Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15660 and ABIE41_RS15665 are separated by 22 nucleotides ABIE41_RS15665 and ABIE41_RS15670 overlap by 1 nucleotides ABIE41_RS15670 and ABIE41_RS15675 are separated by 188 nucleotides ABIE41_RS15675 and ABIE41_RS15680 are separated by 45 nucleotides
ABIE41_RS15660: ABIE41_RS15660 - DUF2497 domain-containing protein, at 3,206,820 to 3,207,395
_RS15660
ABIE41_RS15665: ABIE41_RS15665 - hypothetical protein, at 3,207,418 to 3,207,648
_RS15665
ABIE41_RS15670: ABIE41_RS15670 - pyridoxamine 5'-phosphate oxidase family protein, at 3,207,648 to 3,208,133
_RS15670
ABIE41_RS15675: ABIE41_RS15675 - valine--tRNA ligase, at 3,208,322 to 3,211,141
_RS15675
ABIE41_RS15680: ABIE41_RS15680 - alkaline phosphatase D family protein, at 3,211,187 to 3,212,818
_RS15680
Position (kb)
3208
3209
3210
3211
3212 Strain fitness (log2 ratio)
-1
0
1
2 at 3207.895 kb on + strand, within ABIE41_RS15670 at 3207.895 kb on + strand, within ABIE41_RS15670 at 3207.896 kb on - strand, within ABIE41_RS15670 at 3207.896 kb on - strand, within ABIE41_RS15670 at 3208.205 kb on + strand at 3211.139 kb on + strand at 3211.518 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.601 kb on + strand, within ABIE41_RS15680 at 3211.602 kb on - strand, within ABIE41_RS15680 at 3211.602 kb on - strand, within ABIE41_RS15680 at 3211.602 kb on - strand, within ABIE41_RS15680 at 3211.602 kb on - strand, within ABIE41_RS15680 at 3211.607 kb on + strand, within ABIE41_RS15680 at 3211.607 kb on + strand, within ABIE41_RS15680 at 3211.608 kb on - strand, within ABIE41_RS15680 at 3211.718 kb on + strand, within ABIE41_RS15680 at 3211.719 kb on - strand, within ABIE41_RS15680 at 3211.778 kb on + strand, within ABIE41_RS15680 at 3211.779 kb on - strand, within ABIE41_RS15680 at 3211.793 kb on + strand, within ABIE41_RS15680 at 3211.793 kb on + strand, within ABIE41_RS15680 at 3211.799 kb on + strand, within ABIE41_RS15680 at 3211.799 kb on + strand, within ABIE41_RS15680 at 3211.877 kb on + strand, within ABIE41_RS15680 at 3211.914 kb on - strand, within ABIE41_RS15680 at 3211.914 kb on - strand, within ABIE41_RS15680 at 3212.136 kb on - strand, within ABIE41_RS15680
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 3,207,895 + ABIE41_RS15670 0.51 +0.5 3,207,895 + ABIE41_RS15670 0.51 +0.4 3,207,896 - ABIE41_RS15670 0.51 -0.1 3,207,896 - ABIE41_RS15670 0.51 -0.2 3,208,205 + -0.5 3,211,139 + -0.5 3,211,518 + ABIE41_RS15680 0.20 -0.6 3,211,601 + ABIE41_RS15680 0.25 -0.1 3,211,601 + ABIE41_RS15680 0.25 -0.4 3,211,601 + ABIE41_RS15680 0.25 +0.5 3,211,601 + ABIE41_RS15680 0.25 -0.4 3,211,601 + ABIE41_RS15680 0.25 -0.6 3,211,601 + ABIE41_RS15680 0.25 -1.3 3,211,601 + ABIE41_RS15680 0.25 +0.5 3,211,601 + ABIE41_RS15680 0.25 +1.8 3,211,602 - ABIE41_RS15680 0.25 +0.4 3,211,602 - ABIE41_RS15680 0.25 +0.3 3,211,602 - ABIE41_RS15680 0.25 +1.3 3,211,602 - ABIE41_RS15680 0.25 +0.1 3,211,607 + ABIE41_RS15680 0.26 +1.9 3,211,607 + ABIE41_RS15680 0.26 +1.4 3,211,608 - ABIE41_RS15680 0.26 -0.3 3,211,718 + ABIE41_RS15680 0.33 -0.5 3,211,719 - ABIE41_RS15680 0.33 +0.2 3,211,778 + ABIE41_RS15680 0.36 +0.2 3,211,779 - ABIE41_RS15680 0.36 +1.7 3,211,793 + ABIE41_RS15680 0.37 -0.4 3,211,793 + ABIE41_RS15680 0.37 +1.1 3,211,799 + ABIE41_RS15680 0.38 +0.7 3,211,799 + ABIE41_RS15680 0.38 -0.6 3,211,877 + ABIE41_RS15680 0.42 -0.1 3,211,914 - ABIE41_RS15680 0.45 +1.0 3,211,914 - ABIE41_RS15680 0.45 +0.5 3,212,136 - ABIE41_RS15680 0.58 +0.8
Or see this region's nucleotide sequence