Strain Fitness in Bosea sp. OAE506 around ABIE41_RS23260

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS23250 and ABIE41_RS23255 are separated by 75 nucleotidesABIE41_RS23255 and ABIE41_RS23260 overlap by 4 nucleotidesABIE41_RS23260 and ABIE41_RS23265 are separated by 327 nucleotides ABIE41_RS23250: ABIE41_RS23250 - hypothetical protein, at 4,784,122 to 4,784,766 _RS23250 ABIE41_RS23255: ABIE41_RS23255 - signal peptidase II, at 4,784,842 to 4,785,324 _RS23255 ABIE41_RS23260: ABIE41_RS23260 - isoleucine--tRNA ligase, at 4,785,321 to 4,788,293 _RS23260 ABIE41_RS23265: ABIE41_RS23265 - bifunctional riboflavin kinase/FAD synthetase, at 4,788,621 to 4,789,589 _RS23265 Position (kb) 4785 4786 4787 4788 4789Strain fitness (log2 ratio) -2 -1 0 1 2at 4784.363 kb on + strand, within ABIE41_RS23250at 4784.363 kb on + strand, within ABIE41_RS23250at 4784.364 kb on - strand, within ABIE41_RS23250at 4784.364 kb on - strand, within ABIE41_RS23250at 4784.364 kb on - strand, within ABIE41_RS23250at 4784.787 kb on - strandat 4784.787 kb on - strandat 4784.879 kb on + strandat 4784.879 kb on + strandat 4784.880 kb on - strandat 4784.880 kb on - strandat 4788.434 kb on - strandat 4788.434 kb on - strandat 4788.518 kb on + strandat 4788.519 kb on - strandat 4788.608 kb on + strandat 4788.609 kb on - strandat 4788.609 kb on - strandat 4788.609 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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4,784,363 + ABIE41_RS23250 0.37 -0.1
4,784,363 + ABIE41_RS23250 0.37 -0.2
4,784,364 - ABIE41_RS23250 0.38 +0.2
4,784,364 - ABIE41_RS23250 0.38 +0.8
4,784,364 - ABIE41_RS23250 0.38 +0.1
4,784,787 - +0.1
4,784,787 - -0.2
4,784,879 + +2.0
4,784,879 + -2.4
4,784,880 - -1.2
4,784,880 - -0.6
4,788,434 - -0.5
4,788,434 - -0.0
4,788,518 + -0.6
4,788,519 - +0.2
4,788,608 + -0.5
4,788,609 - -0.6
4,788,609 - +0.6
4,788,609 - -0.1

Or see this region's nucleotide sequence