Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS23250 and ABIE41_RS23255 are separated by 75 nucleotides ABIE41_RS23255 and ABIE41_RS23260 overlap by 4 nucleotides ABIE41_RS23260 and ABIE41_RS23265 are separated by 327 nucleotides
ABIE41_RS23250: ABIE41_RS23250 - hypothetical protein, at 4,784,122 to 4,784,766
_RS23250
ABIE41_RS23255: ABIE41_RS23255 - signal peptidase II, at 4,784,842 to 4,785,324
_RS23255
ABIE41_RS23260: ABIE41_RS23260 - isoleucine--tRNA ligase, at 4,785,321 to 4,788,293
_RS23260
ABIE41_RS23265: ABIE41_RS23265 - bifunctional riboflavin kinase/FAD synthetase, at 4,788,621 to 4,789,589
_RS23265
Position (kb)
4785
4786
4787
4788
4789 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4784.363 kb on + strand, within ABIE41_RS23250 at 4784.363 kb on + strand, within ABIE41_RS23250 at 4784.364 kb on - strand, within ABIE41_RS23250 at 4784.364 kb on - strand, within ABIE41_RS23250 at 4784.364 kb on - strand, within ABIE41_RS23250 at 4784.787 kb on - strand at 4784.787 kb on - strand at 4784.879 kb on + strand at 4784.879 kb on + strand at 4784.880 kb on - strand at 4784.880 kb on - strand at 4788.434 kb on - strand at 4788.434 kb on - strand at 4788.518 kb on + strand at 4788.519 kb on - strand at 4788.608 kb on + strand at 4788.609 kb on - strand at 4788.609 kb on - strand at 4788.609 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 4,784,363 + ABIE41_RS23250 0.37 -0.1 4,784,363 + ABIE41_RS23250 0.37 -0.2 4,784,364 - ABIE41_RS23250 0.38 +0.2 4,784,364 - ABIE41_RS23250 0.38 +0.8 4,784,364 - ABIE41_RS23250 0.38 +0.1 4,784,787 - +0.1 4,784,787 - -0.2 4,784,879 + +2.0 4,784,879 + -2.4 4,784,880 - -1.2 4,784,880 - -0.6 4,788,434 - -0.5 4,788,434 - -0.0 4,788,518 + -0.6 4,788,519 - +0.2 4,788,608 + -0.5 4,788,609 - -0.6 4,788,609 - +0.6 4,788,609 - -0.1
Or see this region's nucleotide sequence