Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16285

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16280 and ABIE41_RS16285 overlap by 4 nucleotidesABIE41_RS16285 and ABIE41_RS16290 are separated by 69 nucleotides ABIE41_RS16280: ABIE41_RS16280 - ABC transporter permease subunit, at 3,345,229 to 3,346,995 _RS16280 ABIE41_RS16285: ABIE41_RS16285 - ABC transporter ATP-binding protein, at 3,346,992 to 3,348,005 _RS16285 ABIE41_RS16290: ABIE41_RS16290 - ABC transporter substrate-binding protein, at 3,348,075 to 3,349,145 _RS16290 Position (kb) 3346 3347 3348 3349Strain fitness (log2 ratio) -2 -1 0 1 2at 3346.077 kb on + strand, within ABIE41_RS16280at 3346.160 kb on + strand, within ABIE41_RS16280at 3346.161 kb on - strand, within ABIE41_RS16280at 3346.161 kb on - strand, within ABIE41_RS16280at 3346.376 kb on + strand, within ABIE41_RS16280at 3346.634 kb on + strand, within ABIE41_RS16280at 3346.635 kb on - strand, within ABIE41_RS16280at 3346.635 kb on - strand, within ABIE41_RS16280at 3346.635 kb on - strand, within ABIE41_RS16280at 3346.682 kb on + strand, within ABIE41_RS16280at 3346.682 kb on + strand, within ABIE41_RS16280at 3346.682 kb on + strand, within ABIE41_RS16280at 3346.682 kb on + strand, within ABIE41_RS16280at 3346.683 kb on - strand, within ABIE41_RS16280at 3346.683 kb on - strand, within ABIE41_RS16280at 3346.683 kb on - strand, within ABIE41_RS16280at 3346.683 kb on - strand, within ABIE41_RS16280at 3346.683 kb on - strand, within ABIE41_RS16280at 3346.709 kb on + strand, within ABIE41_RS16280at 3346.709 kb on + strand, within ABIE41_RS16280at 3346.791 kb on - strand, within ABIE41_RS16280at 3346.817 kb on + strand, within ABIE41_RS16280at 3346.817 kb on + strand, within ABIE41_RS16280at 3346.817 kb on + strand, within ABIE41_RS16280at 3346.817 kb on + strand, within ABIE41_RS16280at 3346.818 kb on - strand, within ABIE41_RS16280at 3346.818 kb on - strand, within ABIE41_RS16280at 3347.080 kb on - strandat 3347.137 kb on + strand, within ABIE41_RS16285at 3347.137 kb on + strand, within ABIE41_RS16285at 3347.137 kb on + strand, within ABIE41_RS16285at 3347.138 kb on - strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.366 kb on - strand, within ABIE41_RS16285at 3347.366 kb on - strand, within ABIE41_RS16285at 3347.366 kb on - strand, within ABIE41_RS16285at 3347.464 kb on + strand, within ABIE41_RS16285at 3347.464 kb on + strand, within ABIE41_RS16285at 3347.465 kb on - strand, within ABIE41_RS16285at 3347.516 kb on + strand, within ABIE41_RS16285at 3347.517 kb on - strand, within ABIE41_RS16285at 3347.517 kb on - strand, within ABIE41_RS16285at 3347.581 kb on + strand, within ABIE41_RS16285at 3347.582 kb on - strand, within ABIE41_RS16285at 3347.779 kb on + strand, within ABIE41_RS16285at 3347.780 kb on - strand, within ABIE41_RS16285at 3347.780 kb on - strand, within ABIE41_RS16285at 3348.217 kb on + strand, within ABIE41_RS16290at 3348.557 kb on - strand, within ABIE41_RS16290at 3348.725 kb on - strand, within ABIE41_RS16290at 3348.742 kb on + strand, within ABIE41_RS16290at 3348.742 kb on + strand, within ABIE41_RS16290at 3348.743 kb on - strand, within ABIE41_RS16290at 3348.743 kb on - strand, within ABIE41_RS16290at 3348.743 kb on - strand, within ABIE41_RS16290at 3348.869 kb on + strand, within ABIE41_RS16290at 3348.869 kb on + strand, within ABIE41_RS16290at 3348.870 kb on - strand, within ABIE41_RS16290at 3348.870 kb on - strand, within ABIE41_RS16290at 3348.870 kb on - strand, within ABIE41_RS16290at 3348.871 kb on + strand, within ABIE41_RS16290at 3348.872 kb on - strand, within ABIE41_RS16290at 3348.872 kb on - strand, within ABIE41_RS16290at 3348.872 kb on - strand, within ABIE41_RS16290at 3348.872 kb on - strand, within ABIE41_RS16290at 3348.872 kb on - strand, within ABIE41_RS16290at 3348.970 kb on + strand, within ABIE41_RS16290at 3348.970 kb on + strand, within ABIE41_RS16290at 3348.970 kb on + strand, within ABIE41_RS16290at 3348.971 kb on - strand, within ABIE41_RS16290at 3348.971 kb on - strand, within ABIE41_RS16290at 3348.971 kb on - strand, within ABIE41_RS16290at 3348.971 kb on - strand, within ABIE41_RS16290at 3348.971 kb on - strand, within ABIE41_RS16290

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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3,346,077 + ABIE41_RS16280 0.48 -0.3
3,346,160 + ABIE41_RS16280 0.53 -0.0
3,346,161 - ABIE41_RS16280 0.53 +0.1
3,346,161 - ABIE41_RS16280 0.53 -1.0
3,346,376 + ABIE41_RS16280 0.65 +0.3
3,346,634 + ABIE41_RS16280 0.80 +0.0
3,346,635 - ABIE41_RS16280 0.80 -0.7
3,346,635 - ABIE41_RS16280 0.80 +0.8
3,346,635 - ABIE41_RS16280 0.80 +2.4
3,346,682 + ABIE41_RS16280 0.82 +0.2
3,346,682 + ABIE41_RS16280 0.82 -0.0
3,346,682 + ABIE41_RS16280 0.82 -0.3
3,346,682 + ABIE41_RS16280 0.82 -0.5
3,346,683 - ABIE41_RS16280 0.82 -0.4
3,346,683 - ABIE41_RS16280 0.82 -0.3
3,346,683 - ABIE41_RS16280 0.82 +0.8
3,346,683 - ABIE41_RS16280 0.82 -0.5
3,346,683 - ABIE41_RS16280 0.82 +0.1
3,346,709 + ABIE41_RS16280 0.84 -0.4
3,346,709 + ABIE41_RS16280 0.84 -2.1
3,346,791 - ABIE41_RS16280 0.88 +0.4
3,346,817 + ABIE41_RS16280 0.90 -0.5
3,346,817 + ABIE41_RS16280 0.90 +2.4
3,346,817 + ABIE41_RS16280 0.90 +0.7
3,346,817 + ABIE41_RS16280 0.90 +0.8
3,346,818 - ABIE41_RS16280 0.90 -2.4
3,346,818 - ABIE41_RS16280 0.90 +0.1
3,347,080 - +0.3
3,347,137 + ABIE41_RS16285 0.14 -1.3
3,347,137 + ABIE41_RS16285 0.14 +0.4
3,347,137 + ABIE41_RS16285 0.14 -0.2
3,347,138 - ABIE41_RS16285 0.14 -0.4
3,347,365 + ABIE41_RS16285 0.37 -0.1
3,347,365 + ABIE41_RS16285 0.37 -0.9
3,347,365 + ABIE41_RS16285 0.37 -0.1
3,347,365 + ABIE41_RS16285 0.37 -0.0
3,347,365 + ABIE41_RS16285 0.37 +0.3
3,347,365 + ABIE41_RS16285 0.37 -0.0
3,347,366 - ABIE41_RS16285 0.37 +1.6
3,347,366 - ABIE41_RS16285 0.37 +0.1
3,347,366 - ABIE41_RS16285 0.37 -0.4
3,347,464 + ABIE41_RS16285 0.47 +0.1
3,347,464 + ABIE41_RS16285 0.47 -0.7
3,347,465 - ABIE41_RS16285 0.47 +0.0
3,347,516 + ABIE41_RS16285 0.52 -0.2
3,347,517 - ABIE41_RS16285 0.52 -0.7
3,347,517 - ABIE41_RS16285 0.52 +0.6
3,347,581 + ABIE41_RS16285 0.58 +0.1
3,347,582 - ABIE41_RS16285 0.58 +0.3
3,347,779 + ABIE41_RS16285 0.78 -2.4
3,347,780 - ABIE41_RS16285 0.78 -1.2
3,347,780 - ABIE41_RS16285 0.78 +0.1
3,348,217 + ABIE41_RS16290 0.13 -0.5
3,348,557 - ABIE41_RS16290 0.45 -0.6
3,348,725 - ABIE41_RS16290 0.61 -0.2
3,348,742 + ABIE41_RS16290 0.62 -0.6
3,348,742 + ABIE41_RS16290 0.62 -0.8
3,348,743 - ABIE41_RS16290 0.62 -0.9
3,348,743 - ABIE41_RS16290 0.62 -1.3
3,348,743 - ABIE41_RS16290 0.62 -2.5
3,348,869 + ABIE41_RS16290 0.74 +1.4
3,348,869 + ABIE41_RS16290 0.74 +0.4
3,348,870 - ABIE41_RS16290 0.74 +0.2
3,348,870 - ABIE41_RS16290 0.74 +1.7
3,348,870 - ABIE41_RS16290 0.74 -0.6
3,348,871 + ABIE41_RS16290 0.74 -0.2
3,348,872 - ABIE41_RS16290 0.74 +0.1
3,348,872 - ABIE41_RS16290 0.74 -0.0
3,348,872 - ABIE41_RS16290 0.74 -1.5
3,348,872 - ABIE41_RS16290 0.74 -0.5
3,348,872 - ABIE41_RS16290 0.74 -0.0
3,348,970 + ABIE41_RS16290 0.84 -0.2
3,348,970 + ABIE41_RS16290 0.84 -0.6
3,348,970 + ABIE41_RS16290 0.84 +0.1
3,348,971 - ABIE41_RS16290 0.84 -0.2
3,348,971 - ABIE41_RS16290 0.84 +0.0
3,348,971 - ABIE41_RS16290 0.84 -0.2
3,348,971 - ABIE41_RS16290 0.84 +0.2
3,348,971 - ABIE41_RS16290 0.84 -0.9

Or see this region's nucleotide sequence