Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17950 and ABIE41_RS17955 are separated by 298 nucleotides ABIE41_RS17955 and ABIE41_RS17960 are separated by 5 nucleotides ABIE41_RS17960 and ABIE41_RS17965 are separated by 3 nucleotides ABIE41_RS17965 and ABIE41_RS17970 are separated by 143 nucleotides
ABIE41_RS17950: ABIE41_RS17950 - NADH-quinone oxidoreductase subunit A, at 3,695,881 to 3,696,246
_RS17950
ABIE41_RS17955: ABIE41_RS17955 - HdeA/HdeB family chaperone, at 3,696,545 to 3,696,859
_RS17955
ABIE41_RS17960: ABIE41_RS17960 - D-Ala-D-Ala carboxypeptidase family metallohydrolase, at 3,696,865 to 3,697,494
_RS17960
ABIE41_RS17965: ABIE41_RS17965 - substrate-binding domain-containing protein, at 3,697,498 to 3,698,268
_RS17965
ABIE41_RS17970: ABIE41_RS17970 - ATP-binding protein, at 3,698,412 to 3,701,060
_RS17970
Position (kb)
3696
3697
3698 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3696.472 kb on - strand at 3697.279 kb on + strand, within ABIE41_RS17960 at 3697.280 kb on - strand, within ABIE41_RS17960 at 3697.280 kb on - strand, within ABIE41_RS17960 at 3697.340 kb on - strand, within ABIE41_RS17960 at 3697.444 kb on + strand at 3697.623 kb on - strand, within ABIE41_RS17965 at 3697.623 kb on - strand, within ABIE41_RS17965 at 3697.623 kb on - strand, within ABIE41_RS17965 at 3697.623 kb on - strand, within ABIE41_RS17965 at 3697.631 kb on + strand, within ABIE41_RS17965 at 3697.632 kb on - strand, within ABIE41_RS17965 at 3697.632 kb on - strand, within ABIE41_RS17965 at 3697.823 kb on + strand, within ABIE41_RS17965 at 3697.823 kb on + strand, within ABIE41_RS17965 at 3697.824 kb on - strand, within ABIE41_RS17965 at 3697.824 kb on - strand, within ABIE41_RS17965 at 3697.824 kb on - strand, within ABIE41_RS17965 at 3697.824 kb on - strand, within ABIE41_RS17965 at 3697.824 kb on - strand, within ABIE41_RS17965 at 3697.824 kb on - strand, within ABIE41_RS17965 at 3697.824 kb on - strand, within ABIE41_RS17965 at 3697.824 kb on - strand, within ABIE41_RS17965 at 3697.824 kb on - strand, within ABIE41_RS17965 at 3697.858 kb on - strand, within ABIE41_RS17965 at 3697.859 kb on + strand, within ABIE41_RS17965 at 3698.320 kb on + strand at 3698.320 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 3,696,472 - -0.2 3,697,279 + ABIE41_RS17960 0.66 -0.6 3,697,280 - ABIE41_RS17960 0.66 +1.7 3,697,280 - ABIE41_RS17960 0.66 +0.3 3,697,340 - ABIE41_RS17960 0.75 +0.6 3,697,444 + -0.1 3,697,623 - ABIE41_RS17965 0.16 -0.5 3,697,623 - ABIE41_RS17965 0.16 -0.2 3,697,623 - ABIE41_RS17965 0.16 -0.0 3,697,623 - ABIE41_RS17965 0.16 +1.5 3,697,631 + ABIE41_RS17965 0.17 +0.1 3,697,632 - ABIE41_RS17965 0.17 -0.3 3,697,632 - ABIE41_RS17965 0.17 -0.4 3,697,823 + ABIE41_RS17965 0.42 +0.0 3,697,823 + ABIE41_RS17965 0.42 -0.1 3,697,824 - ABIE41_RS17965 0.42 -0.2 3,697,824 - ABIE41_RS17965 0.42 +0.2 3,697,824 - ABIE41_RS17965 0.42 -1.7 3,697,824 - ABIE41_RS17965 0.42 -0.2 3,697,824 - ABIE41_RS17965 0.42 +0.4 3,697,824 - ABIE41_RS17965 0.42 -0.3 3,697,824 - ABIE41_RS17965 0.42 +0.3 3,697,824 - ABIE41_RS17965 0.42 -0.8 3,697,824 - ABIE41_RS17965 0.42 +0.4 3,697,858 - ABIE41_RS17965 0.47 +4.0 3,697,859 + ABIE41_RS17965 0.47 +0.4 3,698,320 + +0.2 3,698,320 + +1.8
Or see this region's nucleotide sequence