Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15675 and ABIE41_RS15680 are separated by 45 nucleotides ABIE41_RS15680 and ABIE41_RS15685 are separated by 155 nucleotides
ABIE41_RS15675: ABIE41_RS15675 - valine--tRNA ligase, at 3,208,322 to 3,211,141
_RS15675
ABIE41_RS15680: ABIE41_RS15680 - alkaline phosphatase D family protein, at 3,211,187 to 3,212,818
_RS15680
ABIE41_RS15685: ABIE41_RS15685 - VTT domain-containing protein, at 3,212,974 to 3,213,555
_RS15685
Position (kb)
3211
3212
3213 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3211.139 kb on + strand at 3211.518 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.602 kb on - strand, within ABIE41_RS15680 at 3211.602 kb on - strand, within ABIE41_RS15680 at 3211.602 kb on - strand, within ABIE41_RS15680 at 3211.602 kb on - strand, within ABIE41_RS15680 at 3211.607 kb on + strand, within ABIE41_RS15680 at 3211.607 kb on + strand, within ABIE41_RS15680 at 3211.608 kb on - strand, within ABIE41_RS15680 at 3211.718 kb on + strand, within ABIE41_RS15680 at 3211.719 kb on - strand, within ABIE41_RS15680 at 3211.778 kb on + strand, within ABIE41_RS15680 at 3211.779 kb on - strand, within ABIE41_RS15680 at 3211.793 kb on + strand, within ABIE41_RS15680 at 3211.793 kb on + strand, within ABIE41_RS15680 at 3211.799 kb on + strand, within ABIE41_RS15680 at 3211.799 kb on + strand, within ABIE41_RS15680 at 3211.877 kb on + strand, within ABIE41_RS15680 at 3211.914 kb on - strand, within ABIE41_RS15680 at 3211.914 kb on - strand, within ABIE41_RS15680 at 3212.136 kb on - strand, within ABIE41_RS15680 at 3212.904 kb on - strand at 3212.904 kb on - strand at 3212.990 kb on - strand at 3213.136 kb on + strand, within ABIE41_RS15685 at 3213.184 kb on + strand, within ABIE41_RS15685 at 3213.205 kb on + strand, within ABIE41_RS15685 at 3213.238 kb on + strand, within ABIE41_RS15685 at 3213.238 kb on + strand, within ABIE41_RS15685 at 3213.238 kb on + strand, within ABIE41_RS15685 at 3213.239 kb on - strand, within ABIE41_RS15685 at 3213.239 kb on - strand, within ABIE41_RS15685 at 3213.239 kb on - strand, within ABIE41_RS15685 at 3213.448 kb on + strand, within ABIE41_RS15685 at 3213.448 kb on + strand, within ABIE41_RS15685 at 3213.449 kb on - strand, within ABIE41_RS15685 at 3213.449 kb on - strand, within ABIE41_RS15685 at 3213.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 3,211,139 + -0.5 3,211,518 + ABIE41_RS15680 0.20 -0.6 3,211,601 + ABIE41_RS15680 0.25 -0.1 3,211,601 + ABIE41_RS15680 0.25 -0.4 3,211,601 + ABIE41_RS15680 0.25 +0.5 3,211,601 + ABIE41_RS15680 0.25 -0.4 3,211,601 + ABIE41_RS15680 0.25 -0.6 3,211,601 + ABIE41_RS15680 0.25 -1.3 3,211,601 + ABIE41_RS15680 0.25 +0.5 3,211,601 + ABIE41_RS15680 0.25 +1.8 3,211,602 - ABIE41_RS15680 0.25 +0.4 3,211,602 - ABIE41_RS15680 0.25 +0.3 3,211,602 - ABIE41_RS15680 0.25 +1.3 3,211,602 - ABIE41_RS15680 0.25 +0.1 3,211,607 + ABIE41_RS15680 0.26 +1.9 3,211,607 + ABIE41_RS15680 0.26 +1.4 3,211,608 - ABIE41_RS15680 0.26 -0.3 3,211,718 + ABIE41_RS15680 0.33 -0.5 3,211,719 - ABIE41_RS15680 0.33 +0.2 3,211,778 + ABIE41_RS15680 0.36 +0.2 3,211,779 - ABIE41_RS15680 0.36 +1.7 3,211,793 + ABIE41_RS15680 0.37 -0.4 3,211,793 + ABIE41_RS15680 0.37 +1.1 3,211,799 + ABIE41_RS15680 0.38 +0.7 3,211,799 + ABIE41_RS15680 0.38 -0.6 3,211,877 + ABIE41_RS15680 0.42 -0.1 3,211,914 - ABIE41_RS15680 0.45 +1.0 3,211,914 - ABIE41_RS15680 0.45 +0.5 3,212,136 - ABIE41_RS15680 0.58 +0.8 3,212,904 - -0.1 3,212,904 - +0.3 3,212,990 - -2.7 3,213,136 + ABIE41_RS15685 0.28 +0.3 3,213,184 + ABIE41_RS15685 0.36 -0.5 3,213,205 + ABIE41_RS15685 0.40 -0.4 3,213,238 + ABIE41_RS15685 0.45 -3.4 3,213,238 + ABIE41_RS15685 0.45 -0.6 3,213,238 + ABIE41_RS15685 0.45 +0.4 3,213,239 - ABIE41_RS15685 0.46 -0.8 3,213,239 - ABIE41_RS15685 0.46 +0.3 3,213,239 - ABIE41_RS15685 0.46 -0.1 3,213,448 + ABIE41_RS15685 0.81 -1.6 3,213,448 + ABIE41_RS15685 0.81 -1.6 3,213,449 - ABIE41_RS15685 0.82 -0.2 3,213,449 - ABIE41_RS15685 0.82 +0.9 3,213,715 + +0.2
Or see this region's nucleotide sequence