Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17960

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17950 and ABIE41_RS17955 are separated by 298 nucleotidesABIE41_RS17955 and ABIE41_RS17960 are separated by 5 nucleotidesABIE41_RS17960 and ABIE41_RS17965 are separated by 3 nucleotidesABIE41_RS17965 and ABIE41_RS17970 are separated by 143 nucleotides ABIE41_RS17950: ABIE41_RS17950 - NADH-quinone oxidoreductase subunit A, at 3,695,881 to 3,696,246 _RS17950 ABIE41_RS17955: ABIE41_RS17955 - HdeA/HdeB family chaperone, at 3,696,545 to 3,696,859 _RS17955 ABIE41_RS17960: ABIE41_RS17960 - D-Ala-D-Ala carboxypeptidase family metallohydrolase, at 3,696,865 to 3,697,494 _RS17960 ABIE41_RS17965: ABIE41_RS17965 - substrate-binding domain-containing protein, at 3,697,498 to 3,698,268 _RS17965 ABIE41_RS17970: ABIE41_RS17970 - ATP-binding protein, at 3,698,412 to 3,701,060 _RS17970 Position (kb) 3696 3697 3698Strain fitness (log2 ratio) -1 0 1 2 3 4at 3696.472 kb on - strandat 3697.279 kb on + strand, within ABIE41_RS17960at 3697.280 kb on - strand, within ABIE41_RS17960at 3697.280 kb on - strand, within ABIE41_RS17960at 3697.340 kb on - strand, within ABIE41_RS17960at 3697.444 kb on + strandat 3697.623 kb on - strand, within ABIE41_RS17965at 3697.623 kb on - strand, within ABIE41_RS17965at 3697.623 kb on - strand, within ABIE41_RS17965at 3697.623 kb on - strand, within ABIE41_RS17965at 3697.631 kb on + strand, within ABIE41_RS17965at 3697.632 kb on - strand, within ABIE41_RS17965at 3697.632 kb on - strand, within ABIE41_RS17965at 3697.823 kb on + strand, within ABIE41_RS17965at 3697.823 kb on + strand, within ABIE41_RS17965at 3697.824 kb on - strand, within ABIE41_RS17965at 3697.824 kb on - strand, within ABIE41_RS17965at 3697.824 kb on - strand, within ABIE41_RS17965at 3697.824 kb on - strand, within ABIE41_RS17965at 3697.824 kb on - strand, within ABIE41_RS17965at 3697.824 kb on - strand, within ABIE41_RS17965at 3697.824 kb on - strand, within ABIE41_RS17965at 3697.824 kb on - strand, within ABIE41_RS17965at 3697.824 kb on - strand, within ABIE41_RS17965at 3697.858 kb on - strand, within ABIE41_RS17965at 3697.859 kb on + strand, within ABIE41_RS17965at 3698.320 kb on + strandat 3698.320 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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3,696,472 - -0.2
3,697,279 + ABIE41_RS17960 0.66 -0.6
3,697,280 - ABIE41_RS17960 0.66 +1.7
3,697,280 - ABIE41_RS17960 0.66 +0.3
3,697,340 - ABIE41_RS17960 0.75 +0.6
3,697,444 + -0.1
3,697,623 - ABIE41_RS17965 0.16 -0.5
3,697,623 - ABIE41_RS17965 0.16 -0.2
3,697,623 - ABIE41_RS17965 0.16 -0.0
3,697,623 - ABIE41_RS17965 0.16 +1.5
3,697,631 + ABIE41_RS17965 0.17 +0.1
3,697,632 - ABIE41_RS17965 0.17 -0.3
3,697,632 - ABIE41_RS17965 0.17 -0.4
3,697,823 + ABIE41_RS17965 0.42 +0.0
3,697,823 + ABIE41_RS17965 0.42 -0.1
3,697,824 - ABIE41_RS17965 0.42 -0.2
3,697,824 - ABIE41_RS17965 0.42 +0.2
3,697,824 - ABIE41_RS17965 0.42 -1.7
3,697,824 - ABIE41_RS17965 0.42 -0.2
3,697,824 - ABIE41_RS17965 0.42 +0.4
3,697,824 - ABIE41_RS17965 0.42 -0.3
3,697,824 - ABIE41_RS17965 0.42 +0.3
3,697,824 - ABIE41_RS17965 0.42 -0.8
3,697,824 - ABIE41_RS17965 0.42 +0.4
3,697,858 - ABIE41_RS17965 0.47 +4.0
3,697,859 + ABIE41_RS17965 0.47 +0.4
3,698,320 + +0.2
3,698,320 + +1.8

Or see this region's nucleotide sequence