Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09265

Experiment: DMSO control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS09255 and ABIE41_RS09260 are separated by 0 nucleotidesABIE41_RS09260 and ABIE41_RS09265 are separated by 41 nucleotidesABIE41_RS09265 and ABIE41_RS09270 are separated by 70 nucleotides ABIE41_RS09255: ABIE41_RS09255 - tetratricopeptide repeat protein, at 1,919,163 to 1,920,011 _RS09255 ABIE41_RS09260: ABIE41_RS09260 - alpha/beta fold hydrolase, at 1,920,012 to 1,920,857 _RS09260 ABIE41_RS09265: ABIE41_RS09265 - GNAT family N-acetyltransferase, at 1,920,899 to 1,921,378 _RS09265 ABIE41_RS09270: ABIE41_RS09270 - NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta, at 1,921,449 to 1,922,855 _RS09270 Position (kb) 1920 1921 1922Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1920.298 kb on + strand, within ABIE41_RS09260at 1920.299 kb on - strand, within ABIE41_RS09260at 1920.299 kb on - strand, within ABIE41_RS09260at 1920.305 kb on - strand, within ABIE41_RS09260at 1920.305 kb on - strand, within ABIE41_RS09260at 1920.305 kb on - strand, within ABIE41_RS09260at 1920.337 kb on + strand, within ABIE41_RS09260at 1920.337 kb on + strand, within ABIE41_RS09260at 1920.464 kb on - strand, within ABIE41_RS09260at 1920.464 kb on - strand, within ABIE41_RS09260at 1920.523 kb on + strand, within ABIE41_RS09260at 1920.524 kb on - strand, within ABIE41_RS09260at 1920.532 kb on + strand, within ABIE41_RS09260at 1920.533 kb on - strand, within ABIE41_RS09260at 1920.628 kb on + strand, within ABIE41_RS09260at 1920.815 kb on - strandat 1921.134 kb on + strand, within ABIE41_RS09265at 1921.134 kb on + strand, within ABIE41_RS09265at 1921.135 kb on - strand, within ABIE41_RS09265at 1921.135 kb on - strand, within ABIE41_RS09265at 1921.135 kb on - strand, within ABIE41_RS09265at 1921.135 kb on - strand, within ABIE41_RS09265at 1921.135 kb on - strand, within ABIE41_RS09265at 1921.135 kb on - strand, within ABIE41_RS09265at 1921.253 kb on + strand, within ABIE41_RS09265at 1921.624 kb on + strand, within ABIE41_RS09270at 1921.625 kb on - strand, within ABIE41_RS09270at 1921.819 kb on + strand, within ABIE41_RS09270at 1921.819 kb on + strand, within ABIE41_RS09270at 1921.823 kb on + strand, within ABIE41_RS09270at 1921.824 kb on - strand, within ABIE41_RS09270at 1921.942 kb on + strand, within ABIE41_RS09270at 1921.942 kb on + strand, within ABIE41_RS09270at 1921.943 kb on - strand, within ABIE41_RS09270at 1922.080 kb on + strand, within ABIE41_RS09270at 1922.080 kb on + strand, within ABIE41_RS09270at 1922.080 kb on + strand, within ABIE41_RS09270at 1922.080 kb on + strand, within ABIE41_RS09270at 1922.080 kb on + strand, within ABIE41_RS09270at 1922.080 kb on + strand, within ABIE41_RS09270at 1922.081 kb on - strand, within ABIE41_RS09270at 1922.081 kb on - strand, within ABIE41_RS09270at 1922.180 kb on - strand, within ABIE41_RS09270at 1922.180 kb on - strand, within ABIE41_RS09270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
remove
1,919,919 + ABIE41_RS09255 0.89 +1.1
1,919,919 + ABIE41_RS09255 0.89 -1.1
1,919,919 + ABIE41_RS09255 0.89 +0.6
1,919,919 + ABIE41_RS09255 0.89 +0.0
1,919,919 + ABIE41_RS09255 0.89 -1.0
1,919,920 - ABIE41_RS09255 0.89 -0.8
1,919,920 - ABIE41_RS09255 0.89 -0.4
1,919,920 - ABIE41_RS09255 0.89 -3.4
1,919,920 - ABIE41_RS09255 0.89 +0.4
1,919,920 - ABIE41_RS09255 0.89 -0.9
1,920,298 + ABIE41_RS09260 0.34 -0.2
1,920,299 - ABIE41_RS09260 0.34 -0.2
1,920,299 - ABIE41_RS09260 0.34 +0.4
1,920,305 - ABIE41_RS09260 0.35 -1.0
1,920,305 - ABIE41_RS09260 0.35 -0.9
1,920,305 - ABIE41_RS09260 0.35 +1.0
1,920,337 + ABIE41_RS09260 0.38 +0.8
1,920,337 + ABIE41_RS09260 0.38 -0.1
1,920,464 - ABIE41_RS09260 0.53 -0.2
1,920,464 - ABIE41_RS09260 0.53 -1.7
1,920,523 + ABIE41_RS09260 0.60 -0.1
1,920,524 - ABIE41_RS09260 0.61 +0.4
1,920,532 + ABIE41_RS09260 0.61 -1.2
1,920,533 - ABIE41_RS09260 0.62 -0.3
1,920,628 + ABIE41_RS09260 0.73 +0.4
1,920,815 - -1.4
1,921,134 + ABIE41_RS09265 0.49 +1.9
1,921,134 + ABIE41_RS09265 0.49 -0.1
1,921,135 - ABIE41_RS09265 0.49 +0.4
1,921,135 - ABIE41_RS09265 0.49 -0.0
1,921,135 - ABIE41_RS09265 0.49 +0.1
1,921,135 - ABIE41_RS09265 0.49 -0.0
1,921,135 - ABIE41_RS09265 0.49 +0.1
1,921,135 - ABIE41_RS09265 0.49 -1.0
1,921,253 + ABIE41_RS09265 0.74 -0.1
1,921,624 + ABIE41_RS09270 0.12 -1.4
1,921,625 - ABIE41_RS09270 0.13 -1.9
1,921,819 + ABIE41_RS09270 0.26 -0.0
1,921,819 + ABIE41_RS09270 0.26 +0.0
1,921,823 + ABIE41_RS09270 0.27 -0.1
1,921,824 - ABIE41_RS09270 0.27 +0.5
1,921,942 + ABIE41_RS09270 0.35 -0.2
1,921,942 + ABIE41_RS09270 0.35 -0.4
1,921,943 - ABIE41_RS09270 0.35 -0.4
1,922,080 + ABIE41_RS09270 0.45 -0.8
1,922,080 + ABIE41_RS09270 0.45 -2.5
1,922,080 + ABIE41_RS09270 0.45 +0.3
1,922,080 + ABIE41_RS09270 0.45 -0.0
1,922,080 + ABIE41_RS09270 0.45 -0.8
1,922,080 + ABIE41_RS09270 0.45 -1.7
1,922,081 - ABIE41_RS09270 0.45 -0.1
1,922,081 - ABIE41_RS09270 0.45 +0.2
1,922,180 - ABIE41_RS09270 0.52 -1.5
1,922,180 - ABIE41_RS09270 0.52 +0.3

Or see this region's nucleotide sequence