Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS09245 and ABIE41_RS09250 are separated by 144 nucleotides ABIE41_RS09250 and ABIE41_RS09255 are separated by 230 nucleotides
ABIE41_RS09245: ABIE41_RS09245 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 1,917,439 to 1,918,554
_RS09245
ABIE41_RS09250: ABIE41_RS09250 - 30S ribosomal protein S21, at 1,918,699 to 1,918,932
_RS09250
ABIE41_RS09255: ABIE41_RS09255 - tetratricopeptide repeat protein, at 1,919,163 to 1,920,011
_RS09255
Position (kb) 1918
1919 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1917.922 kb on + strand, within ABIE41_RS09245 at 1917.976 kb on + strand, within ABIE41_RS09245 at 1918.208 kb on - strand, within ABIE41_RS09245 at 1918.483 kb on + strand at 1918.484 kb on - strand at 1918.484 kb on - strand at 1918.484 kb on - strand at 1918.664 kb on + strand at 1919.125 kb on - strand at 1919.125 kb on - strand at 1919.299 kb on + strand, within ABIE41_RS09255 at 1919.349 kb on + strand, within ABIE41_RS09255 at 1919.349 kb on + strand, within ABIE41_RS09255 at 1919.350 kb on - strand, within ABIE41_RS09255 at 1919.350 kb on - strand, within ABIE41_RS09255 at 1919.350 kb on - strand, within ABIE41_RS09255 at 1919.370 kb on + strand, within ABIE41_RS09255 at 1919.371 kb on - strand, within ABIE41_RS09255 at 1919.371 kb on - strand, within ABIE41_RS09255 at 1919.454 kb on - strand, within ABIE41_RS09255 at 1919.541 kb on + strand, within ABIE41_RS09255 at 1919.542 kb on - strand, within ABIE41_RS09255 at 1919.542 kb on - strand, within ABIE41_RS09255 at 1919.677 kb on - strand, within ABIE41_RS09255 at 1919.700 kb on + strand, within ABIE41_RS09255 at 1919.700 kb on + strand, within ABIE41_RS09255 at 1919.757 kb on + strand, within ABIE41_RS09255 at 1919.757 kb on + strand, within ABIE41_RS09255 at 1919.757 kb on + strand, within ABIE41_RS09255 at 1919.758 kb on - strand, within ABIE41_RS09255 at 1919.758 kb on - strand, within ABIE41_RS09255 at 1919.758 kb on - strand, within ABIE41_RS09255 at 1919.919 kb on + strand, within ABIE41_RS09255 at 1919.919 kb on + strand, within ABIE41_RS09255 at 1919.919 kb on + strand, within ABIE41_RS09255 at 1919.919 kb on + strand, within ABIE41_RS09255 at 1919.919 kb on + strand, within ABIE41_RS09255 at 1919.920 kb on - strand, within ABIE41_RS09255 at 1919.920 kb on - strand, within ABIE41_RS09255 at 1919.920 kb on - strand, within ABIE41_RS09255 at 1919.920 kb on - strand, within ABIE41_RS09255 at 1919.920 kb on - strand, within ABIE41_RS09255
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 1,917,922 + ABIE41_RS09245 0.43 -2.1 1,917,976 + ABIE41_RS09245 0.48 +1.2 1,918,208 - ABIE41_RS09245 0.69 -2.7 1,918,483 + -0.6 1,918,484 - -0.9 1,918,484 - +3.0 1,918,484 - +1.0 1,918,664 + -1.0 1,919,125 - +1.3 1,919,125 - +1.1 1,919,299 + ABIE41_RS09255 0.16 -0.9 1,919,349 + ABIE41_RS09255 0.22 -0.1 1,919,349 + ABIE41_RS09255 0.22 +0.4 1,919,350 - ABIE41_RS09255 0.22 -1.0 1,919,350 - ABIE41_RS09255 0.22 -0.3 1,919,350 - ABIE41_RS09255 0.22 +1.0 1,919,370 + ABIE41_RS09255 0.24 -1.4 1,919,371 - ABIE41_RS09255 0.24 -1.6 1,919,371 - ABIE41_RS09255 0.24 -0.7 1,919,454 - ABIE41_RS09255 0.34 -1.0 1,919,541 + ABIE41_RS09255 0.45 +0.6 1,919,542 - ABIE41_RS09255 0.45 -0.3 1,919,542 - ABIE41_RS09255 0.45 -0.7 1,919,677 - ABIE41_RS09255 0.61 -1.1 1,919,700 + ABIE41_RS09255 0.63 -0.5 1,919,700 + ABIE41_RS09255 0.63 +1.0 1,919,757 + ABIE41_RS09255 0.70 +0.3 1,919,757 + ABIE41_RS09255 0.70 -1.5 1,919,757 + ABIE41_RS09255 0.70 +0.2 1,919,758 - ABIE41_RS09255 0.70 -1.9 1,919,758 - ABIE41_RS09255 0.70 -0.6 1,919,758 - ABIE41_RS09255 0.70 -0.1 1,919,919 + ABIE41_RS09255 0.89 +1.1 1,919,919 + ABIE41_RS09255 0.89 -1.1 1,919,919 + ABIE41_RS09255 0.89 +0.6 1,919,919 + ABIE41_RS09255 0.89 +0.0 1,919,919 + ABIE41_RS09255 0.89 -1.0 1,919,920 - ABIE41_RS09255 0.89 -0.8 1,919,920 - ABIE41_RS09255 0.89 -0.4 1,919,920 - ABIE41_RS09255 0.89 -3.4 1,919,920 - ABIE41_RS09255 0.89 +0.4 1,919,920 - ABIE41_RS09255 0.89 -0.9
Or see this region's nucleotide sequence