Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04845

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04840 and ABIE41_RS04845 are separated by 55 nucleotidesABIE41_RS04845 and ABIE41_RS04850 are separated by 71 nucleotidesABIE41_RS04850 and ABIE41_RS04855 overlap by 4 nucleotides ABIE41_RS04840: ABIE41_RS04840 - signal recognition particle-docking protein FtsY, at 1,010,874 to 1,012,070 _RS04840 ABIE41_RS04845: ABIE41_RS04845 - septation protein A, at 1,012,126 to 1,012,743 _RS04845 ABIE41_RS04850: ABIE41_RS04850 - MbcA/ParS/Xre antitoxin family protein, at 1,012,815 to 1,013,225 _RS04850 ABIE41_RS04855: ABIE41_RS04855 - RES family NAD+ phosphorylase, at 1,013,222 to 1,013,959 _RS04855 Position (kb) 1012 1013Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1012.226 kb on - strand, within ABIE41_RS04845at 1012.336 kb on + strand, within ABIE41_RS04845at 1012.336 kb on + strand, within ABIE41_RS04845at 1012.337 kb on - strand, within ABIE41_RS04845at 1012.337 kb on - strand, within ABIE41_RS04845at 1012.481 kb on - strand, within ABIE41_RS04845at 1012.481 kb on - strand, within ABIE41_RS04845at 1012.741 kb on + strandat 1012.768 kb on + strandat 1012.842 kb on - strandat 1012.842 kb on - strandat 1012.842 kb on - strandat 1012.979 kb on - strand, within ABIE41_RS04850at 1013.097 kb on + strand, within ABIE41_RS04850at 1013.098 kb on - strand, within ABIE41_RS04850at 1013.098 kb on - strand, within ABIE41_RS04850at 1013.197 kb on - strandat 1013.525 kb on + strand, within ABIE41_RS04855at 1013.525 kb on + strand, within ABIE41_RS04855at 1013.714 kb on + strand, within ABIE41_RS04855at 1013.715 kb on - strand, within ABIE41_RS04855at 1013.715 kb on - strand, within ABIE41_RS04855at 1013.715 kb on - strand, within ABIE41_RS04855at 1013.715 kb on - strand, within ABIE41_RS04855at 1013.715 kb on - strand, within ABIE41_RS04855

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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1,012,226 - ABIE41_RS04845 0.16 -1.5
1,012,336 + ABIE41_RS04845 0.34 -2.1
1,012,336 + ABIE41_RS04845 0.34 -1.0
1,012,337 - ABIE41_RS04845 0.34 -1.6
1,012,337 - ABIE41_RS04845 0.34 -2.6
1,012,481 - ABIE41_RS04845 0.57 -4.3
1,012,481 - ABIE41_RS04845 0.57 -2.3
1,012,741 + +0.9
1,012,768 + -0.0
1,012,842 - -0.1
1,012,842 - -0.5
1,012,842 - -0.5
1,012,979 - ABIE41_RS04850 0.40 -0.2
1,013,097 + ABIE41_RS04850 0.69 -0.7
1,013,098 - ABIE41_RS04850 0.69 -0.1
1,013,098 - ABIE41_RS04850 0.69 -0.3
1,013,197 - +0.5
1,013,525 + ABIE41_RS04855 0.41 -0.2
1,013,525 + ABIE41_RS04855 0.41 +0.0
1,013,714 + ABIE41_RS04855 0.67 -0.3
1,013,715 - ABIE41_RS04855 0.67 -0.5
1,013,715 - ABIE41_RS04855 0.67 +0.1
1,013,715 - ABIE41_RS04855 0.67 +0.8
1,013,715 - ABIE41_RS04855 0.67 -0.4
1,013,715 - ABIE41_RS04855 0.67 -0.4

Or see this region's nucleotide sequence