Strain Fitness in Pseudomonas sp. RS175 around PFR28_03193

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,702,374	+				+1.3
3,702,375	-				-1.2
3,702,377	+				-0.2
3,702,377	+				-0.9
3,702,377	+				+1.2
3,702,378	-				+0.3
3,702,390	-				-0.0
3,702,392	+				-0.4
3,702,393	-				-1.3
3,702,393	-				-0.0
3,702,393	-				+1.3
3,702,498	+				+0.7
3,702,530	+				-0.3
3,702,531	-				-0.1
3,702,531	-				+1.1
3,702,531	-				-1.1
3,702,553	+				-2.2
3,702,553	+				+0.5
3,702,554	-				+1.5
3,702,638	+				-0.8
3,702,638	+				-1.0
3,702,638	+				+1.1
3,702,638	+				+0.5
3,702,638	+				-0.1
3,702,638	+				-0.4
3,702,638	+				+1.1
3,702,638	+				-0.1
3,702,638	+				+0.8
3,702,638	+				+0.9
3,702,639	-				-0.8
3,702,639	-				-2.7
3,702,639	-				-2.1
3,702,639	-				+0.0
3,702,639	-				-2.7
3,702,639	-				-0.2
3,702,639	-				-1.9
3,702,639	-				+0.6
3,702,639	-				-0.9
3,702,639	-				-1.5
3,702,639	-				-2.0
3,702,639	-				-1.5
3,702,642	+				+0.7
3,702,642	+				+0.3
3,702,642	+				-0.2
3,702,642	+				-0.7
3,702,642	+				+1.4
3,702,642	+				-0.4
3,702,642	+				-0.2
3,702,642	+				+0.1
3,702,642	+				-1.0
3,702,642	+				+0.2
3,702,643	-				-1.2
3,702,643	-				+1.3
3,702,643	-				-0.2
3,702,643	-				+2.1
3,702,643	-				+2.3
3,702,643	-				-1.7
3,702,643	-				+1.6
3,702,643	-				-0.0
3,702,643	-				+0.6
3,702,643	-				+0.4
3,702,646	+				-0.4
3,702,646	+				+0.1
3,702,646	+				+0.3
3,702,646	+				+0.9
3,702,647	-				-0.2
3,702,670	+				-1.0
3,702,670	+				+0.7
3,702,670	+				-2.2
3,702,670	+				+1.2
3,702,670	+				-0.5
3,702,670	+				-0.5
3,702,670	+				+0.2
3,702,670	+				+1.1
3,702,670	+				-0.1
3,702,670	+				-1.5
3,702,670	+				-0.7
3,702,670	+				+0.4
3,702,670	+				+0.4
3,702,670	+				-3.1
3,702,670	+				+0.2
3,702,671	-				-0.3
3,702,671	-				-0.2
3,702,671	-				+2.4
3,702,671	-				-0.0
3,702,671	-				-1.7
3,702,671	-				-1.0
3,702,671	-				-0.4
3,702,671	-				-0.3
3,702,671	-				+1.6
3,702,671	-				+1.1
3,702,671	-				+0.6
3,702,671	-				+3.4
3,702,672	+				+0.2
3,702,672	+				-1.2
3,702,672	+				+0.1
3,702,672	+				+0.3
3,702,672	+				-0.0
3,702,673	-				+1.4
3,702,673	-				+1.7
3,702,673	-				-0.1
3,702,673	-				-0.2
3,702,673	-				-0.9
3,702,673	-				-1.4
3,702,673	-				-2.2
3,702,673	-				+0.1
3,702,673	-				-0.7
3,702,673	-				-3.4
3,702,673	-				-0.9
3,702,673	-				+1.8
3,702,750	+				+0.2
3,702,750	+				-0.6
3,702,751	-				+0.6
3,702,767	+				-1.0
3,702,768	-				+0.6
3,702,782	+				-1.1
3,702,782	+				+0.5
3,702,782	+				-1.6
3,702,783	-				-0.6
3,702,783	-				-1.0
3,702,783	-				-1.3
3,702,948	+		PFR28_03192	0.67	-2.7
3,702,948	+		PFR28_03192	0.67	-0.8
3,702,961	-		PFR28_03192	0.72	-0.5
3,703,074	-				+0.3
3,703,112	+				+1.1
3,703,112	+				-1.3
3,703,112	+				-1.2
3,703,124	+				+1.0
3,703,124	+				-0.3
3,703,124	+				+0.1
3,703,125	-				-0.1
3,703,125	-				+0.1
3,703,131	+				+0.0
3,703,180	+				+0.3
3,703,280	+				-2.3
3,703,281	-				-1.5
3,703,296	+				+0.7
3,703,296	+				-0.3
3,703,296	+				+0.1
3,703,297	-				+0.8
3,703,297	-				+1.0
3,703,297	-				+0.4
3,703,327	+				-1.6
3,703,327	+				-0.6
3,703,328	-				-0.1
3,703,328	-				+0.3
3,703,328	-				-0.7
3,703,328	-				-1.5
3,703,341	+				+0.1
3,703,352	-		PFR28_03193	0.11	-0.1
3,703,352	-		PFR28_03193	0.11	-0.8
3,703,498	+		PFR28_03193	0.42	+0.7
3,703,498	+		PFR28_03193	0.42	+1.2
3,703,498	+		PFR28_03193	0.42	+0.2
3,703,498	+		PFR28_03193	0.42	-1.8
3,703,499	-		PFR28_03193	0.42	-1.2
3,703,499	-		PFR28_03193	0.42	-0.2
3,703,499	-		PFR28_03193	0.42	+0.8
3,703,499	-		PFR28_03193	0.42	-0.2
3,703,499	-		PFR28_03193	0.42	+1.5
3,703,802	+				-2.2
3,703,802	+				+0.1
3,703,803	-				+0.2
3,703,803	-				-1.8
3,703,863	+				+0.5
3,703,864	-				-0.2
3,703,864	-				+1.6
3,703,864	-				-1.7
3,703,864	-				+0.3
3,703,865	+				-3.0
3,703,865	+				-0.9
3,703,882	+				+0.4
3,703,883	-				-0.5
3,703,888	+				+0.2
3,703,919	+				-0.0
3,703,919	+				+0.5
3,703,920	-				-0.6
3,703,920	-				-0.1
3,703,965	+				-0.4
3,703,965	+				-0.8
3,703,966	-				-0.9
3,703,966	-				+1.8
3,704,081	+		PFR28_03194	0.12	+1.3
3,704,081	+		PFR28_03194	0.12	-0.3
3,704,081	+		PFR28_03194	0.12	+0.5
3,704,081	+		PFR28_03194	0.12	-2.1
3,704,081	+		PFR28_03194	0.12	+0.5
3,704,082	-		PFR28_03194	0.12	+1.6
3,704,239	+		PFR28_03194	0.25	+2.6
3,704,239	+		PFR28_03194	0.25	+0.4
3,704,239	+		PFR28_03194	0.25	-0.1
3,704,239	+		PFR28_03194	0.25	-0.0
3,704,239	+		PFR28_03194	0.25	-0.7
3,704,240	-		PFR28_03194	0.25	-1.2
3,704,240	-		PFR28_03194	0.25	-0.1
3,704,242	+		PFR28_03194	0.25	+1.2
3,704,242	+		PFR28_03194	0.25	-0.6
3,704,242	+		PFR28_03194	0.25	-1.4
3,704,242	+		PFR28_03194	0.25	+0.1
3,704,242	+		PFR28_03194	0.25	+1.3
3,704,242	+		PFR28_03194	0.25	-0.1
3,704,242	+		PFR28_03194	0.25	+1.0
3,704,242	+		PFR28_03194	0.25	-0.9
3,704,242	+		PFR28_03194	0.25	+0.2
3,704,242	+		PFR28_03194	0.25	-0.0
3,704,242	+		PFR28_03194	0.25	-0.3
3,704,242	+		PFR28_03194	0.25	+1.0
3,704,242	+		PFR28_03194	0.25	+1.6
3,704,242	+		PFR28_03194	0.25	+0.4
3,704,242	+		PFR28_03194	0.25	+0.1
3,704,242	+		PFR28_03194	0.25	+1.2
3,704,243	-		PFR28_03194	0.25	-0.2
3,704,243	-		PFR28_03194	0.25	+0.7
3,704,243	-		PFR28_03194	0.25	-2.2
3,704,243	-		PFR28_03194	0.25	+4.7
3,704,243	-		PFR28_03194	0.25	+0.5
3,704,243	-		PFR28_03194	0.25	-0.6
3,704,243	-		PFR28_03194	0.25	-1.2
3,704,243	-		PFR28_03194	0.25	+1.5
3,704,243	-		PFR28_03194	0.25	-1.1
3,704,243	-		PFR28_03194	0.25	-0.4
3,704,243	-		PFR28_03194	0.25	+0.6
3,704,243	-		PFR28_03194	0.25	+1.8
3,704,243	-		PFR28_03194	0.25	-1.8
3,704,243	-		PFR28_03194	0.25	-0.0
3,704,243	-		PFR28_03194	0.25	+0.5
3,704,243	-		PFR28_03194	0.25	+0.8
3,704,243	-		PFR28_03194	0.25	-1.2
3,704,254	-		PFR28_03194	0.26	-0.5
3,704,287	+		PFR28_03194	0.28	+3.6
3,704,287	+		PFR28_03194	0.28	-0.1
3,704,314	+		PFR28_03194	0.30	+0.1
3,704,392	+		PFR28_03194	0.36	+0.1
3,704,392	+		PFR28_03194	0.36	+0.9
3,704,392	+		PFR28_03194	0.36	+0.6
3,704,393	-		PFR28_03194	0.37	+0.1
3,704,393	-		PFR28_03194	0.37	-0.2
3,704,533	+		PFR28_03194	0.47	-3.2
3,704,540	-		PFR28_03194	0.48	-0.5
3,704,593	+		PFR28_03194	0.52	-0.3
3,704,593	+		PFR28_03194	0.52	+0.6
3,704,593	+		PFR28_03194	0.52	-1.4
3,704,594	-		PFR28_03194	0.52	-0.8
3,704,594	-		PFR28_03194	0.52	+0.3
3,704,611	+		PFR28_03194	0.54	+1.2
3,704,611	+		PFR28_03194	0.54	-0.1
3,704,611	+		PFR28_03194	0.54	+1.1
3,704,612	-		PFR28_03194	0.54	-1.8
3,704,612	-		PFR28_03194	0.54	+0.6
3,704,612	-		PFR28_03194	0.54	-2.8
3,704,683	+		PFR28_03194	0.59	-0.6
3,704,684	-		PFR28_03194	0.59	-0.4
3,704,703	+		PFR28_03194	0.61	-1.4
3,704,703	+		PFR28_03194	0.61	+1.8
3,704,703	+		PFR28_03194	0.61	-1.2
3,704,703	+		PFR28_03194	0.61	-0.3
3,704,704	-		PFR28_03194	0.61	-1.2
3,704,765	-		PFR28_03194	0.65	+0.8
3,704,765	-		PFR28_03194	0.65	-1.2