Strain Fitness in Bosea sp. OAE506 around ABIE41_RS15695

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS15690 and ABIE41_RS15695 overlap by 14 nucleotidesABIE41_RS15695 and ABIE41_RS15700 are separated by 80 nucleotidesABIE41_RS15700 and ABIE41_RS15705 are separated by 22 nucleotides ABIE41_RS15690: ABIE41_RS15690 - dihydroxy-acid dehydratase, at 3,213,850 to 3,215,580 _RS15690 ABIE41_RS15695: ABIE41_RS15695 - tetratricopeptide repeat protein, at 3,215,567 to 3,216,514 _RS15695 ABIE41_RS15700: ABIE41_RS15700 - hypothetical protein, at 3,216,595 to 3,216,963 _RS15700 ABIE41_RS15705: ABIE41_RS15705 - exodeoxyribonuclease III, at 3,216,986 to 3,217,771 _RS15705 Position (kb) 3215 3216 3217Strain fitness (log2 ratio) -1 0 1 2at 3216.591 kb on + strandat 3216.591 kb on + strandat 3216.591 kb on + strandat 3216.742 kb on + strand, within ABIE41_RS15700at 3216.812 kb on - strand, within ABIE41_RS15700at 3217.119 kb on - strand, within ABIE41_RS15705at 3217.152 kb on + strand, within ABIE41_RS15705at 3217.167 kb on + strand, within ABIE41_RS15705at 3217.167 kb on + strand, within ABIE41_RS15705at 3217.168 kb on - strand, within ABIE41_RS15705at 3217.320 kb on + strand, within ABIE41_RS15705at 3217.321 kb on - strand, within ABIE41_RS15705at 3217.410 kb on + strand, within ABIE41_RS15705at 3217.410 kb on + strand, within ABIE41_RS15705at 3217.411 kb on - strand, within ABIE41_RS15705at 3217.446 kb on + strand, within ABIE41_RS15705

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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3,216,591 + +0.7
3,216,591 + +2.3
3,216,591 + +0.6
3,216,742 + ABIE41_RS15700 0.40 +0.1
3,216,812 - ABIE41_RS15700 0.59 +1.3
3,217,119 - ABIE41_RS15705 0.17 -1.6
3,217,152 + ABIE41_RS15705 0.21 -1.5
3,217,167 + ABIE41_RS15705 0.23 -0.9
3,217,167 + ABIE41_RS15705 0.23 +0.5
3,217,168 - ABIE41_RS15705 0.23 -0.2
3,217,320 + ABIE41_RS15705 0.42 -0.6
3,217,321 - ABIE41_RS15705 0.43 +0.3
3,217,410 + ABIE41_RS15705 0.54 -0.0
3,217,410 + ABIE41_RS15705 0.54 -0.1
3,217,411 - ABIE41_RS15705 0.54 -1.2
3,217,446 + ABIE41_RS15705 0.59 -0.1

Or see this region's nucleotide sequence