.616 kb on - strand, within PFR28_03804at 4379.616 kb on - strand, within PFR28_03804at 4379.616 kb on - strand, within PFR28_03804at 4379.616 kb on - strand, within PFR28_03804at 4379.616 kb on - strand, within PFR28_03804at 4379.616 kb on - strand, within PFR28_03804at 4379.616 kb on - strand, within PFR28_03804at 4379.618 kb on + strand, within PFR28_03804at 4379.618 kb on + strand, within PFR28_03804at 4379.618 kb on + strand, within PFR28_03804at 4379.661 kb on + strand, within PFR28_03804at 4379.662 kb on - strand, within PFR28_03804at 4379.954 kb on + strandat 4379.955 kb on - strandat 4379.955 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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4,375,989 + PFR28_03802 0.42 -0.4
4,375,990 - PFR28_03802 0.42 +0.4
4,376,010 + PFR28_03802 0.44 +2.8
4,376,010 + PFR28_03802 0.44 -0.5
4,376,011 - PFR28_03802 0.44 -0.1
4,376,011 - PFR28_03802 0.44 +0.1
4,376,464 + PFR28_03802 0.81 -0.1
4,376,464 + PFR28_03802 0.81 +0.5
4,376,464 + PFR28_03802 0.81 -0.2
4,376,464 + PFR28_03802 0.81 +0.7
4,376,464 + PFR28_03802 0.81 +1.2
4,376,464 + PFR28_03802 0.81 -1.6
4,376,464 + PFR28_03802 0.81 -0.4
4,376,465 - PFR28_03802 0.81 -1.9
4,376,465 - PFR28_03802 0.81 -1.1
4,376,465 - PFR28_03802 0.81 +0.2
4,376,465 - PFR28_03802 0.81 -0.3
4,376,465 - PFR28_03802 0.81 -0.4
4,376,694 + +0.2
4,376,695 - -0.9
4,376,741 - -0.9
4,376,741 - -2.4
4,376,841 + -0.6
4,376,841 + +0.2
4,376,841 + -0.1
4,376,841 + +1.3
4,376,841 + -0.9
4,376,842 - -0.3
4,376,842 - +1.3
4,376,842 - -1.1
4,376,986 - -3.4
4,377,219 + PFR28_03803 0.20 -1.6
4,377,220 - PFR28_03803 0.20 -0.6
4,377,220 - PFR28_03803 0.20 +0.4
4,377,220 - PFR28_03803 0.20 -1.3
4,377,574 + PFR28_03803 0.36 +0.3
4,377,575 - PFR28_03803 0.36 +0.7
4,377,575 - PFR28_03803 0.36 -0.2
4,377,576 + PFR28_03803 0.36 +0.5
4,377,576 + PFR28_03803 0.36 -0.6
4,377,576 + PFR28_03803 0.36 -0.3
4,377,576 + PFR28_03803 0.36 -0.7
4,377,576 + PFR28_03803 0.36 -0.5
4,377,576 + PFR28_03803 0.36 +0.3
4,377,576 + PFR28_03803 0.36 +0.0
4,377,577 - PFR28_03803 0.36 -0.6
4,377,577 - PFR28_03803 0.36 +0.3
4,377,577 - PFR28_03803 0.36 -0.4
4,377,577 - PFR28_03803 0.36 -2.8
4,377,577 - PFR28_03803 0.36 +0.5
4,377,577 - PFR28_03803 0.36 -0.0
4,377,577 - PFR28_03803 0.36 -0.0
4,377,577 - PFR28_03803 0.36 -0.1
4,377,781 - PFR28_03803 0.45 -0.0
4,377,807 + PFR28_03803 0.47 -0.4
4,377,841 - PFR28_03803 0.48 -2.0
4,377,841 - PFR28_03803 0.48 +0.3
4,377,960 + PFR28_03803 0.53 -1.8
4,377,960 + PFR28_03803 0.53 +0.1
4,377,960 + PFR28_03803 0.53 -0.9
4,377,961 - PFR28_03803 0.53 -0.9
4,377,961 - PFR28_03803 0.53 -0.1
4,377,961 - PFR28_03803 0.53 +0.7
4,377,984 + PFR28_03803 0.55 -1.4
4,377,984 + PFR28_03803 0.55 +0.9
4,377,984 + PFR28_03803 0.55 +0.7
4,377,985 - PFR28_03803 0.55 +0.4
4,377,985 - PFR28_03803 0.55 +0.4
4,377,985 - PFR28_03803 0.55 -1.1
4,378,011 + PFR28_03803 0.56 +0.0
4,378,011 + PFR28_03803 0.56 -0.6
4,378,012 - PFR28_03803 0.56 +0.4
4,378,242 + PFR28_03803 0.66 -1.1
4,378,335 + PFR28_03803 0.70 -0.9
4,378,335 + PFR28_03803 0.70 -0.1
4,378,335 + PFR28_03803 0.70 -0.4
4,378,335 + PFR28_03803 0.70 -0.7
4,378,335 + PFR28_03803 0.70 -0.6
4,378,335 + PFR28_03803 0.70 -1.7
4,378,335 + PFR28_03803 0.70 -0.5
4,378,335 + PFR28_03803 0.70 -0.5
4,378,335 + PFR28_03803 0.70 -1.8
4,378,335 + PFR28_03803 0.70 -1.2
4,378,335 + PFR28_03803 0.70 -0.6
4,378,336 - PFR28_03803 0.71 +0.6
4,378,336 - PFR28_03803 0.71 -0.1
4,378,336 - PFR28_03803 0.71 +0.4
4,378,336 - PFR28_03803 0.71 -0.1
4,378,336 - PFR28_03803 0.71 +1.4
4,378,336 - PFR28_03803 0.71 -0.5
4,378,336 - PFR28_03803 0.71 +0.0
4,378,336 - PFR28_03803 0.71 +0.4
4,378,336 - PFR28_03803 0.71 +0.1
4,378,336 - PFR28_03803 0.71 +1.8
4,378,336 - PFR28_03803 0.71 -2.8
4,378,336 - PFR28_03803 0.71 +0.4
4,378,336 - PFR28_03803 0.71 -0.5
4,378,398 + PFR28_03803 0.73 -2.1
4,378,398 + PFR28_03803 0.73 +0.5
4,378,399 - PFR28_03803 0.73 +1.7
4,378,399 - PFR28_03803 0.73 -0.8
4,378,455 + PFR28_03803 0.76 -2.0
4,378,455 + PFR28_03803 0.76 -0.2
4,378,455 + PFR28_03803 0.76 -0.3
4,378,456 - PFR28_03803 0.76 -1.4
4,378,456 - PFR28_03803 0.76 +1.8
4,378,456 - PFR28_03803 0.76 +0.8
4,378,456 - PFR28_03803 0.76 +0.8
4,378,456 - PFR28_03803 0.76 +0.5
4,378,489 - PFR28_03803 0.77 -2.0
4,378,590 + PFR28_03803 0.82 +0.1
4,378,590 + PFR28_03803 0.82 -1.7
4,378,671 + PFR28_03803 0.86 -0.1
4,378,671 + PFR28_03803 0.86 -0.5
4,378,672 - PFR28_03803 0.86 -1.2
4,378,734 + PFR28_03803 0.89 +0.7
4,378,746 + PFR28_03803 0.89 -0.5
4,378,746 + PFR28_03803 0.89 -1.4
4,378,746 + PFR28_03803 0.89 +0.9
4,378,771 + -0.7
4,378,771 + +0.0
4,378,772 - -1.7
4,378,772 - +0.3
4,378,905 + +0.6
4,378,906 - +1.8
4,378,906 - +0.2
4,379,061 + -0.9
4,379,061 + +1.2
4,379,061 + +0.5
4,379,062 - +1.4
4,379,062 - -2.5
4,379,267 + PFR28_03804 0.29 +1.9
4,379,267 + PFR28_03804 0.29 -1.4
4,379,267 + PFR28_03804 0.29 -0.4
4,379,267 + PFR28_03804 0.29 +0.1
4,379,268 - PFR28_03804 0.29 +0.3
4,379,294 + PFR28_03804 0.32 +0.2
4,379,294 + PFR28_03804 0.32 -0.0
4,379,294 + PFR28_03804 0.32 +0.7
4,379,294 + PFR28_03804 0.32 +0.7
4,379,295 - PFR28_03804 0.32 -0.7
4,379,295 - PFR28_03804 0.32 -1.0
4,379,295 - PFR28_03804 0.32 -1.2
4,379,295 - PFR28_03804 0.32 +2.4
4,379,301 + PFR28_03804 0.32 +0.9
4,379,302 - PFR28_03804 0.32 +1.4
4,379,609 + PFR28_03804 0.63 +0.3
4,379,609 + PFR28_03804 0.63 -1.4
4,379,609 + PFR28_03804 0.63 -0.6
4,379,610 - PFR28_03804 0.64 +0.1
4,379,610 - PFR28_03804 0.64 -0.5
4,379,610 - PFR28_03804 0.64 -0.3
4,379,615 + PFR28_03804 0.64 -1.6
4,379,615 + PFR28_03804 0.64 +0.3
4,379,615 + PFR28_03804 0.64 +1.2
4,379,615 + PFR28_03804 0.64 -1.3
4,379,615 + PFR28_03804 0.64 +0.2
4,379,615 + PFR28_03804 0.64 -0.6
4,379,615 + PFR28_03804 0.64 -2.2
4,379,615 + PFR28_03804 0.64 +1.0
4,379,615 + PFR28_03804 0.64 -0.0
4,379,615 + PFR28_03804 0.64 +0.9
4,379,615 + PFR28_03804 0.64 +0.3
4,379,616 - PFR28_03804 0.64 +0.3
4,379,616 - PFR28_03804 0.64 +0.1
4,379,616 - PFR28_03804 0.64 +0.1
4,379,616 - PFR28_03804 0.64 -0.6
4,379,616 - PFR28_03804 0.64 -0.1
4,379,616 - PFR28_03804 0.64 -0.1
4,379,616 - PFR28_03804 0.64 +0.5
4,379,616 - PFR28_03804 0.64 +0.8
4,379,616 - PFR28_03804 0.64 -0.8
4,379,618 + PFR28_03804 0.64 -1.8
4,379,618 + PFR28_03804 0.64 -1.1
4,379,618 + PFR28_03804 0.64 +0.3
4,379,661 + PFR28_03804 0.69 -0.3
4,379,662 - PFR28_03804 0.69 +1.1
4,379,954 + -2.5
4,379,955 - -1.0
4,379,955 - -0.7

Or see this region's nucleotide sequence