Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS05220 and ABIE41_RS05225 are separated by 67 nucleotides ABIE41_RS05225 and ABIE41_RS05230 are separated by 126 nucleotides ABIE41_RS05230 and ABIE41_RS05235 are separated by 112 nucleotides
ABIE41_RS05220: ABIE41_RS05220 - ABC transporter ATP-binding protein, at 1,080,282 to 1,082,102
_RS05220
ABIE41_RS05225: ABIE41_RS05225 - phosphoribosyl-ATP diphosphatase, at 1,082,170 to 1,082,544
_RS05225
ABIE41_RS05230: ABIE41_RS05230 - tRNA-Arg, at 1,082,671 to 1,082,747
_RS05230
ABIE41_RS05235: ABIE41_RS05235 - LacI family DNA-binding transcriptional regulator, at 1,082,860 to 1,083,891
_RS05235
Position (kb)
1082
1083 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1082.371 kb on + strand, within ABIE41_RS05225 at 1082.371 kb on + strand, within ABIE41_RS05225 at 1082.371 kb on + strand, within ABIE41_RS05225 at 1082.372 kb on - strand, within ABIE41_RS05225 at 1082.453 kb on - strand, within ABIE41_RS05225 at 1082.453 kb on - strand, within ABIE41_RS05225 at 1082.760 kb on - strand at 1082.760 kb on - strand at 1082.958 kb on + strand at 1082.958 kb on + strand at 1082.958 kb on + strand at 1082.959 kb on - strand at 1082.959 kb on - strand at 1082.978 kb on + strand, within ABIE41_RS05235 at 1082.979 kb on - strand, within ABIE41_RS05235 at 1083.095 kb on + strand, within ABIE41_RS05235 at 1083.344 kb on - strand, within ABIE41_RS05235 at 1083.501 kb on - strand, within ABIE41_RS05235 at 1083.501 kb on - strand, within ABIE41_RS05235 at 1083.501 kb on - strand, within ABIE41_RS05235 at 1083.501 kb on - strand, within ABIE41_RS05235 at 1083.501 kb on - strand, within ABIE41_RS05235 at 1083.537 kb on - strand, within ABIE41_RS05235 at 1083.537 kb on - strand, within ABIE41_RS05235 at 1083.537 kb on - strand, within ABIE41_RS05235 at 1083.537 kb on - strand, within ABIE41_RS05235
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 1,082,371 + ABIE41_RS05225 0.54 -1.2 1,082,371 + ABIE41_RS05225 0.54 +0.5 1,082,371 + ABIE41_RS05225 0.54 -1.3 1,082,372 - ABIE41_RS05225 0.54 +0.3 1,082,453 - ABIE41_RS05225 0.75 -1.9 1,082,453 - ABIE41_RS05225 0.75 +0.1 1,082,760 - +0.1 1,082,760 - -0.3 1,082,958 + +0.0 1,082,958 + +0.8 1,082,958 + +0.6 1,082,959 - -0.5 1,082,959 - -1.1 1,082,978 + ABIE41_RS05235 0.11 +0.1 1,082,979 - ABIE41_RS05235 0.12 -0.1 1,083,095 + ABIE41_RS05235 0.23 +1.2 1,083,344 - ABIE41_RS05235 0.47 -0.4 1,083,501 - ABIE41_RS05235 0.62 +1.0 1,083,501 - ABIE41_RS05235 0.62 +0.2 1,083,501 - ABIE41_RS05235 0.62 -0.3 1,083,501 - ABIE41_RS05235 0.62 -0.1 1,083,501 - ABIE41_RS05235 0.62 +1.0 1,083,537 - ABIE41_RS05235 0.66 +0.1 1,083,537 - ABIE41_RS05235 0.66 +0.5 1,083,537 - ABIE41_RS05235 0.66 -0.9 1,083,537 - ABIE41_RS05235 0.66 +2.1
Or see this region's nucleotide sequence