Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05475

Experiment: DMSO control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS05470 and ABIE41_RS05475 are separated by 48 nucleotidesABIE41_RS05475 and ABIE41_RS05480 are separated by 10 nucleotidesABIE41_RS05480 and ABIE41_RS05485 are separated by 55 nucleotidesABIE41_RS05485 and ABIE41_RS05490 are separated by 20 nucleotides ABIE41_RS05470: ABIE41_RS05470 - flagellar biosynthesis protein FlhA, at 1,130,046 to 1,132,157 _RS05470 ABIE41_RS05475: ABIE41_RS05475 - flagellar biosynthetic protein FliQ, at 1,132,206 to 1,132,472 _RS05475 ABIE41_RS05480: ABIE41_RS05480 - flagellar hook capping FlgD N-terminal domain-containing protein, at 1,132,483 to 1,132,752 _RS05480 ABIE41_RS05485: ABIE41_RS05485 - flagellar biosynthesis repressor FlbT, at 1,132,808 to 1,133,272 _RS05485 ABIE41_RS05490: ABIE41_RS05490 - flagellar biosynthesis regulator FlaF, at 1,133,293 to 1,133,640 _RS05490 Position (kb) 1132 1133Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1131.817 kb on + strand, within ABIE41_RS05470at 1131.817 kb on + strand, within ABIE41_RS05470at 1131.817 kb on + strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1132.231 kb on + strandat 1132.598 kb on + strand, within ABIE41_RS05480at 1132.598 kb on + strand, within ABIE41_RS05480at 1132.598 kb on + strand, within ABIE41_RS05480at 1132.598 kb on + strand, within ABIE41_RS05480at 1132.598 kb on + strand, within ABIE41_RS05480at 1132.599 kb on - strand, within ABIE41_RS05480at 1132.599 kb on - strand, within ABIE41_RS05480at 1132.599 kb on - strand, within ABIE41_RS05480at 1132.599 kb on - strand, within ABIE41_RS05480at 1132.673 kb on + strand, within ABIE41_RS05480at 1132.674 kb on - strand, within ABIE41_RS05480at 1132.803 kb on + strandat 1132.803 kb on + strandat 1132.873 kb on + strand, within ABIE41_RS05485at 1132.873 kb on + strand, within ABIE41_RS05485at 1132.874 kb on - strand, within ABIE41_RS05485at 1132.874 kb on - strand, within ABIE41_RS05485at 1132.923 kb on + strand, within ABIE41_RS05485at 1132.923 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485at 1133.238 kb on + strandat 1133.238 kb on + strandat 1133.238 kb on + strandat 1133.238 kb on + strandat 1133.238 kb on + strandat 1133.238 kb on + strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strandat 1133.239 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
remove
1,131,817 + ABIE41_RS05470 0.84 +1.6
1,131,817 + ABIE41_RS05470 0.84 +3.1
1,131,817 + ABIE41_RS05470 0.84 -1.3
1,131,818 - ABIE41_RS05470 0.84 +0.5
1,131,818 - ABIE41_RS05470 0.84 -0.1
1,131,818 - ABIE41_RS05470 0.84 +0.3
1,131,818 - ABIE41_RS05470 0.84 +0.2
1,131,818 - ABIE41_RS05470 0.84 -2.6
1,131,818 - ABIE41_RS05470 0.84 +0.1
1,132,231 + -0.4
1,132,598 + ABIE41_RS05480 0.43 +0.4
1,132,598 + ABIE41_RS05480 0.43 +0.7
1,132,598 + ABIE41_RS05480 0.43 -0.3
1,132,598 + ABIE41_RS05480 0.43 -0.3
1,132,598 + ABIE41_RS05480 0.43 -0.5
1,132,599 - ABIE41_RS05480 0.43 -0.7
1,132,599 - ABIE41_RS05480 0.43 +2.5
1,132,599 - ABIE41_RS05480 0.43 +0.2
1,132,599 - ABIE41_RS05480 0.43 +1.2
1,132,673 + ABIE41_RS05480 0.70 -0.2
1,132,674 - ABIE41_RS05480 0.71 +1.5
1,132,803 + -0.3
1,132,803 + +0.6
1,132,873 + ABIE41_RS05485 0.14 +0.3
1,132,873 + ABIE41_RS05485 0.14 -2.0
1,132,874 - ABIE41_RS05485 0.14 +0.0
1,132,874 - ABIE41_RS05485 0.14 +0.8
1,132,923 + ABIE41_RS05485 0.25 +0.0
1,132,923 + ABIE41_RS05485 0.25 -0.7
1,133,112 + ABIE41_RS05485 0.65 +1.5
1,133,112 + ABIE41_RS05485 0.65 +0.1
1,133,112 + ABIE41_RS05485 0.65 +0.5
1,133,112 + ABIE41_RS05485 0.65 +1.1
1,133,112 + ABIE41_RS05485 0.65 +1.4
1,133,113 - ABIE41_RS05485 0.66 -1.5
1,133,113 - ABIE41_RS05485 0.66 +2.3
1,133,113 - ABIE41_RS05485 0.66 +1.1
1,133,113 - ABIE41_RS05485 0.66 +1.4
1,133,238 + +0.0
1,133,238 + -0.9
1,133,238 + +0.5
1,133,238 + +0.7
1,133,238 + -0.3
1,133,238 + -1.4
1,133,239 - -0.6
1,133,239 - -0.1
1,133,239 - -0.1
1,133,239 - +0.1
1,133,239 - +0.9
1,133,239 - +0.4
1,133,239 - +0.6
1,133,239 - +0.2
1,133,239 - -0.8
1,133,239 - -0.3
1,133,239 - +1.3
1,133,239 - +0.2

Or see this region's nucleotide sequence