Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07970

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07965 and ABIE41_RS07970 are separated by 40 nucleotidesABIE41_RS07970 and ABIE41_RS07975 are separated by 140 nucleotides ABIE41_RS07965: ABIE41_RS07965 - MFS transporter, at 1,635,696 to 1,636,889 _RS07965 ABIE41_RS07970: ABIE41_RS07970 - acetyl-CoA acetyltransferase, at 1,636,930 to 1,638,099 _RS07970 ABIE41_RS07975: ABIE41_RS07975 - DMT family transporter, at 1,638,240 to 1,639,142 _RS07975 Position (kb) 1636 1637 1638 1639Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1635.949 kb on + strand, within ABIE41_RS07965at 1635.949 kb on + strand, within ABIE41_RS07965at 1635.949 kb on + strand, within ABIE41_RS07965at 1635.949 kb on + strand, within ABIE41_RS07965at 1635.949 kb on + strand, within ABIE41_RS07965at 1635.950 kb on - strand, within ABIE41_RS07965at 1635.950 kb on - strand, within ABIE41_RS07965at 1635.950 kb on - strand, within ABIE41_RS07965at 1635.950 kb on - strand, within ABIE41_RS07965at 1635.950 kb on - strand, within ABIE41_RS07965at 1635.950 kb on - strand, within ABIE41_RS07965at 1635.950 kb on - strand, within ABIE41_RS07965at 1635.950 kb on - strand, within ABIE41_RS07965at 1635.950 kb on - strand, within ABIE41_RS07965at 1635.950 kb on - strand, within ABIE41_RS07965at 1635.950 kb on - strand, within ABIE41_RS07965at 1636.108 kb on + strand, within ABIE41_RS07965at 1636.108 kb on + strand, within ABIE41_RS07965at 1636.109 kb on - strand, within ABIE41_RS07965at 1636.196 kb on + strand, within ABIE41_RS07965at 1636.196 kb on + strand, within ABIE41_RS07965at 1636.196 kb on + strand, within ABIE41_RS07965at 1636.197 kb on - strand, within ABIE41_RS07965at 1636.197 kb on - strand, within ABIE41_RS07965at 1636.197 kb on - strand, within ABIE41_RS07965at 1636.197 kb on - strand, within ABIE41_RS07965at 1636.197 kb on - strand, within ABIE41_RS07965at 1636.198 kb on + strand, within ABIE41_RS07965at 1636.198 kb on + strand, within ABIE41_RS07965at 1636.198 kb on + strand, within ABIE41_RS07965at 1636.198 kb on + strand, within ABIE41_RS07965at 1636.198 kb on + strand, within ABIE41_RS07965at 1636.198 kb on + strand, within ABIE41_RS07965at 1636.199 kb on - strand, within ABIE41_RS07965at 1636.199 kb on - strand, within ABIE41_RS07965at 1636.199 kb on - strand, within ABIE41_RS07965at 1636.199 kb on - strand, within ABIE41_RS07965at 1636.240 kb on + strand, within ABIE41_RS07965at 1636.240 kb on + strand, within ABIE41_RS07965at 1636.240 kb on + strand, within ABIE41_RS07965at 1636.240 kb on + strand, within ABIE41_RS07965at 1636.240 kb on + strand, within ABIE41_RS07965at 1636.241 kb on - strand, within ABIE41_RS07965at 1636.807 kb on - strandat 1636.858 kb on + strandat 1636.858 kb on + strandat 1636.858 kb on + strandat 1636.958 kb on + strandat 1636.958 kb on + strandat 1636.958 kb on + strandat 1636.958 kb on + strandat 1636.958 kb on + strandat 1636.959 kb on - strandat 1636.959 kb on - strandat 1636.959 kb on - strandat 1636.959 kb on - strandat 1637.213 kb on + strand, within ABIE41_RS07970at 1637.214 kb on - strand, within ABIE41_RS07970at 1637.498 kb on + strand, within ABIE41_RS07970at 1637.498 kb on + strand, within ABIE41_RS07970at 1637.499 kb on - strand, within ABIE41_RS07970at 1637.562 kb on - strand, within ABIE41_RS07970at 1637.643 kb on - strand, within ABIE41_RS07970at 1637.643 kb on - strand, within ABIE41_RS07970at 1637.708 kb on + strand, within ABIE41_RS07970at 1637.708 kb on + strand, within ABIE41_RS07970at 1637.708 kb on + strand, within ABIE41_RS07970at 1637.708 kb on + strand, within ABIE41_RS07970at 1637.708 kb on + strand, within ABIE41_RS07970at 1637.709 kb on - strand, within ABIE41_RS07970at 1637.709 kb on - strand, within ABIE41_RS07970at 1637.709 kb on - strand, within ABIE41_RS07970at 1637.709 kb on - strand, within ABIE41_RS07970at 1637.709 kb on - strand, within ABIE41_RS07970at 1638.069 kb on + strandat 1638.070 kb on - strandat 1638.070 kb on - strandat 1638.517 kb on + strand, within ABIE41_RS07975at 1638.517 kb on + strand, within ABIE41_RS07975at 1638.517 kb on + strand, within ABIE41_RS07975at 1638.517 kb on + strand, within ABIE41_RS07975at 1638.517 kb on + strand, within ABIE41_RS07975at 1638.517 kb on + strand, within ABIE41_RS07975at 1638.517 kb on + strand, within ABIE41_RS07975at 1638.517 kb on + strand, within ABIE41_RS07975at 1638.517 kb on + strand, within ABIE41_RS07975at 1638.518 kb on - strand, within ABIE41_RS07975at 1638.518 kb on - strand, within ABIE41_RS07975at 1638.518 kb on - strand, within ABIE41_RS07975at 1638.518 kb on - strand, within ABIE41_RS07975at 1638.518 kb on - strand, within ABIE41_RS07975at 1638.518 kb on - strand, within ABIE41_RS07975at 1638.832 kb on + strand, within ABIE41_RS07975at 1638.832 kb on + strand, within ABIE41_RS07975at 1638.833 kb on - strand, within ABIE41_RS07975at 1638.833 kb on - strand, within ABIE41_RS07975at 1638.833 kb on - strand, within ABIE41_RS07975at 1638.833 kb on - strand, within ABIE41_RS07975at 1638.922 kb on + strand, within ABIE41_RS07975at 1638.922 kb on + strand, within ABIE41_RS07975at 1638.922 kb on + strand, within ABIE41_RS07975at 1638.922 kb on + strand, within ABIE41_RS07975at 1638.922 kb on + strand, within ABIE41_RS07975at 1638.923 kb on - strand, within ABIE41_RS07975at 1638.923 kb on - strand, within ABIE41_RS07975at 1638.923 kb on - strand, within ABIE41_RS07975at 1638.923 kb on - strand, within ABIE41_RS07975at 1638.923 kb on - strand, within ABIE41_RS07975

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,635,949 + ABIE41_RS07965 0.21 -0.2
1,635,949 + ABIE41_RS07965 0.21 +4.3
1,635,949 + ABIE41_RS07965 0.21 -0.2
1,635,949 + ABIE41_RS07965 0.21 -0.4
1,635,949 + ABIE41_RS07965 0.21 +1.1
1,635,950 - ABIE41_RS07965 0.21 +0.6
1,635,950 - ABIE41_RS07965 0.21 +0.6
1,635,950 - ABIE41_RS07965 0.21 -0.5
1,635,950 - ABIE41_RS07965 0.21 -1.0
1,635,950 - ABIE41_RS07965 0.21 +1.0
1,635,950 - ABIE41_RS07965 0.21 -3.0
1,635,950 - ABIE41_RS07965 0.21 -1.4
1,635,950 - ABIE41_RS07965 0.21 -0.0
1,635,950 - ABIE41_RS07965 0.21 -0.2
1,635,950 - ABIE41_RS07965 0.21 -0.5
1,635,950 - ABIE41_RS07965 0.21 +1.0
1,636,108 + ABIE41_RS07965 0.35 +1.6
1,636,108 + ABIE41_RS07965 0.35 +0.2
1,636,109 - ABIE41_RS07965 0.35 +0.9
1,636,196 + ABIE41_RS07965 0.42 +0.3
1,636,196 + ABIE41_RS07965 0.42 +1.5
1,636,196 + ABIE41_RS07965 0.42 +0.9
1,636,197 - ABIE41_RS07965 0.42 -1.1
1,636,197 - ABIE41_RS07965 0.42 -0.3
1,636,197 - ABIE41_RS07965 0.42 -0.6
1,636,197 - ABIE41_RS07965 0.42 +1.3
1,636,197 - ABIE41_RS07965 0.42 -0.6
1,636,198 + ABIE41_RS07965 0.42 -0.1
1,636,198 + ABIE41_RS07965 0.42 +0.5
1,636,198 + ABIE41_RS07965 0.42 +0.3
1,636,198 + ABIE41_RS07965 0.42 -0.1
1,636,198 + ABIE41_RS07965 0.42 -0.1
1,636,198 + ABIE41_RS07965 0.42 +0.1
1,636,199 - ABIE41_RS07965 0.42 -1.0
1,636,199 - ABIE41_RS07965 0.42 -0.3
1,636,199 - ABIE41_RS07965 0.42 +0.3
1,636,199 - ABIE41_RS07965 0.42 +0.6
1,636,240 + ABIE41_RS07965 0.46 +0.0
1,636,240 + ABIE41_RS07965 0.46 +0.3
1,636,240 + ABIE41_RS07965 0.46 -1.8
1,636,240 + ABIE41_RS07965 0.46 +0.3
1,636,240 + ABIE41_RS07965 0.46 -0.4
1,636,241 - ABIE41_RS07965 0.46 +1.0
1,636,807 - -0.8
1,636,858 + +0.2
1,636,858 + -0.3
1,636,858 + -0.0
1,636,958 + +0.1
1,636,958 + +0.4
1,636,958 + -0.5
1,636,958 + +2.4
1,636,958 + -0.6
1,636,959 - -0.0
1,636,959 - +1.0
1,636,959 - -0.0
1,636,959 - +0.8
1,637,213 + ABIE41_RS07970 0.24 +0.8
1,637,214 - ABIE41_RS07970 0.24 -0.4
1,637,498 + ABIE41_RS07970 0.49 +0.3
1,637,498 + ABIE41_RS07970 0.49 -0.3
1,637,499 - ABIE41_RS07970 0.49 +0.3
1,637,562 - ABIE41_RS07970 0.54 -1.0
1,637,643 - ABIE41_RS07970 0.61 +0.0
1,637,643 - ABIE41_RS07970 0.61 +2.3
1,637,708 + ABIE41_RS07970 0.66 -0.1
1,637,708 + ABIE41_RS07970 0.66 +1.4
1,637,708 + ABIE41_RS07970 0.66 +1.2
1,637,708 + ABIE41_RS07970 0.66 +0.6
1,637,708 + ABIE41_RS07970 0.66 -0.0
1,637,709 - ABIE41_RS07970 0.67 +0.1
1,637,709 - ABIE41_RS07970 0.67 -0.2
1,637,709 - ABIE41_RS07970 0.67 -0.2
1,637,709 - ABIE41_RS07970 0.67 -0.9
1,637,709 - ABIE41_RS07970 0.67 +1.7
1,638,069 + -0.6
1,638,070 - -0.1
1,638,070 - +1.3
1,638,517 + ABIE41_RS07975 0.31 -0.6
1,638,517 + ABIE41_RS07975 0.31 +0.8
1,638,517 + ABIE41_RS07975 0.31 -1.0
1,638,517 + ABIE41_RS07975 0.31 +0.5
1,638,517 + ABIE41_RS07975 0.31 +0.5
1,638,517 + ABIE41_RS07975 0.31 -0.2
1,638,517 + ABIE41_RS07975 0.31 -0.4
1,638,517 + ABIE41_RS07975 0.31 -1.5
1,638,517 + ABIE41_RS07975 0.31 +2.0
1,638,518 - ABIE41_RS07975 0.31 -1.4
1,638,518 - ABIE41_RS07975 0.31 +0.3
1,638,518 - ABIE41_RS07975 0.31 -0.3
1,638,518 - ABIE41_RS07975 0.31 +0.2
1,638,518 - ABIE41_RS07975 0.31 +0.4
1,638,518 - ABIE41_RS07975 0.31 -1.8
1,638,832 + ABIE41_RS07975 0.66 -0.6
1,638,832 + ABIE41_RS07975 0.66 -0.1
1,638,833 - ABIE41_RS07975 0.66 -0.1
1,638,833 - ABIE41_RS07975 0.66 -0.0
1,638,833 - ABIE41_RS07975 0.66 +0.1
1,638,833 - ABIE41_RS07975 0.66 -0.8
1,638,922 + ABIE41_RS07975 0.76 -0.6
1,638,922 + ABIE41_RS07975 0.76 -0.7
1,638,922 + ABIE41_RS07975 0.76 -0.9
1,638,922 + ABIE41_RS07975 0.76 -0.7
1,638,922 + ABIE41_RS07975 0.76 +0.7
1,638,923 - ABIE41_RS07975 0.76 +1.6
1,638,923 - ABIE41_RS07975 0.76 +0.2
1,638,923 - ABIE41_RS07975 0.76 +0.9
1,638,923 - ABIE41_RS07975 0.76 +0.5
1,638,923 - ABIE41_RS07975 0.76 +0.3

Or see this region's nucleotide sequence