Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS23265 and ABIE41_RS23270 are separated by 104 nucleotides ABIE41_RS23270 and ABIE41_RS23275 are separated by 265 nucleotides ABIE41_RS23275 and ABIE41_RS23280 are separated by 36 nucleotides ABIE41_RS23280 and ABIE41_RS23285 are separated by 83 nucleotides
ABIE41_RS23265: ABIE41_RS23265 - bifunctional riboflavin kinase/FAD synthetase, at 4,788,621 to 4,789,589
_RS23265
ABIE41_RS23270: ABIE41_RS23270 - MaoC family dehydratase, at 4,789,694 to 4,790,137
_RS23270
ABIE41_RS23275: ABIE41_RS23275 - response regulator, at 4,790,403 to 4,790,786
_RS23275
ABIE41_RS23280: ABIE41_RS23280 - TIGR01459 family HAD-type hydrolase, at 4,790,823 to 4,791,692
_RS23280
ABIE41_RS23285: ABIE41_RS23285 - EAL domain-containing protein, at 4,791,776 to 4,793,269
_RS23285
Position (kb) 4790
4791 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4789.884 kb on + strand, within ABIE41_RS23270 at 4789.884 kb on + strand, within ABIE41_RS23270 at 4789.885 kb on - strand, within ABIE41_RS23270 at 4789.885 kb on - strand, within ABIE41_RS23270 at 4789.978 kb on + strand, within ABIE41_RS23270 at 4789.978 kb on + strand, within ABIE41_RS23270 at 4789.979 kb on - strand, within ABIE41_RS23270 at 4789.979 kb on - strand, within ABIE41_RS23270 at 4790.119 kb on + strand at 4790.120 kb on - strand at 4790.121 kb on + strand at 4790.121 kb on + strand at 4790.121 kb on + strand at 4790.122 kb on - strand at 4790.122 kb on - strand at 4790.292 kb on - strand at 4790.316 kb on + strand at 4790.721 kb on + strand, within ABIE41_RS23275 at 4790.721 kb on + strand, within ABIE41_RS23275 at 4790.721 kb on + strand, within ABIE41_RS23275 at 4790.721 kb on + strand, within ABIE41_RS23275 at 4790.722 kb on - strand, within ABIE41_RS23275 at 4790.722 kb on - strand, within ABIE41_RS23275 at 4790.722 kb on - strand, within ABIE41_RS23275 at 4790.722 kb on - strand, within ABIE41_RS23275 at 4790.848 kb on + strand at 4791.070 kb on + strand, within ABIE41_RS23280 at 4791.071 kb on - strand, within ABIE41_RS23280 at 4791.097 kb on + strand, within ABIE41_RS23280 at 4791.124 kb on + strand, within ABIE41_RS23280 at 4791.124 kb on + strand, within ABIE41_RS23280 at 4791.125 kb on - strand, within ABIE41_RS23280 at 4791.125 kb on - strand, within ABIE41_RS23280 at 4791.244 kb on + strand, within ABIE41_RS23280 at 4791.244 kb on + strand, within ABIE41_RS23280 at 4791.244 kb on + strand, within ABIE41_RS23280 at 4791.244 kb on + strand, within ABIE41_RS23280 at 4791.245 kb on - strand, within ABIE41_RS23280 at 4791.245 kb on - strand, within ABIE41_RS23280 at 4791.277 kb on - strand, within ABIE41_RS23280 at 4791.295 kb on + strand, within ABIE41_RS23280 at 4791.295 kb on + strand, within ABIE41_RS23280 at 4791.295 kb on + strand, within ABIE41_RS23280 at 4791.296 kb on - strand, within ABIE41_RS23280 at 4791.296 kb on - strand, within ABIE41_RS23280 at 4791.727 kb on + strand at 4791.727 kb on + strand at 4791.727 kb on + strand at 4791.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 4,789,884 + ABIE41_RS23270 0.43 -0.6 4,789,884 + ABIE41_RS23270 0.43 -0.3 4,789,885 - ABIE41_RS23270 0.43 +2.2 4,789,885 - ABIE41_RS23270 0.43 -0.1 4,789,978 + ABIE41_RS23270 0.64 +0.7 4,789,978 + ABIE41_RS23270 0.64 -0.2 4,789,979 - ABIE41_RS23270 0.64 -0.3 4,789,979 - ABIE41_RS23270 0.64 +1.6 4,790,119 + -0.3 4,790,120 - +0.3 4,790,121 + +1.3 4,790,121 + -0.1 4,790,121 + -0.2 4,790,122 - +1.1 4,790,122 - -0.3 4,790,292 - -1.5 4,790,316 + -0.1 4,790,721 + ABIE41_RS23275 0.83 -0.3 4,790,721 + ABIE41_RS23275 0.83 +0.4 4,790,721 + ABIE41_RS23275 0.83 +2.3 4,790,721 + ABIE41_RS23275 0.83 -0.2 4,790,722 - ABIE41_RS23275 0.83 -0.8 4,790,722 - ABIE41_RS23275 0.83 +2.0 4,790,722 - ABIE41_RS23275 0.83 -0.0 4,790,722 - ABIE41_RS23275 0.83 +0.6 4,790,848 + +2.0 4,791,070 + ABIE41_RS23280 0.28 -2.0 4,791,071 - ABIE41_RS23280 0.29 -1.3 4,791,097 + ABIE41_RS23280 0.31 -2.3 4,791,124 + ABIE41_RS23280 0.35 -1.7 4,791,124 + ABIE41_RS23280 0.35 -0.8 4,791,125 - ABIE41_RS23280 0.35 -3.9 4,791,125 - ABIE41_RS23280 0.35 -0.5 4,791,244 + ABIE41_RS23280 0.48 -0.8 4,791,244 + ABIE41_RS23280 0.48 -0.7 4,791,244 + ABIE41_RS23280 0.48 -1.9 4,791,244 + ABIE41_RS23280 0.48 +0.7 4,791,245 - ABIE41_RS23280 0.49 +1.0 4,791,245 - ABIE41_RS23280 0.49 -1.2 4,791,277 - ABIE41_RS23280 0.52 -0.9 4,791,295 + ABIE41_RS23280 0.54 -0.4 4,791,295 + ABIE41_RS23280 0.54 -1.6 4,791,295 + ABIE41_RS23280 0.54 -0.9 4,791,296 - ABIE41_RS23280 0.54 -0.8 4,791,296 - ABIE41_RS23280 0.54 -1.7 4,791,727 + -2.2 4,791,727 + -0.1 4,791,727 + +0.4 4,791,728 - +0.5
Or see this region's nucleotide sequence