Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09255

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS09245 and ABIE41_RS09250 are separated by 144 nucleotidesABIE41_RS09250 and ABIE41_RS09255 are separated by 230 nucleotidesABIE41_RS09255 and ABIE41_RS09260 are separated by 0 nucleotidesABIE41_RS09260 and ABIE41_RS09265 are separated by 41 nucleotides ABIE41_RS09245: ABIE41_RS09245 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 1,917,439 to 1,918,554 _RS09245 ABIE41_RS09250: ABIE41_RS09250 - 30S ribosomal protein S21, at 1,918,699 to 1,918,932 _RS09250 ABIE41_RS09255: ABIE41_RS09255 - tetratricopeptide repeat protein, at 1,919,163 to 1,920,011 _RS09255 ABIE41_RS09260: ABIE41_RS09260 - alpha/beta fold hydrolase, at 1,920,012 to 1,920,857 _RS09260 ABIE41_RS09265: ABIE41_RS09265 - GNAT family N-acetyltransferase, at 1,920,899 to 1,921,378 _RS09265 Position (kb) 1919 1920 1921Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1918.208 kb on - strand, within ABIE41_RS09245at 1918.483 kb on + strandat 1918.484 kb on - strandat 1918.484 kb on - strandat 1918.484 kb on - strandat 1918.664 kb on + strandat 1919.125 kb on - strandat 1919.125 kb on - strandat 1919.299 kb on + strand, within ABIE41_RS09255at 1919.349 kb on + strand, within ABIE41_RS09255at 1919.349 kb on + strand, within ABIE41_RS09255at 1919.350 kb on - strand, within ABIE41_RS09255at 1919.350 kb on - strand, within ABIE41_RS09255at 1919.350 kb on - strand, within ABIE41_RS09255at 1919.370 kb on + strand, within ABIE41_RS09255at 1919.371 kb on - strand, within ABIE41_RS09255at 1919.371 kb on - strand, within ABIE41_RS09255at 1919.454 kb on - strand, within ABIE41_RS09255at 1919.541 kb on + strand, within ABIE41_RS09255at 1919.542 kb on - strand, within ABIE41_RS09255at 1919.542 kb on - strand, within ABIE41_RS09255at 1919.677 kb on - strand, within ABIE41_RS09255at 1919.700 kb on + strand, within ABIE41_RS09255at 1919.700 kb on + strand, within ABIE41_RS09255at 1919.757 kb on + strand, within ABIE41_RS09255at 1919.757 kb on + strand, within ABIE41_RS09255at 1919.757 kb on + strand, within ABIE41_RS09255at 1919.758 kb on - strand, within ABIE41_RS09255at 1919.758 kb on - strand, within ABIE41_RS09255at 1919.758 kb on - strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.919 kb on + strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1919.920 kb on - strand, within ABIE41_RS09255at 1920.298 kb on + strand, within ABIE41_RS09260at 1920.299 kb on - strand, within ABIE41_RS09260at 1920.299 kb on - strand, within ABIE41_RS09260at 1920.305 kb on - strand, within ABIE41_RS09260at 1920.305 kb on - strand, within ABIE41_RS09260at 1920.305 kb on - strand, within ABIE41_RS09260at 1920.337 kb on + strand, within ABIE41_RS09260at 1920.337 kb on + strand, within ABIE41_RS09260at 1920.464 kb on - strand, within ABIE41_RS09260at 1920.464 kb on - strand, within ABIE41_RS09260at 1920.523 kb on + strand, within ABIE41_RS09260at 1920.524 kb on - strand, within ABIE41_RS09260at 1920.532 kb on + strand, within ABIE41_RS09260at 1920.533 kb on - strand, within ABIE41_RS09260at 1920.628 kb on + strand, within ABIE41_RS09260at 1920.815 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,918,208 - ABIE41_RS09245 0.69 -2.7
1,918,483 + -0.6
1,918,484 - -0.9
1,918,484 - +3.0
1,918,484 - +1.0
1,918,664 + -1.0
1,919,125 - +1.3
1,919,125 - +1.1
1,919,299 + ABIE41_RS09255 0.16 -0.9
1,919,349 + ABIE41_RS09255 0.22 -0.1
1,919,349 + ABIE41_RS09255 0.22 +0.4
1,919,350 - ABIE41_RS09255 0.22 -1.0
1,919,350 - ABIE41_RS09255 0.22 -0.3
1,919,350 - ABIE41_RS09255 0.22 +1.0
1,919,370 + ABIE41_RS09255 0.24 -1.4
1,919,371 - ABIE41_RS09255 0.24 -1.6
1,919,371 - ABIE41_RS09255 0.24 -0.7
1,919,454 - ABIE41_RS09255 0.34 -1.0
1,919,541 + ABIE41_RS09255 0.45 +0.6
1,919,542 - ABIE41_RS09255 0.45 -0.3
1,919,542 - ABIE41_RS09255 0.45 -0.7
1,919,677 - ABIE41_RS09255 0.61 -1.1
1,919,700 + ABIE41_RS09255 0.63 -0.5
1,919,700 + ABIE41_RS09255 0.63 +1.0
1,919,757 + ABIE41_RS09255 0.70 +0.3
1,919,757 + ABIE41_RS09255 0.70 -1.5
1,919,757 + ABIE41_RS09255 0.70 +0.2
1,919,758 - ABIE41_RS09255 0.70 -1.9
1,919,758 - ABIE41_RS09255 0.70 -0.6
1,919,758 - ABIE41_RS09255 0.70 -0.1
1,919,919 + ABIE41_RS09255 0.89 +1.1
1,919,919 + ABIE41_RS09255 0.89 -1.1
1,919,919 + ABIE41_RS09255 0.89 +0.6
1,919,919 + ABIE41_RS09255 0.89 +0.0
1,919,919 + ABIE41_RS09255 0.89 -1.0
1,919,920 - ABIE41_RS09255 0.89 -0.8
1,919,920 - ABIE41_RS09255 0.89 -0.4
1,919,920 - ABIE41_RS09255 0.89 -3.4
1,919,920 - ABIE41_RS09255 0.89 +0.4
1,919,920 - ABIE41_RS09255 0.89 -0.9
1,920,298 + ABIE41_RS09260 0.34 -0.2
1,920,299 - ABIE41_RS09260 0.34 -0.2
1,920,299 - ABIE41_RS09260 0.34 +0.4
1,920,305 - ABIE41_RS09260 0.35 -1.0
1,920,305 - ABIE41_RS09260 0.35 -0.9
1,920,305 - ABIE41_RS09260 0.35 +1.0
1,920,337 + ABIE41_RS09260 0.38 +0.8
1,920,337 + ABIE41_RS09260 0.38 -0.1
1,920,464 - ABIE41_RS09260 0.53 -0.2
1,920,464 - ABIE41_RS09260 0.53 -1.7
1,920,523 + ABIE41_RS09260 0.60 -0.1
1,920,524 - ABIE41_RS09260 0.61 +0.4
1,920,532 + ABIE41_RS09260 0.61 -1.2
1,920,533 - ABIE41_RS09260 0.62 -0.3
1,920,628 + ABIE41_RS09260 0.73 +0.4
1,920,815 - -1.4

Or see this region's nucleotide sequence