Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09150

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS09145 and ABIE41_RS09150 are separated by 174 nucleotidesABIE41_RS09150 and ABIE41_RS09155 are separated by 138 nucleotides ABIE41_RS09145: ABIE41_RS09145 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 1,892,948 to 1,894,795 _RS09145 ABIE41_RS09150: ABIE41_RS09150 - 5-dehydro-2-deoxygluconokinase, at 1,894,970 to 1,896,904 _RS09150 ABIE41_RS09155: ABIE41_RS09155 - MurR/RpiR family transcriptional regulator, at 1,897,043 to 1,897,922 _RS09155 Position (kb) 1894 1895 1896 1897Strain fitness (log2 ratio) -2 -1 0 1 2at 1894.209 kb on + strand, within ABIE41_RS09145at 1894.209 kb on + strand, within ABIE41_RS09145at 1894.209 kb on + strand, within ABIE41_RS09145at 1894.209 kb on + strand, within ABIE41_RS09145at 1894.209 kb on + strand, within ABIE41_RS09145at 1894.210 kb on - strand, within ABIE41_RS09145at 1894.210 kb on - strand, within ABIE41_RS09145at 1894.210 kb on - strand, within ABIE41_RS09145at 1894.210 kb on - strand, within ABIE41_RS09145at 1894.210 kb on - strand, within ABIE41_RS09145at 1894.569 kb on + strand, within ABIE41_RS09145at 1894.569 kb on + strand, within ABIE41_RS09145at 1894.570 kb on - strand, within ABIE41_RS09145at 1894.575 kb on - strand, within ABIE41_RS09145at 1894.749 kb on + strandat 1894.749 kb on + strandat 1894.749 kb on + strandat 1894.750 kb on - strandat 1894.895 kb on - strandat 1895.313 kb on + strand, within ABIE41_RS09150at 1895.313 kb on + strand, within ABIE41_RS09150at 1895.313 kb on + strand, within ABIE41_RS09150at 1895.313 kb on + strand, within ABIE41_RS09150at 1895.314 kb on - strand, within ABIE41_RS09150at 1895.314 kb on - strand, within ABIE41_RS09150at 1895.314 kb on - strand, within ABIE41_RS09150at 1895.479 kb on - strand, within ABIE41_RS09150at 1895.479 kb on - strand, within ABIE41_RS09150at 1895.479 kb on - strand, within ABIE41_RS09150at 1895.497 kb on + strand, within ABIE41_RS09150at 1895.497 kb on + strand, within ABIE41_RS09150at 1895.497 kb on + strand, within ABIE41_RS09150at 1895.497 kb on + strand, within ABIE41_RS09150at 1895.498 kb on - strand, within ABIE41_RS09150at 1895.667 kb on + strand, within ABIE41_RS09150at 1895.866 kb on + strand, within ABIE41_RS09150at 1895.867 kb on - strand, within ABIE41_RS09150at 1895.904 kb on + strand, within ABIE41_RS09150at 1895.904 kb on + strand, within ABIE41_RS09150at 1895.904 kb on + strand, within ABIE41_RS09150at 1895.904 kb on + strand, within ABIE41_RS09150at 1896.069 kb on + strand, within ABIE41_RS09150at 1896.069 kb on + strand, within ABIE41_RS09150at 1896.069 kb on + strand, within ABIE41_RS09150at 1896.069 kb on + strand, within ABIE41_RS09150at 1896.069 kb on + strand, within ABIE41_RS09150at 1896.135 kb on + strand, within ABIE41_RS09150at 1896.135 kb on + strand, within ABIE41_RS09150at 1896.135 kb on + strand, within ABIE41_RS09150at 1896.136 kb on - strand, within ABIE41_RS09150at 1896.136 kb on - strand, within ABIE41_RS09150at 1896.324 kb on + strand, within ABIE41_RS09150at 1896.324 kb on + strand, within ABIE41_RS09150at 1896.324 kb on + strand, within ABIE41_RS09150at 1896.324 kb on + strand, within ABIE41_RS09150at 1896.325 kb on - strand, within ABIE41_RS09150at 1896.325 kb on - strand, within ABIE41_RS09150at 1896.397 kb on + strand, within ABIE41_RS09150at 1896.397 kb on + strand, within ABIE41_RS09150at 1896.416 kb on - strand, within ABIE41_RS09150at 1896.559 kb on - strand, within ABIE41_RS09150at 1896.559 kb on - strand, within ABIE41_RS09150at 1896.757 kb on + strandat 1896.758 kb on - strandat 1896.986 kb on + strandat 1897.420 kb on - strand, within ABIE41_RS09155at 1897.428 kb on + strand, within ABIE41_RS09155at 1897.428 kb on + strand, within ABIE41_RS09155at 1897.429 kb on - strand, within ABIE41_RS09155at 1897.443 kb on + strand, within ABIE41_RS09155at 1897.465 kb on + strand, within ABIE41_RS09155at 1897.466 kb on - strand, within ABIE41_RS09155at 1897.466 kb on - strand, within ABIE41_RS09155at 1897.466 kb on - strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.467 kb on + strand, within ABIE41_RS09155at 1897.468 kb on - strand, within ABIE41_RS09155at 1897.468 kb on - strand, within ABIE41_RS09155at 1897.642 kb on + strand, within ABIE41_RS09155at 1897.642 kb on + strand, within ABIE41_RS09155at 1897.643 kb on - strand, within ABIE41_RS09155at 1897.643 kb on - strand, within ABIE41_RS09155at 1897.643 kb on - strand, within ABIE41_RS09155at 1897.643 kb on - strand, within ABIE41_RS09155at 1897.643 kb on - strand, within ABIE41_RS09155

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,894,209 + ABIE41_RS09145 0.68 +0.6
1,894,209 + ABIE41_RS09145 0.68 +0.7
1,894,209 + ABIE41_RS09145 0.68 +0.4
1,894,209 + ABIE41_RS09145 0.68 +2.2
1,894,209 + ABIE41_RS09145 0.68 +0.1
1,894,210 - ABIE41_RS09145 0.68 -0.4
1,894,210 - ABIE41_RS09145 0.68 +1.3
1,894,210 - ABIE41_RS09145 0.68 -0.2
1,894,210 - ABIE41_RS09145 0.68 -0.3
1,894,210 - ABIE41_RS09145 0.68 +0.6
1,894,569 + ABIE41_RS09145 0.88 +0.4
1,894,569 + ABIE41_RS09145 0.88 +1.0
1,894,570 - ABIE41_RS09145 0.88 -1.5
1,894,575 - ABIE41_RS09145 0.88 +0.6
1,894,749 + +1.0
1,894,749 + -0.6
1,894,749 + +1.1
1,894,750 - +0.3
1,894,895 - +0.5
1,895,313 + ABIE41_RS09150 0.18 +2.0
1,895,313 + ABIE41_RS09150 0.18 +0.1
1,895,313 + ABIE41_RS09150 0.18 +2.0
1,895,313 + ABIE41_RS09150 0.18 +0.2
1,895,314 - ABIE41_RS09150 0.18 +0.1
1,895,314 - ABIE41_RS09150 0.18 -0.2
1,895,314 - ABIE41_RS09150 0.18 -0.2
1,895,479 - ABIE41_RS09150 0.26 -0.5
1,895,479 - ABIE41_RS09150 0.26 -0.5
1,895,479 - ABIE41_RS09150 0.26 +0.3
1,895,497 + ABIE41_RS09150 0.27 +1.3
1,895,497 + ABIE41_RS09150 0.27 +0.3
1,895,497 + ABIE41_RS09150 0.27 -0.3
1,895,497 + ABIE41_RS09150 0.27 -1.0
1,895,498 - ABIE41_RS09150 0.27 -1.6
1,895,667 + ABIE41_RS09150 0.36 -1.0
1,895,866 + ABIE41_RS09150 0.46 +1.1
1,895,867 - ABIE41_RS09150 0.46 +0.5
1,895,904 + ABIE41_RS09150 0.48 +0.6
1,895,904 + ABIE41_RS09150 0.48 -1.5
1,895,904 + ABIE41_RS09150 0.48 -0.8
1,895,904 + ABIE41_RS09150 0.48 +0.3
1,896,069 + ABIE41_RS09150 0.57 +0.1
1,896,069 + ABIE41_RS09150 0.57 -0.0
1,896,069 + ABIE41_RS09150 0.57 -0.1
1,896,069 + ABIE41_RS09150 0.57 -0.0
1,896,069 + ABIE41_RS09150 0.57 -0.1
1,896,135 + ABIE41_RS09150 0.60 +0.7
1,896,135 + ABIE41_RS09150 0.60 +0.4
1,896,135 + ABIE41_RS09150 0.60 +1.4
1,896,136 - ABIE41_RS09150 0.60 -0.8
1,896,136 - ABIE41_RS09150 0.60 +1.0
1,896,324 + ABIE41_RS09150 0.70 -0.1
1,896,324 + ABIE41_RS09150 0.70 -0.6
1,896,324 + ABIE41_RS09150 0.70 +0.8
1,896,324 + ABIE41_RS09150 0.70 -0.6
1,896,325 - ABIE41_RS09150 0.70 -1.5
1,896,325 - ABIE41_RS09150 0.70 -1.5
1,896,397 + ABIE41_RS09150 0.74 -0.4
1,896,397 + ABIE41_RS09150 0.74 -0.0
1,896,416 - ABIE41_RS09150 0.75 +0.6
1,896,559 - ABIE41_RS09150 0.82 +1.8
1,896,559 - ABIE41_RS09150 0.82 +0.3
1,896,757 + +0.1
1,896,758 - -0.6
1,896,986 + +0.7
1,897,420 - ABIE41_RS09155 0.43 +0.3
1,897,428 + ABIE41_RS09155 0.44 -1.8
1,897,428 + ABIE41_RS09155 0.44 -0.1
1,897,429 - ABIE41_RS09155 0.44 +2.1
1,897,443 + ABIE41_RS09155 0.45 -1.0
1,897,465 + ABIE41_RS09155 0.48 -0.2
1,897,466 - ABIE41_RS09155 0.48 -0.0
1,897,466 - ABIE41_RS09155 0.48 +0.1
1,897,466 - ABIE41_RS09155 0.48 -0.2
1,897,467 + ABIE41_RS09155 0.48 -0.4
1,897,467 + ABIE41_RS09155 0.48 -0.5
1,897,467 + ABIE41_RS09155 0.48 -0.0
1,897,467 + ABIE41_RS09155 0.48 +0.6
1,897,467 + ABIE41_RS09155 0.48 -0.1
1,897,467 + ABIE41_RS09155 0.48 -0.1
1,897,467 + ABIE41_RS09155 0.48 -0.1
1,897,467 + ABIE41_RS09155 0.48 +0.7
1,897,468 - ABIE41_RS09155 0.48 -0.4
1,897,468 - ABIE41_RS09155 0.48 -0.0
1,897,642 + ABIE41_RS09155 0.68 -0.4
1,897,642 + ABIE41_RS09155 0.68 +0.5
1,897,643 - ABIE41_RS09155 0.68 +0.9
1,897,643 - ABIE41_RS09155 0.68 -0.2
1,897,643 - ABIE41_RS09155 0.68 -0.6
1,897,643 - ABIE41_RS09155 0.68 +0.8
1,897,643 - ABIE41_RS09155 0.68 -0.2

Or see this region's nucleotide sequence