Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06245

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06235 and ABIE41_RS06240 overlap by 4 nucleotidesABIE41_RS06240 and ABIE41_RS06245 are separated by 2 nucleotidesABIE41_RS06245 and ABIE41_RS06250 are separated by 232 nucleotides ABIE41_RS06235: ABIE41_RS06235 - nitrate ABC transporter permease, at 1,286,558 to 1,287,403 _RS06235 ABIE41_RS06240: ABIE41_RS06240 - nuclear transport factor 2 family protein, at 1,287,400 to 1,287,885 _RS06240 ABIE41_RS06245: ABIE41_RS06245 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,287,888 to 1,289,264 _RS06245 ABIE41_RS06250: ABIE41_RS06250 - sigma 54-interacting transcriptional regulator, at 1,289,497 to 1,291,365 _RS06250 Position (kb) 1287 1288 1289 1290Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1286.967 kb on + strand, within ABIE41_RS06235at 1286.967 kb on + strand, within ABIE41_RS06235at 1286.967 kb on + strand, within ABIE41_RS06235at 1286.968 kb on - strand, within ABIE41_RS06235at 1286.968 kb on - strand, within ABIE41_RS06235at 1287.102 kb on + strand, within ABIE41_RS06235at 1287.103 kb on - strand, within ABIE41_RS06235at 1287.103 kb on - strand, within ABIE41_RS06235at 1287.103 kb on - strand, within ABIE41_RS06235at 1287.129 kb on + strand, within ABIE41_RS06235at 1287.130 kb on - strand, within ABIE41_RS06235at 1287.130 kb on - strand, within ABIE41_RS06235at 1287.174 kb on + strand, within ABIE41_RS06235at 1287.175 kb on - strand, within ABIE41_RS06235at 1287.175 kb on - strand, within ABIE41_RS06235at 1287.276 kb on + strand, within ABIE41_RS06235at 1287.276 kb on + strand, within ABIE41_RS06235at 1287.277 kb on - strand, within ABIE41_RS06235at 1287.552 kb on + strand, within ABIE41_RS06240at 1287.552 kb on + strand, within ABIE41_RS06240at 1287.552 kb on + strand, within ABIE41_RS06240at 1287.596 kb on + strand, within ABIE41_RS06240at 1287.596 kb on + strand, within ABIE41_RS06240at 1287.596 kb on + strand, within ABIE41_RS06240at 1287.596 kb on + strand, within ABIE41_RS06240at 1287.597 kb on - strand, within ABIE41_RS06240at 1287.597 kb on - strand, within ABIE41_RS06240at 1287.597 kb on - strand, within ABIE41_RS06240at 1287.597 kb on - strand, within ABIE41_RS06240at 1287.597 kb on - strand, within ABIE41_RS06240at 1287.656 kb on + strand, within ABIE41_RS06240at 1287.656 kb on + strand, within ABIE41_RS06240at 1287.755 kb on + strand, within ABIE41_RS06240at 1287.755 kb on + strand, within ABIE41_RS06240at 1287.755 kb on + strand, within ABIE41_RS06240at 1287.756 kb on - strand, within ABIE41_RS06240at 1287.919 kb on + strandat 1287.919 kb on + strandat 1287.919 kb on + strandat 1287.919 kb on + strandat 1287.919 kb on + strandat 1287.919 kb on + strandat 1287.919 kb on + strandat 1287.919 kb on + strandat 1287.920 kb on - strandat 1287.920 kb on - strandat 1287.920 kb on - strandat 1287.920 kb on - strandat 1287.920 kb on - strandat 1287.920 kb on - strandat 1287.942 kb on + strandat 1288.077 kb on + strand, within ABIE41_RS06245at 1288.077 kb on + strand, within ABIE41_RS06245at 1288.077 kb on + strand, within ABIE41_RS06245at 1288.078 kb on - strand, within ABIE41_RS06245at 1288.078 kb on - strand, within ABIE41_RS06245at 1288.078 kb on - strand, within ABIE41_RS06245at 1288.078 kb on - strand, within ABIE41_RS06245at 1288.078 kb on - strand, within ABIE41_RS06245at 1288.078 kb on - strand, within ABIE41_RS06245at 1288.078 kb on - strand, within ABIE41_RS06245at 1288.192 kb on + strand, within ABIE41_RS06245at 1288.192 kb on + strand, within ABIE41_RS06245at 1288.192 kb on + strand, within ABIE41_RS06245at 1288.192 kb on + strand, within ABIE41_RS06245at 1288.192 kb on + strand, within ABIE41_RS06245at 1288.192 kb on + strand, within ABIE41_RS06245at 1288.192 kb on + strand, within ABIE41_RS06245at 1288.192 kb on + strand, within ABIE41_RS06245at 1288.193 kb on - strand, within ABIE41_RS06245at 1288.240 kb on + strand, within ABIE41_RS06245at 1288.240 kb on + strand, within ABIE41_RS06245at 1288.241 kb on - strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.336 kb on + strand, within ABIE41_RS06245at 1288.337 kb on - strand, within ABIE41_RS06245at 1288.337 kb on - strand, within ABIE41_RS06245at 1288.337 kb on - strand, within ABIE41_RS06245at 1288.337 kb on - strand, within ABIE41_RS06245at 1288.337 kb on - strand, within ABIE41_RS06245at 1288.337 kb on - strand, within ABIE41_RS06245at 1288.337 kb on - strand, within ABIE41_RS06245at 1288.582 kb on + strand, within ABIE41_RS06245at 1288.582 kb on + strand, within ABIE41_RS06245at 1288.582 kb on + strand, within ABIE41_RS06245at 1288.582 kb on + strand, within ABIE41_RS06245at 1288.582 kb on + strand, within ABIE41_RS06245at 1288.582 kb on + strand, within ABIE41_RS06245at 1288.583 kb on - strand, within ABIE41_RS06245at 1288.583 kb on - strand, within ABIE41_RS06245at 1288.597 kb on + strand, within ABIE41_RS06245at 1288.597 kb on + strand, within ABIE41_RS06245at 1288.597 kb on + strand, within ABIE41_RS06245at 1288.598 kb on - strand, within ABIE41_RS06245at 1288.598 kb on - strand, within ABIE41_RS06245at 1288.598 kb on - strand, within ABIE41_RS06245at 1288.598 kb on - strand, within ABIE41_RS06245at 1288.612 kb on + strand, within ABIE41_RS06245at 1288.613 kb on - strand, within ABIE41_RS06245at 1288.729 kb on + strand, within ABIE41_RS06245at 1288.730 kb on - strand, within ABIE41_RS06245at 1288.730 kb on - strand, within ABIE41_RS06245at 1288.730 kb on - strand, within ABIE41_RS06245at 1288.801 kb on + strand, within ABIE41_RS06245at 1288.801 kb on + strand, within ABIE41_RS06245at 1288.801 kb on + strand, within ABIE41_RS06245at 1288.802 kb on - strand, within ABIE41_RS06245at 1288.802 kb on - strand, within ABIE41_RS06245at 1288.802 kb on - strand, within ABIE41_RS06245at 1288.802 kb on - strand, within ABIE41_RS06245at 1288.882 kb on + strand, within ABIE41_RS06245at 1288.882 kb on + strand, within ABIE41_RS06245at 1288.883 kb on - strand, within ABIE41_RS06245at 1288.883 kb on - strand, within ABIE41_RS06245at 1289.145 kb on + strandat 1289.145 kb on + strandat 1289.145 kb on + strandat 1289.145 kb on + strandat 1289.145 kb on + strandat 1289.146 kb on - strandat 1289.146 kb on - strandat 1289.146 kb on - strandat 1289.146 kb on - strandat 1289.146 kb on - strandat 1289.146 kb on - strandat 1289.146 kb on - strandat 1289.146 kb on - strandat 1289.146 kb on - strandat 1289.315 kb on + strandat 1289.316 kb on - strandat 1289.670 kb on + strandat 1289.671 kb on - strandat 1289.671 kb on - strandat 1289.791 kb on + strand, within ABIE41_RS06250at 1289.791 kb on + strand, within ABIE41_RS06250at 1289.792 kb on - strand, within ABIE41_RS06250at 1289.792 kb on - strand, within ABIE41_RS06250at 1289.792 kb on - strand, within ABIE41_RS06250at 1289.792 kb on - strand, within ABIE41_RS06250at 1289.792 kb on - strand, within ABIE41_RS06250at 1289.792 kb on - strand, within ABIE41_RS06250at 1289.792 kb on - strand, within ABIE41_RS06250at 1289.792 kb on - strand, within ABIE41_RS06250at 1289.792 kb on - strand, within ABIE41_RS06250at 1289.946 kb on - strand, within ABIE41_RS06250at 1290.002 kb on + strand, within ABIE41_RS06250at 1290.002 kb on + strand, within ABIE41_RS06250at 1290.002 kb on + strand, within ABIE41_RS06250at 1290.002 kb on + strand, within ABIE41_RS06250at 1290.002 kb on + strand, within ABIE41_RS06250at 1290.002 kb on + strand, within ABIE41_RS06250at 1290.002 kb on + strand, within ABIE41_RS06250at 1290.002 kb on + strand, within ABIE41_RS06250at 1290.002 kb on + strand, within ABIE41_RS06250at 1290.002 kb on + strand, within ABIE41_RS06250at 1290.003 kb on - strand, within ABIE41_RS06250at 1290.003 kb on - strand, within ABIE41_RS06250at 1290.003 kb on - strand, within ABIE41_RS06250at 1290.003 kb on - strand, within ABIE41_RS06250at 1290.003 kb on - strand, within ABIE41_RS06250at 1290.003 kb on - strand, within ABIE41_RS06250at 1290.003 kb on - strand, within ABIE41_RS06250at 1290.003 kb on - strand, within ABIE41_RS06250at 1290.003 kb on - strand, within ABIE41_RS06250at 1290.003 kb on - strand, within ABIE41_RS06250at 1290.003 kb on - strand, within ABIE41_RS06250at 1290.023 kb on + strand, within ABIE41_RS06250at 1290.023 kb on + strand, within ABIE41_RS06250at 1290.024 kb on - strand, within ABIE41_RS06250at 1290.079 kb on + strand, within ABIE41_RS06250at 1290.080 kb on - strand, within ABIE41_RS06250at 1290.080 kb on - strand, within ABIE41_RS06250at 1290.080 kb on - strand, within ABIE41_RS06250at 1290.103 kb on + strand, within ABIE41_RS06250at 1290.103 kb on + strand, within ABIE41_RS06250at 1290.187 kb on + strand, within ABIE41_RS06250at 1290.187 kb on + strand, within ABIE41_RS06250at 1290.187 kb on + strand, within ABIE41_RS06250at 1290.188 kb on - strand, within ABIE41_RS06250at 1290.188 kb on - strand, within ABIE41_RS06250at 1290.188 kb on - strand, within ABIE41_RS06250at 1290.188 kb on - strand, within ABIE41_RS06250at 1290.188 kb on - strand, within ABIE41_RS06250at 1290.188 kb on - strand, within ABIE41_RS06250at 1290.188 kb on - strand, within ABIE41_RS06250at 1290.188 kb on - strand, within ABIE41_RS06250at 1290.188 kb on - strand, within ABIE41_RS06250at 1290.188 kb on - strand, within ABIE41_RS06250

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,286,967 + ABIE41_RS06235 0.48 -2.3
1,286,967 + ABIE41_RS06235 0.48 +1.5
1,286,967 + ABIE41_RS06235 0.48 +0.6
1,286,968 - ABIE41_RS06235 0.48 +0.6
1,286,968 - ABIE41_RS06235 0.48 -0.7
1,287,102 + ABIE41_RS06235 0.64 -0.5
1,287,103 - ABIE41_RS06235 0.64 +0.2
1,287,103 - ABIE41_RS06235 0.64 -0.3
1,287,103 - ABIE41_RS06235 0.64 -0.1
1,287,129 + ABIE41_RS06235 0.67 +0.6
1,287,130 - ABIE41_RS06235 0.68 +0.0
1,287,130 - ABIE41_RS06235 0.68 +0.8
1,287,174 + ABIE41_RS06235 0.73 +0.4
1,287,175 - ABIE41_RS06235 0.73 -0.3
1,287,175 - ABIE41_RS06235 0.73 +0.3
1,287,276 + ABIE41_RS06235 0.85 -0.5
1,287,276 + ABIE41_RS06235 0.85 +0.3
1,287,277 - ABIE41_RS06235 0.85 -0.0
1,287,552 + ABIE41_RS06240 0.31 -0.5
1,287,552 + ABIE41_RS06240 0.31 +1.2
1,287,552 + ABIE41_RS06240 0.31 -0.3
1,287,596 + ABIE41_RS06240 0.40 -1.7
1,287,596 + ABIE41_RS06240 0.40 +1.2
1,287,596 + ABIE41_RS06240 0.40 -0.2
1,287,596 + ABIE41_RS06240 0.40 -2.3
1,287,597 - ABIE41_RS06240 0.41 +1.4
1,287,597 - ABIE41_RS06240 0.41 +0.2
1,287,597 - ABIE41_RS06240 0.41 +0.2
1,287,597 - ABIE41_RS06240 0.41 -0.7
1,287,597 - ABIE41_RS06240 0.41 -0.1
1,287,656 + ABIE41_RS06240 0.53 +0.2
1,287,656 + ABIE41_RS06240 0.53 -0.1
1,287,755 + ABIE41_RS06240 0.73 +2.4
1,287,755 + ABIE41_RS06240 0.73 +1.9
1,287,755 + ABIE41_RS06240 0.73 +0.9
1,287,756 - ABIE41_RS06240 0.73 +0.1
1,287,919 + +0.3
1,287,919 + -0.3
1,287,919 + -0.1
1,287,919 + -0.1
1,287,919 + +0.4
1,287,919 + +0.2
1,287,919 + +0.2
1,287,919 + -0.6
1,287,920 - -0.3
1,287,920 - -0.4
1,287,920 - -0.0
1,287,920 - -0.8
1,287,920 - +1.0
1,287,920 - +1.2
1,287,942 + +0.2
1,288,077 + ABIE41_RS06245 0.14 -0.4
1,288,077 + ABIE41_RS06245 0.14 -0.8
1,288,077 + ABIE41_RS06245 0.14 -0.4
1,288,078 - ABIE41_RS06245 0.14 -1.4
1,288,078 - ABIE41_RS06245 0.14 -1.1
1,288,078 - ABIE41_RS06245 0.14 -0.5
1,288,078 - ABIE41_RS06245 0.14 -0.7
1,288,078 - ABIE41_RS06245 0.14 -1.8
1,288,078 - ABIE41_RS06245 0.14 +0.1
1,288,078 - ABIE41_RS06245 0.14 -0.3
1,288,192 + ABIE41_RS06245 0.22 +0.8
1,288,192 + ABIE41_RS06245 0.22 -0.3
1,288,192 + ABIE41_RS06245 0.22 -0.1
1,288,192 + ABIE41_RS06245 0.22 +0.0
1,288,192 + ABIE41_RS06245 0.22 -0.2
1,288,192 + ABIE41_RS06245 0.22 +0.2
1,288,192 + ABIE41_RS06245 0.22 -0.0
1,288,192 + ABIE41_RS06245 0.22 -0.2
1,288,193 - ABIE41_RS06245 0.22 -0.5
1,288,240 + ABIE41_RS06245 0.26 -0.4
1,288,240 + ABIE41_RS06245 0.26 +0.3
1,288,241 - ABIE41_RS06245 0.26 +0.9
1,288,336 + ABIE41_RS06245 0.33 -2.0
1,288,336 + ABIE41_RS06245 0.33 -0.7
1,288,336 + ABIE41_RS06245 0.33 -0.7
1,288,336 + ABIE41_RS06245 0.33 +0.9
1,288,336 + ABIE41_RS06245 0.33 -0.6
1,288,336 + ABIE41_RS06245 0.33 -0.1
1,288,336 + ABIE41_RS06245 0.33 +0.4
1,288,336 + ABIE41_RS06245 0.33 -0.2
1,288,336 + ABIE41_RS06245 0.33 +0.3
1,288,336 + ABIE41_RS06245 0.33 +0.8
1,288,336 + ABIE41_RS06245 0.33 -0.1
1,288,336 + ABIE41_RS06245 0.33 -0.3
1,288,337 - ABIE41_RS06245 0.33 -0.2
1,288,337 - ABIE41_RS06245 0.33 -2.3
1,288,337 - ABIE41_RS06245 0.33 -1.0
1,288,337 - ABIE41_RS06245 0.33 -0.8
1,288,337 - ABIE41_RS06245 0.33 +3.6
1,288,337 - ABIE41_RS06245 0.33 -0.8
1,288,337 - ABIE41_RS06245 0.33 -0.4
1,288,582 + ABIE41_RS06245 0.50 -0.7
1,288,582 + ABIE41_RS06245 0.50 -0.3
1,288,582 + ABIE41_RS06245 0.50 +0.0
1,288,582 + ABIE41_RS06245 0.50 -0.4
1,288,582 + ABIE41_RS06245 0.50 -1.0
1,288,582 + ABIE41_RS06245 0.50 +0.5
1,288,583 - ABIE41_RS06245 0.50 -0.1
1,288,583 - ABIE41_RS06245 0.50 +0.1
1,288,597 + ABIE41_RS06245 0.51 -0.0
1,288,597 + ABIE41_RS06245 0.51 -0.5
1,288,597 + ABIE41_RS06245 0.51 +0.2
1,288,598 - ABIE41_RS06245 0.52 -1.3
1,288,598 - ABIE41_RS06245 0.52 -0.2
1,288,598 - ABIE41_RS06245 0.52 -0.0
1,288,598 - ABIE41_RS06245 0.52 -1.1
1,288,612 + ABIE41_RS06245 0.53 -1.0
1,288,613 - ABIE41_RS06245 0.53 +0.6
1,288,729 + ABIE41_RS06245 0.61 +0.7
1,288,730 - ABIE41_RS06245 0.61 +0.5
1,288,730 - ABIE41_RS06245 0.61 -0.7
1,288,730 - ABIE41_RS06245 0.61 -0.3
1,288,801 + ABIE41_RS06245 0.66 -0.8
1,288,801 + ABIE41_RS06245 0.66 +0.9
1,288,801 + ABIE41_RS06245 0.66 -1.6
1,288,802 - ABIE41_RS06245 0.66 +0.2
1,288,802 - ABIE41_RS06245 0.66 +1.1
1,288,802 - ABIE41_RS06245 0.66 -1.9
1,288,802 - ABIE41_RS06245 0.66 +0.7
1,288,882 + ABIE41_RS06245 0.72 +0.1
1,288,882 + ABIE41_RS06245 0.72 +0.2
1,288,883 - ABIE41_RS06245 0.72 -0.3
1,288,883 - ABIE41_RS06245 0.72 +1.0
1,289,145 + -0.1
1,289,145 + +1.4
1,289,145 + -1.1
1,289,145 + +0.2
1,289,145 + +0.3
1,289,146 - +0.3
1,289,146 - -0.0
1,289,146 - +1.1
1,289,146 - +1.3
1,289,146 - +0.8
1,289,146 - +1.0
1,289,146 - +0.4
1,289,146 - -0.3
1,289,146 - -0.4
1,289,315 + -0.1
1,289,316 - +1.0
1,289,670 + +0.4
1,289,671 - -0.0
1,289,671 - +0.0
1,289,791 + ABIE41_RS06250 0.16 -0.3
1,289,791 + ABIE41_RS06250 0.16 -0.2
1,289,792 - ABIE41_RS06250 0.16 -0.8
1,289,792 - ABIE41_RS06250 0.16 -0.4
1,289,792 - ABIE41_RS06250 0.16 -0.2
1,289,792 - ABIE41_RS06250 0.16 +0.6
1,289,792 - ABIE41_RS06250 0.16 -0.1
1,289,792 - ABIE41_RS06250 0.16 +0.4
1,289,792 - ABIE41_RS06250 0.16 +0.1
1,289,792 - ABIE41_RS06250 0.16 -0.1
1,289,792 - ABIE41_RS06250 0.16 -0.5
1,289,946 - ABIE41_RS06250 0.24 +1.2
1,290,002 + ABIE41_RS06250 0.27 -2.9
1,290,002 + ABIE41_RS06250 0.27 +0.1
1,290,002 + ABIE41_RS06250 0.27 -0.9
1,290,002 + ABIE41_RS06250 0.27 +1.0
1,290,002 + ABIE41_RS06250 0.27 +1.0
1,290,002 + ABIE41_RS06250 0.27 +0.1
1,290,002 + ABIE41_RS06250 0.27 +0.6
1,290,002 + ABIE41_RS06250 0.27 -1.4
1,290,002 + ABIE41_RS06250 0.27 +0.3
1,290,002 + ABIE41_RS06250 0.27 +2.3
1,290,003 - ABIE41_RS06250 0.27 -0.4
1,290,003 - ABIE41_RS06250 0.27 -0.2
1,290,003 - ABIE41_RS06250 0.27 -0.5
1,290,003 - ABIE41_RS06250 0.27 +1.6
1,290,003 - ABIE41_RS06250 0.27 +0.0
1,290,003 - ABIE41_RS06250 0.27 +0.5
1,290,003 - ABIE41_RS06250 0.27 -0.1
1,290,003 - ABIE41_RS06250 0.27 -0.1
1,290,003 - ABIE41_RS06250 0.27 -0.4
1,290,003 - ABIE41_RS06250 0.27 -1.0
1,290,003 - ABIE41_RS06250 0.27 -1.3
1,290,023 + ABIE41_RS06250 0.28 +1.2
1,290,023 + ABIE41_RS06250 0.28 +0.0
1,290,024 - ABIE41_RS06250 0.28 -0.4
1,290,079 + ABIE41_RS06250 0.31 -0.2
1,290,080 - ABIE41_RS06250 0.31 -0.1
1,290,080 - ABIE41_RS06250 0.31 +0.1
1,290,080 - ABIE41_RS06250 0.31 +0.1
1,290,103 + ABIE41_RS06250 0.32 -0.8
1,290,103 + ABIE41_RS06250 0.32 +0.1
1,290,187 + ABIE41_RS06250 0.37 +0.1
1,290,187 + ABIE41_RS06250 0.37 -1.4
1,290,187 + ABIE41_RS06250 0.37 -0.9
1,290,188 - ABIE41_RS06250 0.37 -0.1
1,290,188 - ABIE41_RS06250 0.37 -0.2
1,290,188 - ABIE41_RS06250 0.37 -0.9
1,290,188 - ABIE41_RS06250 0.37 -0.3
1,290,188 - ABIE41_RS06250 0.37 +0.3
1,290,188 - ABIE41_RS06250 0.37 +0.1
1,290,188 - ABIE41_RS06250 0.37 +0.9
1,290,188 - ABIE41_RS06250 0.37 -0.2
1,290,188 - ABIE41_RS06250 0.37 +0.6
1,290,188 - ABIE41_RS06250 0.37 -2.7

Or see this region's nucleotide sequence