Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS16255 and ABIE41_RS16260 are separated by 277 nucleotides ABIE41_RS16260 and ABIE41_RS16265 are separated by 30 nucleotides ABIE41_RS16265 and ABIE41_RS16270 are separated by 254 nucleotides
ABIE41_RS16255: ABIE41_RS16255 - alpha/beta fold hydrolase, at 3,340,612 to 3,341,436
_RS16255
ABIE41_RS16260: ABIE41_RS16260 - hypothetical protein, at 3,341,714 to 3,341,941
_RS16260
ABIE41_RS16265: ABIE41_RS16265 - hypothetical protein, at 3,341,972 to 3,342,334
_RS16265
ABIE41_RS16270: ABIE41_RS16270 - hypothetical protein, at 3,342,589 to 3,343,671
_RS16270
Position (kb)
3341
3342
3343 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3341.081 kb on + strand, within ABIE41_RS16255 at 3341.081 kb on + strand, within ABIE41_RS16255 at 3341.081 kb on + strand, within ABIE41_RS16255 at 3341.081 kb on + strand, within ABIE41_RS16255 at 3341.081 kb on + strand, within ABIE41_RS16255 at 3341.709 kb on - strand at 3341.709 kb on - strand at 3341.837 kb on - strand, within ABIE41_RS16260 at 3341.903 kb on - strand, within ABIE41_RS16260 at 3341.903 kb on - strand, within ABIE41_RS16260 at 3341.903 kb on - strand, within ABIE41_RS16260 at 3341.940 kb on - strand at 3342.062 kb on + strand, within ABIE41_RS16265 at 3342.062 kb on + strand, within ABIE41_RS16265 at 3342.062 kb on + strand, within ABIE41_RS16265 at 3342.064 kb on + strand, within ABIE41_RS16265 at 3342.064 kb on + strand, within ABIE41_RS16265 at 3342.065 kb on - strand, within ABIE41_RS16265 at 3342.065 kb on - strand, within ABIE41_RS16265 at 3342.080 kb on + strand, within ABIE41_RS16265 at 3342.113 kb on + strand, within ABIE41_RS16265 at 3342.113 kb on + strand, within ABIE41_RS16265 at 3342.264 kb on - strand, within ABIE41_RS16265 at 3342.332 kb on + strand at 3342.332 kb on + strand at 3342.333 kb on - strand at 3342.438 kb on - strand at 3342.449 kb on + strand at 3342.449 kb on + strand at 3342.632 kb on + strand at 3342.632 kb on + strand at 3342.633 kb on - strand at 3342.633 kb on - strand at 3342.633 kb on - strand at 3342.633 kb on - strand at 3342.646 kb on + strand at 3342.949 kb on + strand, within ABIE41_RS16270 at 3342.950 kb on - strand, within ABIE41_RS16270
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 3,341,081 + ABIE41_RS16255 0.57 +1.3 3,341,081 + ABIE41_RS16255 0.57 -0.9 3,341,081 + ABIE41_RS16255 0.57 +1.8 3,341,081 + ABIE41_RS16255 0.57 +0.7 3,341,081 + ABIE41_RS16255 0.57 -0.2 3,341,709 - +0.4 3,341,709 - -0.1 3,341,837 - ABIE41_RS16260 0.54 -0.6 3,341,903 - ABIE41_RS16260 0.83 +1.1 3,341,903 - ABIE41_RS16260 0.83 +0.4 3,341,903 - ABIE41_RS16260 0.83 -0.3 3,341,940 - -0.2 3,342,062 + ABIE41_RS16265 0.25 +0.4 3,342,062 + ABIE41_RS16265 0.25 +0.7 3,342,062 + ABIE41_RS16265 0.25 -0.3 3,342,064 + ABIE41_RS16265 0.25 -1.5 3,342,064 + ABIE41_RS16265 0.25 +1.8 3,342,065 - ABIE41_RS16265 0.26 -0.4 3,342,065 - ABIE41_RS16265 0.26 -2.2 3,342,080 + ABIE41_RS16265 0.30 -3.4 3,342,113 + ABIE41_RS16265 0.39 -0.4 3,342,113 + ABIE41_RS16265 0.39 +1.0 3,342,264 - ABIE41_RS16265 0.80 -0.8 3,342,332 + +1.8 3,342,332 + +0.1 3,342,333 - -0.4 3,342,438 - +0.2 3,342,449 + -0.2 3,342,449 + -0.4 3,342,632 + +0.0 3,342,632 + -0.1 3,342,633 - -0.6 3,342,633 - -1.6 3,342,633 - +0.9 3,342,633 - -0.2 3,342,646 + +0.1 3,342,949 + ABIE41_RS16270 0.33 -1.1 3,342,950 - ABIE41_RS16270 0.33 -0.2
Or see this region's nucleotide sequence