Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09145

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS09140 and ABIE41_RS09145 are separated by 149 nucleotidesABIE41_RS09145 and ABIE41_RS09150 are separated by 174 nucleotides ABIE41_RS09140: ABIE41_RS09140 - myo-inosose-2 dehydratase, at 1,891,914 to 1,892,798 _RS09140 ABIE41_RS09145: ABIE41_RS09145 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 1,892,948 to 1,894,795 _RS09145 ABIE41_RS09150: ABIE41_RS09150 - 5-dehydro-2-deoxygluconokinase, at 1,894,970 to 1,896,904 _RS09150 Position (kb) 1892 1893 1894 1895Strain fitness (log2 ratio) -2 -1 0 1 2at 1891.972 kb on + strandat 1891.973 kb on - strandat 1891.973 kb on - strandat 1891.973 kb on - strandat 1892.062 kb on + strand, within ABIE41_RS09140at 1892.063 kb on - strand, within ABIE41_RS09140at 1892.092 kb on + strand, within ABIE41_RS09140at 1892.092 kb on + strand, within ABIE41_RS09140at 1892.093 kb on - strand, within ABIE41_RS09140at 1892.093 kb on - strand, within ABIE41_RS09140at 1892.093 kb on - strand, within ABIE41_RS09140at 1892.333 kb on + strand, within ABIE41_RS09140at 1892.333 kb on + strand, within ABIE41_RS09140at 1892.344 kb on + strand, within ABIE41_RS09140at 1892.345 kb on - strand, within ABIE41_RS09140at 1892.345 kb on - strand, within ABIE41_RS09140at 1892.345 kb on - strand, within ABIE41_RS09140at 1892.593 kb on + strand, within ABIE41_RS09140at 1892.861 kb on + strandat 1892.950 kb on - strandat 1892.985 kb on + strandat 1892.985 kb on + strandat 1892.985 kb on + strandat 1893.381 kb on + strand, within ABIE41_RS09145at 1893.381 kb on + strand, within ABIE41_RS09145at 1893.381 kb on + strand, within ABIE41_RS09145at 1893.381 kb on + strand, within ABIE41_RS09145at 1893.382 kb on - strand, within ABIE41_RS09145at 1893.460 kb on - strand, within ABIE41_RS09145at 1893.492 kb on + strand, within ABIE41_RS09145at 1893.493 kb on - strand, within ABIE41_RS09145at 1893.493 kb on - strand, within ABIE41_RS09145at 1893.493 kb on - strand, within ABIE41_RS09145at 1893.493 kb on - strand, within ABIE41_RS09145at 1894.209 kb on + strand, within ABIE41_RS09145at 1894.209 kb on + strand, within ABIE41_RS09145at 1894.209 kb on + strand, within ABIE41_RS09145at 1894.209 kb on + strand, within ABIE41_RS09145at 1894.209 kb on + strand, within ABIE41_RS09145at 1894.210 kb on - strand, within ABIE41_RS09145at 1894.210 kb on - strand, within ABIE41_RS09145at 1894.210 kb on - strand, within ABIE41_RS09145at 1894.210 kb on - strand, within ABIE41_RS09145at 1894.210 kb on - strand, within ABIE41_RS09145at 1894.569 kb on + strand, within ABIE41_RS09145at 1894.569 kb on + strand, within ABIE41_RS09145at 1894.570 kb on - strand, within ABIE41_RS09145at 1894.575 kb on - strand, within ABIE41_RS09145at 1894.749 kb on + strandat 1894.749 kb on + strandat 1894.749 kb on + strandat 1894.750 kb on - strandat 1894.895 kb on - strandat 1895.313 kb on + strand, within ABIE41_RS09150at 1895.313 kb on + strand, within ABIE41_RS09150at 1895.313 kb on + strand, within ABIE41_RS09150at 1895.313 kb on + strand, within ABIE41_RS09150at 1895.314 kb on - strand, within ABIE41_RS09150at 1895.314 kb on - strand, within ABIE41_RS09150at 1895.314 kb on - strand, within ABIE41_RS09150at 1895.479 kb on - strand, within ABIE41_RS09150at 1895.479 kb on - strand, within ABIE41_RS09150at 1895.479 kb on - strand, within ABIE41_RS09150at 1895.497 kb on + strand, within ABIE41_RS09150at 1895.497 kb on + strand, within ABIE41_RS09150at 1895.497 kb on + strand, within ABIE41_RS09150at 1895.497 kb on + strand, within ABIE41_RS09150at 1895.498 kb on - strand, within ABIE41_RS09150at 1895.667 kb on + strand, within ABIE41_RS09150

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,891,972 + -0.4
1,891,973 - +0.8
1,891,973 - -2.7
1,891,973 - -0.0
1,892,062 + ABIE41_RS09140 0.17 -1.6
1,892,063 - ABIE41_RS09140 0.17 -0.7
1,892,092 + ABIE41_RS09140 0.20 +0.6
1,892,092 + ABIE41_RS09140 0.20 -0.3
1,892,093 - ABIE41_RS09140 0.20 +0.1
1,892,093 - ABIE41_RS09140 0.20 +1.1
1,892,093 - ABIE41_RS09140 0.20 +0.3
1,892,333 + ABIE41_RS09140 0.47 +0.1
1,892,333 + ABIE41_RS09140 0.47 -0.0
1,892,344 + ABIE41_RS09140 0.49 -0.2
1,892,345 - ABIE41_RS09140 0.49 +0.6
1,892,345 - ABIE41_RS09140 0.49 -0.8
1,892,345 - ABIE41_RS09140 0.49 +0.4
1,892,593 + ABIE41_RS09140 0.77 -0.4
1,892,861 + -0.1
1,892,950 - +0.1
1,892,985 + -0.7
1,892,985 + -1.0
1,892,985 + -2.2
1,893,381 + ABIE41_RS09145 0.23 -0.5
1,893,381 + ABIE41_RS09145 0.23 -0.5
1,893,381 + ABIE41_RS09145 0.23 +2.0
1,893,381 + ABIE41_RS09145 0.23 -0.5
1,893,382 - ABIE41_RS09145 0.23 +1.0
1,893,460 - ABIE41_RS09145 0.28 -0.3
1,893,492 + ABIE41_RS09145 0.29 -0.2
1,893,493 - ABIE41_RS09145 0.29 +1.2
1,893,493 - ABIE41_RS09145 0.29 +0.5
1,893,493 - ABIE41_RS09145 0.29 +0.6
1,893,493 - ABIE41_RS09145 0.29 -1.0
1,894,209 + ABIE41_RS09145 0.68 +0.6
1,894,209 + ABIE41_RS09145 0.68 +0.7
1,894,209 + ABIE41_RS09145 0.68 +0.4
1,894,209 + ABIE41_RS09145 0.68 +2.2
1,894,209 + ABIE41_RS09145 0.68 +0.1
1,894,210 - ABIE41_RS09145 0.68 -0.4
1,894,210 - ABIE41_RS09145 0.68 +1.3
1,894,210 - ABIE41_RS09145 0.68 -0.2
1,894,210 - ABIE41_RS09145 0.68 -0.3
1,894,210 - ABIE41_RS09145 0.68 +0.6
1,894,569 + ABIE41_RS09145 0.88 +0.4
1,894,569 + ABIE41_RS09145 0.88 +1.0
1,894,570 - ABIE41_RS09145 0.88 -1.5
1,894,575 - ABIE41_RS09145 0.88 +0.6
1,894,749 + +1.0
1,894,749 + -0.6
1,894,749 + +1.1
1,894,750 - +0.3
1,894,895 - +0.5
1,895,313 + ABIE41_RS09150 0.18 +2.0
1,895,313 + ABIE41_RS09150 0.18 +0.1
1,895,313 + ABIE41_RS09150 0.18 +2.0
1,895,313 + ABIE41_RS09150 0.18 +0.2
1,895,314 - ABIE41_RS09150 0.18 +0.1
1,895,314 - ABIE41_RS09150 0.18 -0.2
1,895,314 - ABIE41_RS09150 0.18 -0.2
1,895,479 - ABIE41_RS09150 0.26 -0.5
1,895,479 - ABIE41_RS09150 0.26 -0.5
1,895,479 - ABIE41_RS09150 0.26 +0.3
1,895,497 + ABIE41_RS09150 0.27 +1.3
1,895,497 + ABIE41_RS09150 0.27 +0.3
1,895,497 + ABIE41_RS09150 0.27 -0.3
1,895,497 + ABIE41_RS09150 0.27 -1.0
1,895,498 - ABIE41_RS09150 0.27 -1.6
1,895,667 + ABIE41_RS09150 0.36 -1.0

Or see this region's nucleotide sequence