Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16280

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16275 and ABIE41_RS16280 are separated by 26 nucleotidesABIE41_RS16280 and ABIE41_RS16285 overlap by 4 nucleotides ABIE41_RS16275: ABIE41_RS16275 - AMP-binding protein, at 3,343,673 to 3,345,202 _RS16275 ABIE41_RS16280: ABIE41_RS16280 - ABC transporter permease subunit, at 3,345,229 to 3,346,995 _RS16280 ABIE41_RS16285: ABIE41_RS16285 - ABC transporter ATP-binding protein, at 3,346,992 to 3,348,005 _RS16285 Position (kb) 3345 3346 3347Strain fitness (log2 ratio) -2 -1 0 1 2at 3344.308 kb on - strand, within ABIE41_RS16275at 3344.463 kb on - strand, within ABIE41_RS16275at 3344.465 kb on - strand, within ABIE41_RS16275at 3344.586 kb on + strand, within ABIE41_RS16275at 3344.586 kb on + strand, within ABIE41_RS16275at 3344.586 kb on + strand, within ABIE41_RS16275at 3344.587 kb on - strand, within ABIE41_RS16275at 3344.587 kb on - strand, within ABIE41_RS16275at 3344.718 kb on + strand, within ABIE41_RS16275at 3344.718 kb on + strand, within ABIE41_RS16275at 3344.718 kb on + strand, within ABIE41_RS16275at 3344.718 kb on + strand, within ABIE41_RS16275at 3344.718 kb on + strand, within ABIE41_RS16275at 3344.718 kb on + strand, within ABIE41_RS16275at 3344.718 kb on + strand, within ABIE41_RS16275at 3344.719 kb on - strand, within ABIE41_RS16275at 3344.719 kb on - strand, within ABIE41_RS16275at 3344.719 kb on - strand, within ABIE41_RS16275at 3344.719 kb on - strand, within ABIE41_RS16275at 3344.719 kb on - strand, within ABIE41_RS16275at 3344.719 kb on - strand, within ABIE41_RS16275at 3345.099 kb on + strandat 3345.120 kb on + strandat 3345.120 kb on + strandat 3345.121 kb on - strandat 3345.121 kb on - strandat 3345.548 kb on + strand, within ABIE41_RS16280at 3345.549 kb on - strand, within ABIE41_RS16280at 3345.549 kb on - strand, within ABIE41_RS16280at 3345.599 kb on - strand, within ABIE41_RS16280at 3345.660 kb on - strand, within ABIE41_RS16280at 3345.860 kb on + strand, within ABIE41_RS16280at 3345.861 kb on - strand, within ABIE41_RS16280at 3345.861 kb on - strand, within ABIE41_RS16280at 3345.861 kb on - strand, within ABIE41_RS16280at 3345.861 kb on - strand, within ABIE41_RS16280at 3346.077 kb on + strand, within ABIE41_RS16280at 3346.160 kb on + strand, within ABIE41_RS16280at 3346.161 kb on - strand, within ABIE41_RS16280at 3346.161 kb on - strand, within ABIE41_RS16280at 3346.376 kb on + strand, within ABIE41_RS16280at 3346.634 kb on + strand, within ABIE41_RS16280at 3346.635 kb on - strand, within ABIE41_RS16280at 3346.635 kb on - strand, within ABIE41_RS16280at 3346.635 kb on - strand, within ABIE41_RS16280at 3346.682 kb on + strand, within ABIE41_RS16280at 3346.682 kb on + strand, within ABIE41_RS16280at 3346.682 kb on + strand, within ABIE41_RS16280at 3346.682 kb on + strand, within ABIE41_RS16280at 3346.683 kb on - strand, within ABIE41_RS16280at 3346.683 kb on - strand, within ABIE41_RS16280at 3346.683 kb on - strand, within ABIE41_RS16280at 3346.683 kb on - strand, within ABIE41_RS16280at 3346.683 kb on - strand, within ABIE41_RS16280at 3346.709 kb on + strand, within ABIE41_RS16280at 3346.709 kb on + strand, within ABIE41_RS16280at 3346.791 kb on - strand, within ABIE41_RS16280at 3346.817 kb on + strand, within ABIE41_RS16280at 3346.817 kb on + strand, within ABIE41_RS16280at 3346.817 kb on + strand, within ABIE41_RS16280at 3346.817 kb on + strand, within ABIE41_RS16280at 3346.818 kb on - strand, within ABIE41_RS16280at 3346.818 kb on - strand, within ABIE41_RS16280at 3347.080 kb on - strandat 3347.137 kb on + strand, within ABIE41_RS16285at 3347.137 kb on + strand, within ABIE41_RS16285at 3347.137 kb on + strand, within ABIE41_RS16285at 3347.138 kb on - strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.365 kb on + strand, within ABIE41_RS16285at 3347.366 kb on - strand, within ABIE41_RS16285at 3347.366 kb on - strand, within ABIE41_RS16285at 3347.366 kb on - strand, within ABIE41_RS16285at 3347.464 kb on + strand, within ABIE41_RS16285at 3347.464 kb on + strand, within ABIE41_RS16285at 3347.465 kb on - strand, within ABIE41_RS16285at 3347.516 kb on + strand, within ABIE41_RS16285at 3347.517 kb on - strand, within ABIE41_RS16285at 3347.517 kb on - strand, within ABIE41_RS16285at 3347.581 kb on + strand, within ABIE41_RS16285at 3347.582 kb on - strand, within ABIE41_RS16285at 3347.779 kb on + strand, within ABIE41_RS16285at 3347.780 kb on - strand, within ABIE41_RS16285at 3347.780 kb on - strand, within ABIE41_RS16285

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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3,344,308 - ABIE41_RS16275 0.42 +1.0
3,344,463 - ABIE41_RS16275 0.52 +0.9
3,344,465 - ABIE41_RS16275 0.52 +0.3
3,344,586 + ABIE41_RS16275 0.60 -0.2
3,344,586 + ABIE41_RS16275 0.60 -1.4
3,344,586 + ABIE41_RS16275 0.60 -0.5
3,344,587 - ABIE41_RS16275 0.60 -0.5
3,344,587 - ABIE41_RS16275 0.60 +0.4
3,344,718 + ABIE41_RS16275 0.68 +0.3
3,344,718 + ABIE41_RS16275 0.68 -0.4
3,344,718 + ABIE41_RS16275 0.68 -1.0
3,344,718 + ABIE41_RS16275 0.68 +0.6
3,344,718 + ABIE41_RS16275 0.68 +1.8
3,344,718 + ABIE41_RS16275 0.68 +0.1
3,344,718 + ABIE41_RS16275 0.68 +1.5
3,344,719 - ABIE41_RS16275 0.68 +0.0
3,344,719 - ABIE41_RS16275 0.68 +0.9
3,344,719 - ABIE41_RS16275 0.68 -0.0
3,344,719 - ABIE41_RS16275 0.68 +0.8
3,344,719 - ABIE41_RS16275 0.68 +0.2
3,344,719 - ABIE41_RS16275 0.68 +0.1
3,345,099 + +0.3
3,345,120 + -0.4
3,345,120 + +0.4
3,345,121 - +0.1
3,345,121 - +0.0
3,345,548 + ABIE41_RS16280 0.18 -1.2
3,345,549 - ABIE41_RS16280 0.18 +0.3
3,345,549 - ABIE41_RS16280 0.18 -0.5
3,345,599 - ABIE41_RS16280 0.21 -1.7
3,345,660 - ABIE41_RS16280 0.24 +0.1
3,345,860 + ABIE41_RS16280 0.36 -0.4
3,345,861 - ABIE41_RS16280 0.36 -2.4
3,345,861 - ABIE41_RS16280 0.36 -0.5
3,345,861 - ABIE41_RS16280 0.36 +1.3
3,345,861 - ABIE41_RS16280 0.36 -0.1
3,346,077 + ABIE41_RS16280 0.48 -0.3
3,346,160 + ABIE41_RS16280 0.53 -0.0
3,346,161 - ABIE41_RS16280 0.53 +0.1
3,346,161 - ABIE41_RS16280 0.53 -1.0
3,346,376 + ABIE41_RS16280 0.65 +0.3
3,346,634 + ABIE41_RS16280 0.80 +0.0
3,346,635 - ABIE41_RS16280 0.80 -0.7
3,346,635 - ABIE41_RS16280 0.80 +0.8
3,346,635 - ABIE41_RS16280 0.80 +2.4
3,346,682 + ABIE41_RS16280 0.82 +0.2
3,346,682 + ABIE41_RS16280 0.82 -0.0
3,346,682 + ABIE41_RS16280 0.82 -0.3
3,346,682 + ABIE41_RS16280 0.82 -0.5
3,346,683 - ABIE41_RS16280 0.82 -0.4
3,346,683 - ABIE41_RS16280 0.82 -0.3
3,346,683 - ABIE41_RS16280 0.82 +0.8
3,346,683 - ABIE41_RS16280 0.82 -0.5
3,346,683 - ABIE41_RS16280 0.82 +0.1
3,346,709 + ABIE41_RS16280 0.84 -0.4
3,346,709 + ABIE41_RS16280 0.84 -2.1
3,346,791 - ABIE41_RS16280 0.88 +0.4
3,346,817 + ABIE41_RS16280 0.90 -0.5
3,346,817 + ABIE41_RS16280 0.90 +2.4
3,346,817 + ABIE41_RS16280 0.90 +0.7
3,346,817 + ABIE41_RS16280 0.90 +0.8
3,346,818 - ABIE41_RS16280 0.90 -2.4
3,346,818 - ABIE41_RS16280 0.90 +0.1
3,347,080 - +0.3
3,347,137 + ABIE41_RS16285 0.14 -1.3
3,347,137 + ABIE41_RS16285 0.14 +0.4
3,347,137 + ABIE41_RS16285 0.14 -0.2
3,347,138 - ABIE41_RS16285 0.14 -0.4
3,347,365 + ABIE41_RS16285 0.37 -0.1
3,347,365 + ABIE41_RS16285 0.37 -0.9
3,347,365 + ABIE41_RS16285 0.37 -0.1
3,347,365 + ABIE41_RS16285 0.37 -0.0
3,347,365 + ABIE41_RS16285 0.37 +0.3
3,347,365 + ABIE41_RS16285 0.37 -0.0
3,347,366 - ABIE41_RS16285 0.37 +1.6
3,347,366 - ABIE41_RS16285 0.37 +0.1
3,347,366 - ABIE41_RS16285 0.37 -0.4
3,347,464 + ABIE41_RS16285 0.47 +0.1
3,347,464 + ABIE41_RS16285 0.47 -0.7
3,347,465 - ABIE41_RS16285 0.47 +0.0
3,347,516 + ABIE41_RS16285 0.52 -0.2
3,347,517 - ABIE41_RS16285 0.52 -0.7
3,347,517 - ABIE41_RS16285 0.52 +0.6
3,347,581 + ABIE41_RS16285 0.58 +0.1
3,347,582 - ABIE41_RS16285 0.58 +0.3
3,347,779 + ABIE41_RS16285 0.78 -2.4
3,347,780 - ABIE41_RS16285 0.78 -1.2
3,347,780 - ABIE41_RS16285 0.78 +0.1

Or see this region's nucleotide sequence