Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16270 and ABIE41_RS16275 are separated by 1 nucleotides ABIE41_RS16275 and ABIE41_RS16280 are separated by 26 nucleotides
ABIE41_RS16270: ABIE41_RS16270 - hypothetical protein, at 3,342,589 to 3,343,671
_RS16270
ABIE41_RS16275: ABIE41_RS16275 - AMP-binding protein, at 3,343,673 to 3,345,202
_RS16275
ABIE41_RS16280: ABIE41_RS16280 - ABC transporter permease subunit, at 3,345,229 to 3,346,995
_RS16280
Position (kb) 3343
3344
3345
3346 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3342.949 kb on + strand, within ABIE41_RS16270 at 3342.950 kb on - strand, within ABIE41_RS16270 at 3343.788 kb on + strand at 3343.788 kb on + strand at 3343.788 kb on + strand at 3343.788 kb on + strand at 3343.789 kb on - strand at 3343.789 kb on - strand at 3343.789 kb on - strand at 3344.028 kb on - strand, within ABIE41_RS16275 at 3344.124 kb on + strand, within ABIE41_RS16275 at 3344.124 kb on + strand, within ABIE41_RS16275 at 3344.308 kb on - strand, within ABIE41_RS16275 at 3344.463 kb on - strand, within ABIE41_RS16275 at 3344.465 kb on - strand, within ABIE41_RS16275 at 3344.586 kb on + strand, within ABIE41_RS16275 at 3344.586 kb on + strand, within ABIE41_RS16275 at 3344.586 kb on + strand, within ABIE41_RS16275 at 3344.587 kb on - strand, within ABIE41_RS16275 at 3344.587 kb on - strand, within ABIE41_RS16275 at 3344.718 kb on + strand, within ABIE41_RS16275 at 3344.718 kb on + strand, within ABIE41_RS16275 at 3344.718 kb on + strand, within ABIE41_RS16275 at 3344.718 kb on + strand, within ABIE41_RS16275 at 3344.718 kb on + strand, within ABIE41_RS16275 at 3344.718 kb on + strand, within ABIE41_RS16275 at 3344.718 kb on + strand, within ABIE41_RS16275 at 3344.719 kb on - strand, within ABIE41_RS16275 at 3344.719 kb on - strand, within ABIE41_RS16275 at 3344.719 kb on - strand, within ABIE41_RS16275 at 3344.719 kb on - strand, within ABIE41_RS16275 at 3344.719 kb on - strand, within ABIE41_RS16275 at 3344.719 kb on - strand, within ABIE41_RS16275 at 3345.099 kb on + strand at 3345.120 kb on + strand at 3345.120 kb on + strand at 3345.121 kb on - strand at 3345.121 kb on - strand at 3345.548 kb on + strand, within ABIE41_RS16280 at 3345.549 kb on - strand, within ABIE41_RS16280 at 3345.549 kb on - strand, within ABIE41_RS16280 at 3345.599 kb on - strand, within ABIE41_RS16280 at 3345.660 kb on - strand, within ABIE41_RS16280 at 3345.860 kb on + strand, within ABIE41_RS16280 at 3345.861 kb on - strand, within ABIE41_RS16280 at 3345.861 kb on - strand, within ABIE41_RS16280 at 3345.861 kb on - strand, within ABIE41_RS16280 at 3345.861 kb on - strand, within ABIE41_RS16280 at 3346.077 kb on + strand, within ABIE41_RS16280 at 3346.160 kb on + strand, within ABIE41_RS16280 at 3346.161 kb on - strand, within ABIE41_RS16280 at 3346.161 kb on - strand, within ABIE41_RS16280
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 3,342,949 + ABIE41_RS16270 0.33 -1.1 3,342,950 - ABIE41_RS16270 0.33 -0.2 3,343,788 + +0.3 3,343,788 + +2.2 3,343,788 + -1.7 3,343,788 + +0.1 3,343,789 - +2.0 3,343,789 - -0.4 3,343,789 - +0.5 3,344,028 - ABIE41_RS16275 0.23 +2.6 3,344,124 + ABIE41_RS16275 0.29 +1.1 3,344,124 + ABIE41_RS16275 0.29 +0.1 3,344,308 - ABIE41_RS16275 0.42 +1.0 3,344,463 - ABIE41_RS16275 0.52 +0.9 3,344,465 - ABIE41_RS16275 0.52 +0.3 3,344,586 + ABIE41_RS16275 0.60 -0.2 3,344,586 + ABIE41_RS16275 0.60 -1.4 3,344,586 + ABIE41_RS16275 0.60 -0.5 3,344,587 - ABIE41_RS16275 0.60 -0.5 3,344,587 - ABIE41_RS16275 0.60 +0.4 3,344,718 + ABIE41_RS16275 0.68 +0.3 3,344,718 + ABIE41_RS16275 0.68 -0.4 3,344,718 + ABIE41_RS16275 0.68 -1.0 3,344,718 + ABIE41_RS16275 0.68 +0.6 3,344,718 + ABIE41_RS16275 0.68 +1.8 3,344,718 + ABIE41_RS16275 0.68 +0.1 3,344,718 + ABIE41_RS16275 0.68 +1.5 3,344,719 - ABIE41_RS16275 0.68 +0.0 3,344,719 - ABIE41_RS16275 0.68 +0.9 3,344,719 - ABIE41_RS16275 0.68 -0.0 3,344,719 - ABIE41_RS16275 0.68 +0.8 3,344,719 - ABIE41_RS16275 0.68 +0.2 3,344,719 - ABIE41_RS16275 0.68 +0.1 3,345,099 + +0.3 3,345,120 + -0.4 3,345,120 + +0.4 3,345,121 - +0.1 3,345,121 - +0.0 3,345,548 + ABIE41_RS16280 0.18 -1.2 3,345,549 - ABIE41_RS16280 0.18 +0.3 3,345,549 - ABIE41_RS16280 0.18 -0.5 3,345,599 - ABIE41_RS16280 0.21 -1.7 3,345,660 - ABIE41_RS16280 0.24 +0.1 3,345,860 + ABIE41_RS16280 0.36 -0.4 3,345,861 - ABIE41_RS16280 0.36 -2.4 3,345,861 - ABIE41_RS16280 0.36 -0.5 3,345,861 - ABIE41_RS16280 0.36 +1.3 3,345,861 - ABIE41_RS16280 0.36 -0.1 3,346,077 + ABIE41_RS16280 0.48 -0.3 3,346,160 + ABIE41_RS16280 0.53 -0.0 3,346,161 - ABIE41_RS16280 0.53 +0.1 3,346,161 - ABIE41_RS16280 0.53 -1.0
Or see this region's nucleotide sequence