Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09160

Experiment: DMSO control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS09155 and ABIE41_RS09160 are separated by 180 nucleotidesABIE41_RS09160 and ABIE41_RS09165 are separated by 369 nucleotides ABIE41_RS09155: ABIE41_RS09155 - MurR/RpiR family transcriptional regulator, at 1,897,043 to 1,897,922 _RS09155 ABIE41_RS09160: ABIE41_RS09160 - aspartate/glutamate racemase family protein, at 1,898,103 to 1,898,849 _RS09160 ABIE41_RS09165: ABIE41_RS09165 - hypothetical protein, at 1,899,219 to 1,899,917 _RS09165 Position (kb) 1898 1899Strain fitness (log2 ratio) -2 -1 0 1 2at 1897.420 kb on - strand, within ABIE41_RS09155at 1897.428 kb on + strand, within ABIE41_RS09155at 1897.428 kb on + strand, within ABIE41_RS09155at 1897.429 kb on - strand, within ABIE41_RS09155at 1897.443 kb on + strand, within ABIE41_RS09155at 1897.465 kb on + strand, within ABIE41_RS09155at 1897.466 kb on - strand, within ABIE41_RS09155at 1897.466 kb on - strand, within ABIE41_RS09155at 1897.466 kb on - strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.468 kb on - strand, within ABIE41_RS09155at 1897.468 kb on - strand, within ABIE41_RS09155at 1897.642 kb on + strand, within ABIE41_RS09155at 1897.642 kb on + strand, within ABIE41_RS09155at 1897.643 kb on - strand, within ABIE41_RS09155at 1897.643 kb on - strand, within ABIE41_RS09155at 1897.643 kb on - strand, within ABIE41_RS09155at 1897.643 kb on - strand, within ABIE41_RS09155at 1897.643 kb on - strand, within ABIE41_RS09155at 1898.229 kb on + strand, within ABIE41_RS09160at 1898.229 kb on + strand, within ABIE41_RS09160at 1898.229 kb on + strand, within ABIE41_RS09160at 1898.229 kb on + strand, within ABIE41_RS09160at 1898.230 kb on - strand, within ABIE41_RS09160at 1898.230 kb on - strand, within ABIE41_RS09160at 1898.230 kb on - strand, within ABIE41_RS09160at 1898.230 kb on - strand, within ABIE41_RS09160at 1898.231 kb on + strand, within ABIE41_RS09160at 1898.231 kb on + strand, within ABIE41_RS09160at 1898.232 kb on - strand, within ABIE41_RS09160at 1898.232 kb on - strand, within ABIE41_RS09160at 1898.276 kb on + strand, within ABIE41_RS09160at 1898.304 kb on + strand, within ABIE41_RS09160at 1898.305 kb on - strand, within ABIE41_RS09160at 1898.305 kb on - strand, within ABIE41_RS09160at 1898.470 kb on - strand, within ABIE41_RS09160at 1898.993 kb on + strandat 1898.993 kb on + strandat 1898.993 kb on + strandat 1898.993 kb on + strandat 1898.993 kb on + strandat 1898.994 kb on - strandat 1898.994 kb on - strandat 1898.994 kb on - strandat 1898.994 kb on - strandat 1899.180 kb on + strandat 1899.180 kb on + strandat 1899.181 kb on - strandat 1899.319 kb on - strand, within ABIE41_RS09165at 1899.537 kb on + strand, within ABIE41_RS09165at 1899.538 kb on - strand, within ABIE41_RS09165at 1899.572 kb on + strand, within ABIE41_RS09165at 1899.572 kb on + strand, within ABIE41_RS09165at 1899.572 kb on + strand, within ABIE41_RS09165at 1899.572 kb on + strand, within ABIE41_RS09165at 1899.573 kb on - strand, within ABIE41_RS09165at 1899.808 kb on - strand, within ABIE41_RS09165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
remove
1,897,420 - ABIE41_RS09155 0.43 +0.3
1,897,428 + ABIE41_RS09155 0.44 -1.8
1,897,428 + ABIE41_RS09155 0.44 -0.1
1,897,429 - ABIE41_RS09155 0.44 +2.1
1,897,443 + ABIE41_RS09155 0.45 -1.0
1,897,465 + ABIE41_RS09155 0.48 -0.2
1,897,466 - ABIE41_RS09155 0.48 -0.0
1,897,466 - ABIE41_RS09155 0.48 +0.1
1,897,466 - ABIE41_RS09155 0.48 -0.2
1,897,467 + ABIE41_RS09155 0.48 -0.4
1,897,467 + ABIE41_RS09155 0.48 -0.5
1,897,467 + ABIE41_RS09155 0.48 -0.0
1,897,467 + ABIE41_RS09155 0.48 +0.6
1,897,467 + ABIE41_RS09155 0.48 -0.1
1,897,467 + ABIE41_RS09155 0.48 -0.1
1,897,467 + ABIE41_RS09155 0.48 -0.1
1,897,467 + ABIE41_RS09155 0.48 +0.7
1,897,468 - ABIE41_RS09155 0.48 -0.4
1,897,468 - ABIE41_RS09155 0.48 -0.0
1,897,642 + ABIE41_RS09155 0.68 -0.4
1,897,642 + ABIE41_RS09155 0.68 +0.5
1,897,643 - ABIE41_RS09155 0.68 +0.9
1,897,643 - ABIE41_RS09155 0.68 -0.2
1,897,643 - ABIE41_RS09155 0.68 -0.6
1,897,643 - ABIE41_RS09155 0.68 +0.8
1,897,643 - ABIE41_RS09155 0.68 -0.2
1,898,229 + ABIE41_RS09160 0.17 -0.9
1,898,229 + ABIE41_RS09160 0.17 -0.1
1,898,229 + ABIE41_RS09160 0.17 +1.1
1,898,229 + ABIE41_RS09160 0.17 -0.8
1,898,230 - ABIE41_RS09160 0.17 +0.5
1,898,230 - ABIE41_RS09160 0.17 +0.6
1,898,230 - ABIE41_RS09160 0.17 -0.6
1,898,230 - ABIE41_RS09160 0.17 +0.4
1,898,231 + ABIE41_RS09160 0.17 -0.1
1,898,231 + ABIE41_RS09160 0.17 +1.1
1,898,232 - ABIE41_RS09160 0.17 +2.0
1,898,232 - ABIE41_RS09160 0.17 +0.4
1,898,276 + ABIE41_RS09160 0.23 +0.5
1,898,304 + ABIE41_RS09160 0.27 +1.4
1,898,305 - ABIE41_RS09160 0.27 +0.7
1,898,305 - ABIE41_RS09160 0.27 +0.5
1,898,470 - ABIE41_RS09160 0.49 +0.1
1,898,993 + +0.3
1,898,993 + +0.6
1,898,993 + -0.2
1,898,993 + +0.5
1,898,993 + -2.4
1,898,994 - +2.4
1,898,994 - -0.6
1,898,994 - -0.6
1,898,994 - +0.4
1,899,180 + -0.2
1,899,180 + +1.0
1,899,181 - -1.0
1,899,319 - ABIE41_RS09165 0.14 -0.2
1,899,537 + ABIE41_RS09165 0.45 -1.9
1,899,538 - ABIE41_RS09165 0.46 +1.6
1,899,572 + ABIE41_RS09165 0.51 +0.6
1,899,572 + ABIE41_RS09165 0.51 -0.0
1,899,572 + ABIE41_RS09165 0.51 +0.1
1,899,572 + ABIE41_RS09165 0.51 +0.1
1,899,573 - ABIE41_RS09165 0.51 +0.7
1,899,808 - ABIE41_RS09165 0.84 -1.0

Or see this region's nucleotide sequence