Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05470

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05460 and ABIE41_RS05465 are separated by 6 nucleotidesABIE41_RS05465 and ABIE41_RS05470 overlap by 4 nucleotidesABIE41_RS05470 and ABIE41_RS05475 are separated by 48 nucleotidesABIE41_RS05475 and ABIE41_RS05480 are separated by 10 nucleotidesABIE41_RS05480 and ABIE41_RS05485 are separated by 55 nucleotides ABIE41_RS05460: ABIE41_RS05460 - hypothetical protein, at 1,128,892 to 1,129,290 _RS05460 ABIE41_RS05465: ABIE41_RS05465 - flagellar biosynthesis protein FliR, at 1,129,297 to 1,130,049 _RS05465 ABIE41_RS05470: ABIE41_RS05470 - flagellar biosynthesis protein FlhA, at 1,130,046 to 1,132,157 _RS05470 ABIE41_RS05475: ABIE41_RS05475 - flagellar biosynthetic protein FliQ, at 1,132,206 to 1,132,472 _RS05475 ABIE41_RS05480: ABIE41_RS05480 - flagellar hook capping FlgD N-terminal domain-containing protein, at 1,132,483 to 1,132,752 _RS05480 ABIE41_RS05485: ABIE41_RS05485 - flagellar biosynthesis repressor FlbT, at 1,132,808 to 1,133,272 _RS05485 Position (kb) 1130 1131 1132 1133Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1129.364 kb on + strandat 1129.364 kb on + strandat 1129.364 kb on + strandat 1129.364 kb on + strandat 1129.365 kb on - strandat 1129.365 kb on - strandat 1129.413 kb on - strand, within ABIE41_RS05465at 1129.413 kb on - strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.475 kb on + strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.476 kb on - strand, within ABIE41_RS05465at 1129.592 kb on + strand, within ABIE41_RS05465at 1129.592 kb on + strand, within ABIE41_RS05465at 1129.593 kb on - strand, within ABIE41_RS05465at 1129.892 kb on + strand, within ABIE41_RS05465at 1129.892 kb on + strand, within ABIE41_RS05465at 1129.892 kb on + strand, within ABIE41_RS05465at 1129.892 kb on + strand, within ABIE41_RS05465at 1129.893 kb on - strand, within ABIE41_RS05465at 1129.893 kb on - strand, within ABIE41_RS05465at 1129.893 kb on - strand, within ABIE41_RS05465at 1129.893 kb on - strand, within ABIE41_RS05465at 1129.893 kb on - strand, within ABIE41_RS05465at 1129.893 kb on - strand, within ABIE41_RS05465at 1129.893 kb on - strand, within ABIE41_RS05465at 1129.893 kb on - strand, within ABIE41_RS05465at 1129.893 kb on - strand, within ABIE41_RS05465at 1129.893 kb on - strand, within ABIE41_RS05465at 1129.893 kb on - strand, within ABIE41_RS05465at 1130.002 kb on + strandat 1130.057 kb on + strandat 1130.058 kb on - strandat 1130.149 kb on + strandat 1130.149 kb on + strandat 1130.150 kb on - strandat 1130.150 kb on - strandat 1130.150 kb on - strandat 1130.150 kb on - strandat 1130.150 kb on - strandat 1130.150 kb on - strandat 1130.543 kb on + strand, within ABIE41_RS05470at 1130.543 kb on + strand, within ABIE41_RS05470at 1130.543 kb on + strand, within ABIE41_RS05470at 1130.543 kb on + strand, within ABIE41_RS05470at 1130.543 kb on + strand, within ABIE41_RS05470at 1130.544 kb on - strand, within ABIE41_RS05470at 1130.544 kb on - strand, within ABIE41_RS05470at 1130.544 kb on - strand, within ABIE41_RS05470at 1130.544 kb on - strand, within ABIE41_RS05470at 1130.544 kb on - strand, within ABIE41_RS05470at 1130.578 kb on + strand, within ABIE41_RS05470at 1130.578 kb on + strand, within ABIE41_RS05470at 1130.578 kb on + strand, within ABIE41_RS05470at 1130.578 kb on + strand, within ABIE41_RS05470at 1130.579 kb on - strand, within ABIE41_RS05470at 1130.579 kb on - strand, within ABIE41_RS05470at 1130.579 kb on - strand, within ABIE41_RS05470at 1130.579 kb on - strand, within ABIE41_RS05470at 1130.620 kb on + strand, within ABIE41_RS05470at 1130.620 kb on + strand, within ABIE41_RS05470at 1130.620 kb on + strand, within ABIE41_RS05470at 1130.621 kb on - strand, within ABIE41_RS05470at 1130.621 kb on - strand, within ABIE41_RS05470at 1130.621 kb on - strand, within ABIE41_RS05470at 1130.621 kb on - strand, within ABIE41_RS05470at 1130.621 kb on - strand, within ABIE41_RS05470at 1130.621 kb on - strand, within ABIE41_RS05470at 1130.621 kb on - strand, within ABIE41_RS05470at 1130.621 kb on - strand, within ABIE41_RS05470at 1130.729 kb on - strand, within ABIE41_RS05470at 1130.729 kb on - strand, within ABIE41_RS05470at 1130.729 kb on - strand, within ABIE41_RS05470at 1130.944 kb on + strand, within ABIE41_RS05470at 1130.944 kb on + strand, within ABIE41_RS05470at 1130.944 kb on + strand, within ABIE41_RS05470at 1130.944 kb on + strand, within ABIE41_RS05470at 1130.944 kb on + strand, within ABIE41_RS05470at 1130.944 kb on + strand, within ABIE41_RS05470at 1130.945 kb on - strand, within ABIE41_RS05470at 1130.945 kb on - strand, within ABIE41_RS05470at 1131.817 kb on + strand, within ABIE41_RS05470at 1131.817 kb on + strand, within ABIE41_RS05470at 1131.817 kb on + strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1131.818 kb on - strand, within ABIE41_RS05470at 1132.231 kb on + strandat 1132.598 kb on + strand, within ABIE41_RS05480at 1132.598 kb on + strand, within ABIE41_RS05480at 1132.598 kb on + strand, within ABIE41_RS05480at 1132.598 kb on + strand, within ABIE41_RS05480at 1132.598 kb on + strand, within ABIE41_RS05480at 1132.599 kb on - strand, within ABIE41_RS05480at 1132.599 kb on - strand, within ABIE41_RS05480at 1132.599 kb on - strand, within ABIE41_RS05480at 1132.599 kb on - strand, within ABIE41_RS05480at 1132.673 kb on + strand, within ABIE41_RS05480at 1132.674 kb on - strand, within ABIE41_RS05480at 1132.803 kb on + strandat 1132.803 kb on + strandat 1132.873 kb on + strand, within ABIE41_RS05485at 1132.873 kb on + strand, within ABIE41_RS05485at 1132.874 kb on - strand, within ABIE41_RS05485at 1132.874 kb on - strand, within ABIE41_RS05485at 1132.923 kb on + strand, within ABIE41_RS05485at 1132.923 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.112 kb on + strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485at 1133.113 kb on - strand, within ABIE41_RS05485

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,129,364 + -0.7
1,129,364 + -0.1
1,129,364 + +0.1
1,129,364 + -0.0
1,129,365 - -0.6
1,129,365 - +0.8
1,129,413 - ABIE41_RS05465 0.15 -0.3
1,129,413 - ABIE41_RS05465 0.15 +0.1
1,129,475 + ABIE41_RS05465 0.24 -0.3
1,129,475 + ABIE41_RS05465 0.24 +0.5
1,129,475 + ABIE41_RS05465 0.24 +0.3
1,129,475 + ABIE41_RS05465 0.24 -0.9
1,129,475 + ABIE41_RS05465 0.24 -1.3
1,129,475 + ABIE41_RS05465 0.24 +0.1
1,129,475 + ABIE41_RS05465 0.24 -0.3
1,129,475 + ABIE41_RS05465 0.24 +3.6
1,129,476 - ABIE41_RS05465 0.24 +1.5
1,129,476 - ABIE41_RS05465 0.24 +0.3
1,129,476 - ABIE41_RS05465 0.24 +1.6
1,129,476 - ABIE41_RS05465 0.24 -0.3
1,129,476 - ABIE41_RS05465 0.24 -2.0
1,129,476 - ABIE41_RS05465 0.24 +2.1
1,129,592 + ABIE41_RS05465 0.39 -1.1
1,129,592 + ABIE41_RS05465 0.39 -1.2
1,129,593 - ABIE41_RS05465 0.39 +0.2
1,129,892 + ABIE41_RS05465 0.79 -0.0
1,129,892 + ABIE41_RS05465 0.79 +0.8
1,129,892 + ABIE41_RS05465 0.79 +0.5
1,129,892 + ABIE41_RS05465 0.79 +0.9
1,129,893 - ABIE41_RS05465 0.79 -0.4
1,129,893 - ABIE41_RS05465 0.79 -0.5
1,129,893 - ABIE41_RS05465 0.79 -0.5
1,129,893 - ABIE41_RS05465 0.79 +0.1
1,129,893 - ABIE41_RS05465 0.79 +0.8
1,129,893 - ABIE41_RS05465 0.79 -0.5
1,129,893 - ABIE41_RS05465 0.79 +2.2
1,129,893 - ABIE41_RS05465 0.79 -0.1
1,129,893 - ABIE41_RS05465 0.79 +2.1
1,129,893 - ABIE41_RS05465 0.79 -0.3
1,129,893 - ABIE41_RS05465 0.79 +0.2
1,130,002 + +2.2
1,130,057 + +1.1
1,130,058 - +0.8
1,130,149 + +0.3
1,130,149 + -0.8
1,130,150 - -0.3
1,130,150 - -1.7
1,130,150 - +0.0
1,130,150 - +1.2
1,130,150 - +0.8
1,130,150 - +0.7
1,130,543 + ABIE41_RS05470 0.24 +0.8
1,130,543 + ABIE41_RS05470 0.24 -0.1
1,130,543 + ABIE41_RS05470 0.24 -0.3
1,130,543 + ABIE41_RS05470 0.24 -1.1
1,130,543 + ABIE41_RS05470 0.24 +0.1
1,130,544 - ABIE41_RS05470 0.24 +0.1
1,130,544 - ABIE41_RS05470 0.24 +1.2
1,130,544 - ABIE41_RS05470 0.24 -1.3
1,130,544 - ABIE41_RS05470 0.24 +0.5
1,130,544 - ABIE41_RS05470 0.24 +0.0
1,130,578 + ABIE41_RS05470 0.25 -0.1
1,130,578 + ABIE41_RS05470 0.25 -1.1
1,130,578 + ABIE41_RS05470 0.25 -0.8
1,130,578 + ABIE41_RS05470 0.25 -0.2
1,130,579 - ABIE41_RS05470 0.25 -0.3
1,130,579 - ABIE41_RS05470 0.25 -0.9
1,130,579 - ABIE41_RS05470 0.25 +0.3
1,130,579 - ABIE41_RS05470 0.25 -0.9
1,130,620 + ABIE41_RS05470 0.27 -1.1
1,130,620 + ABIE41_RS05470 0.27 +1.6
1,130,620 + ABIE41_RS05470 0.27 -0.2
1,130,621 - ABIE41_RS05470 0.27 +0.5
1,130,621 - ABIE41_RS05470 0.27 +0.5
1,130,621 - ABIE41_RS05470 0.27 +0.1
1,130,621 - ABIE41_RS05470 0.27 -0.1
1,130,621 - ABIE41_RS05470 0.27 -0.5
1,130,621 - ABIE41_RS05470 0.27 -0.3
1,130,621 - ABIE41_RS05470 0.27 +0.3
1,130,621 - ABIE41_RS05470 0.27 -1.9
1,130,729 - ABIE41_RS05470 0.32 +0.1
1,130,729 - ABIE41_RS05470 0.32 +0.3
1,130,729 - ABIE41_RS05470 0.32 -0.5
1,130,944 + ABIE41_RS05470 0.43 -0.3
1,130,944 + ABIE41_RS05470 0.43 -0.4
1,130,944 + ABIE41_RS05470 0.43 -3.0
1,130,944 + ABIE41_RS05470 0.43 -1.0
1,130,944 + ABIE41_RS05470 0.43 +1.2
1,130,944 + ABIE41_RS05470 0.43 -0.0
1,130,945 - ABIE41_RS05470 0.43 -0.8
1,130,945 - ABIE41_RS05470 0.43 -0.1
1,131,817 + ABIE41_RS05470 0.84 +1.6
1,131,817 + ABIE41_RS05470 0.84 +3.1
1,131,817 + ABIE41_RS05470 0.84 -1.3
1,131,818 - ABIE41_RS05470 0.84 +0.5
1,131,818 - ABIE41_RS05470 0.84 -0.1
1,131,818 - ABIE41_RS05470 0.84 +0.3
1,131,818 - ABIE41_RS05470 0.84 +0.2
1,131,818 - ABIE41_RS05470 0.84 -2.6
1,131,818 - ABIE41_RS05470 0.84 +0.1
1,132,231 + -0.4
1,132,598 + ABIE41_RS05480 0.43 +0.4
1,132,598 + ABIE41_RS05480 0.43 +0.7
1,132,598 + ABIE41_RS05480 0.43 -0.3
1,132,598 + ABIE41_RS05480 0.43 -0.3
1,132,598 + ABIE41_RS05480 0.43 -0.5
1,132,599 - ABIE41_RS05480 0.43 -0.7
1,132,599 - ABIE41_RS05480 0.43 +2.5
1,132,599 - ABIE41_RS05480 0.43 +0.2
1,132,599 - ABIE41_RS05480 0.43 +1.2
1,132,673 + ABIE41_RS05480 0.70 -0.2
1,132,674 - ABIE41_RS05480 0.71 +1.5
1,132,803 + -0.3
1,132,803 + +0.6
1,132,873 + ABIE41_RS05485 0.14 +0.3
1,132,873 + ABIE41_RS05485 0.14 -2.0
1,132,874 - ABIE41_RS05485 0.14 +0.0
1,132,874 - ABIE41_RS05485 0.14 +0.8
1,132,923 + ABIE41_RS05485 0.25 +0.0
1,132,923 + ABIE41_RS05485 0.25 -0.7
1,133,112 + ABIE41_RS05485 0.65 +1.5
1,133,112 + ABIE41_RS05485 0.65 +0.1
1,133,112 + ABIE41_RS05485 0.65 +0.5
1,133,112 + ABIE41_RS05485 0.65 +1.1
1,133,112 + ABIE41_RS05485 0.65 +1.4
1,133,113 - ABIE41_RS05485 0.66 -1.5
1,133,113 - ABIE41_RS05485 0.66 +2.3
1,133,113 - ABIE41_RS05485 0.66 +1.1
1,133,113 - ABIE41_RS05485 0.66 +1.4

Or see this region's nucleotide sequence