Strain Fitness in Bosea sp. OAE506 around ABIE41_RS15680

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS15675 and ABIE41_RS15680 are separated by 45 nucleotidesABIE41_RS15680 and ABIE41_RS15685 are separated by 155 nucleotides ABIE41_RS15675: ABIE41_RS15675 - valine--tRNA ligase, at 3,208,322 to 3,211,141 _RS15675 ABIE41_RS15680: ABIE41_RS15680 - alkaline phosphatase D family protein, at 3,211,187 to 3,212,818 _RS15680 ABIE41_RS15685: ABIE41_RS15685 - VTT domain-containing protein, at 3,212,974 to 3,213,555 _RS15685 Position (kb) 3211 3212 3213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3211.139 kb on + strandat 3211.518 kb on + strand, within ABIE41_RS15680at 3211.601 kb on + strand, within ABIE41_RS15680at 3211.601 kb on + strand, within ABIE41_RS15680at 3211.601 kb on + strand, within ABIE41_RS15680at 3211.601 kb on + strand, within ABIE41_RS15680at 3211.601 kb on + strand, within ABIE41_RS15680at 3211.601 kb on + strand, within ABIE41_RS15680at 3211.601 kb on + strand, within ABIE41_RS15680at 3211.601 kb on + strand, within ABIE41_RS15680at 3211.602 kb on - strand, within ABIE41_RS15680at 3211.602 kb on - strand, within ABIE41_RS15680at 3211.602 kb on - strand, within ABIE41_RS15680at 3211.602 kb on - strand, within ABIE41_RS15680at 3211.607 kb on + strand, within ABIE41_RS15680at 3211.607 kb on + strand, within ABIE41_RS15680at 3211.608 kb on - strand, within ABIE41_RS15680at 3211.718 kb on + strand, within ABIE41_RS15680at 3211.719 kb on - strand, within ABIE41_RS15680at 3211.778 kb on + strand, within ABIE41_RS15680at 3211.779 kb on - strand, within ABIE41_RS15680at 3211.793 kb on + strand, within ABIE41_RS15680at 3211.793 kb on + strand, within ABIE41_RS15680at 3211.799 kb on + strand, within ABIE41_RS15680at 3211.799 kb on + strand, within ABIE41_RS15680at 3211.877 kb on + strand, within ABIE41_RS15680at 3211.914 kb on - strand, within ABIE41_RS15680at 3211.914 kb on - strand, within ABIE41_RS15680at 3212.136 kb on - strand, within ABIE41_RS15680at 3212.904 kb on - strandat 3212.904 kb on - strandat 3212.990 kb on - strandat 3213.136 kb on + strand, within ABIE41_RS15685at 3213.184 kb on + strand, within ABIE41_RS15685at 3213.205 kb on + strand, within ABIE41_RS15685at 3213.238 kb on + strand, within ABIE41_RS15685at 3213.238 kb on + strand, within ABIE41_RS15685at 3213.238 kb on + strand, within ABIE41_RS15685at 3213.239 kb on - strand, within ABIE41_RS15685at 3213.239 kb on - strand, within ABIE41_RS15685at 3213.239 kb on - strand, within ABIE41_RS15685at 3213.448 kb on + strand, within ABIE41_RS15685at 3213.448 kb on + strand, within ABIE41_RS15685at 3213.449 kb on - strand, within ABIE41_RS15685at 3213.449 kb on - strand, within ABIE41_RS15685at 3213.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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3,211,139 + -0.5
3,211,518 + ABIE41_RS15680 0.20 -0.6
3,211,601 + ABIE41_RS15680 0.25 -0.1
3,211,601 + ABIE41_RS15680 0.25 -0.4
3,211,601 + ABIE41_RS15680 0.25 +0.5
3,211,601 + ABIE41_RS15680 0.25 -0.4
3,211,601 + ABIE41_RS15680 0.25 -0.6
3,211,601 + ABIE41_RS15680 0.25 -1.3
3,211,601 + ABIE41_RS15680 0.25 +0.5
3,211,601 + ABIE41_RS15680 0.25 +1.8
3,211,602 - ABIE41_RS15680 0.25 +0.4
3,211,602 - ABIE41_RS15680 0.25 +0.3
3,211,602 - ABIE41_RS15680 0.25 +1.3
3,211,602 - ABIE41_RS15680 0.25 +0.1
3,211,607 + ABIE41_RS15680 0.26 +1.9
3,211,607 + ABIE41_RS15680 0.26 +1.4
3,211,608 - ABIE41_RS15680 0.26 -0.3
3,211,718 + ABIE41_RS15680 0.33 -0.5
3,211,719 - ABIE41_RS15680 0.33 +0.2
3,211,778 + ABIE41_RS15680 0.36 +0.2
3,211,779 - ABIE41_RS15680 0.36 +1.7
3,211,793 + ABIE41_RS15680 0.37 -0.4
3,211,793 + ABIE41_RS15680 0.37 +1.1
3,211,799 + ABIE41_RS15680 0.38 +0.7
3,211,799 + ABIE41_RS15680 0.38 -0.6
3,211,877 + ABIE41_RS15680 0.42 -0.1
3,211,914 - ABIE41_RS15680 0.45 +1.0
3,211,914 - ABIE41_RS15680 0.45 +0.5
3,212,136 - ABIE41_RS15680 0.58 +0.8
3,212,904 - -0.1
3,212,904 - +0.3
3,212,990 - -2.7
3,213,136 + ABIE41_RS15685 0.28 +0.3
3,213,184 + ABIE41_RS15685 0.36 -0.5
3,213,205 + ABIE41_RS15685 0.40 -0.4
3,213,238 + ABIE41_RS15685 0.45 -3.4
3,213,238 + ABIE41_RS15685 0.45 -0.6
3,213,238 + ABIE41_RS15685 0.45 +0.4
3,213,239 - ABIE41_RS15685 0.46 -0.8
3,213,239 - ABIE41_RS15685 0.46 +0.3
3,213,239 - ABIE41_RS15685 0.46 -0.1
3,213,448 + ABIE41_RS15685 0.81 -1.6
3,213,448 + ABIE41_RS15685 0.81 -1.6
3,213,449 - ABIE41_RS15685 0.82 -0.2
3,213,449 - ABIE41_RS15685 0.82 +0.9
3,213,715 + +0.2

Or see this region's nucleotide sequence