Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03870 and ABIE41_RS03875 are separated by 25 nucleotides ABIE41_RS03875 and ABIE41_RS03880 are separated by 85 nucleotides ABIE41_RS03880 and ABIE41_RS03885 are separated by 201 nucleotides
ABIE41_RS03870: ABIE41_RS03870 - DNA repair putative endonuclease MmcB, at 804,999 to 805,463
_RS03870
ABIE41_RS03875: ABIE41_RS03875 - ActR/PrrA/RegA family redox response regulator transcription factor, at 805,489 to 806,046
_RS03875
ABIE41_RS03880: ABIE41_RS03880 - ActS/PrrB/RegB family redox-sensitive histidine kinase, at 806,132 to 807,487
_RS03880
ABIE41_RS03885: ABIE41_RS03885 - polyhydroxyalkanoate depolymerase, at 807,689 to 808,990
_RS03885
Position (kb) 806
807
808 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 805.245 kb on + strand, within ABIE41_RS03870 at 805.246 kb on - strand, within ABIE41_RS03870 at 805.332 kb on + strand, within ABIE41_RS03870 at 805.332 kb on + strand, within ABIE41_RS03870 at 805.333 kb on - strand, within ABIE41_RS03870 at 805.333 kb on - strand, within ABIE41_RS03870 at 805.586 kb on + strand, within ABIE41_RS03875 at 805.587 kb on - strand, within ABIE41_RS03875 at 805.587 kb on - strand, within ABIE41_RS03875 at 806.046 kb on + strand at 806.047 kb on - strand at 806.047 kb on - strand at 806.367 kb on + strand, within ABIE41_RS03880 at 806.367 kb on + strand, within ABIE41_RS03880 at 806.368 kb on - strand, within ABIE41_RS03880 at 806.520 kb on + strand, within ABIE41_RS03880 at 806.521 kb on - strand, within ABIE41_RS03880 at 806.521 kb on - strand, within ABIE41_RS03880 at 806.521 kb on - strand, within ABIE41_RS03880 at 806.521 kb on - strand, within ABIE41_RS03880 at 806.946 kb on + strand, within ABIE41_RS03880 at 806.946 kb on + strand, within ABIE41_RS03880 at 806.946 kb on + strand, within ABIE41_RS03880 at 806.946 kb on + strand, within ABIE41_RS03880 at 806.946 kb on + strand, within ABIE41_RS03880 at 806.946 kb on + strand, within ABIE41_RS03880 at 806.946 kb on + strand, within ABIE41_RS03880 at 806.946 kb on + strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 806.947 kb on - strand, within ABIE41_RS03880 at 807.000 kb on + strand, within ABIE41_RS03880 at 807.001 kb on - strand, within ABIE41_RS03880 at 807.192 kb on + strand, within ABIE41_RS03880 at 807.192 kb on + strand, within ABIE41_RS03880 at 807.192 kb on + strand, within ABIE41_RS03880 at 807.218 kb on - strand, within ABIE41_RS03880 at 807.595 kb on + strand at 807.595 kb on + strand at 807.595 kb on + strand at 807.595 kb on + strand at 807.596 kb on - strand at 807.596 kb on - strand at 807.596 kb on - strand at 807.614 kb on + strand at 807.614 kb on + strand at 807.615 kb on - strand at 807.616 kb on - strand at 807.673 kb on + strand at 807.673 kb on + strand at 807.673 kb on + strand at 807.673 kb on + strand at 807.673 kb on + strand at 807.674 kb on - strand at 807.674 kb on - strand at 807.677 kb on + strand at 807.677 kb on + strand at 807.677 kb on + strand at 807.677 kb on + strand at 807.677 kb on + strand at 807.677 kb on + strand at 807.678 kb on - strand at 807.678 kb on - strand at 807.702 kb on - strand at 807.800 kb on + strand at 807.800 kb on + strand at 807.800 kb on + strand at 807.801 kb on - strand at 807.801 kb on - strand at 807.801 kb on - strand at 807.801 kb on - strand at 807.801 kb on - strand at 807.966 kb on - strand, within ABIE41_RS03885 at 807.966 kb on - strand, within ABIE41_RS03885 at 808.094 kb on + strand, within ABIE41_RS03885 at 808.094 kb on + strand, within ABIE41_RS03885 at 808.094 kb on + strand, within ABIE41_RS03885 at 808.094 kb on + strand, within ABIE41_RS03885 at 808.095 kb on - strand, within ABIE41_RS03885 at 808.095 kb on - strand, within ABIE41_RS03885 at 808.095 kb on - strand, within ABIE41_RS03885 at 808.161 kb on - strand, within ABIE41_RS03885 at 808.161 kb on - strand, within ABIE41_RS03885 at 808.169 kb on + strand, within ABIE41_RS03885 at 808.169 kb on + strand, within ABIE41_RS03885 at 808.169 kb on + strand, within ABIE41_RS03885 at 808.170 kb on - strand, within ABIE41_RS03885 at 808.170 kb on - strand, within ABIE41_RS03885 at 808.170 kb on - strand, within ABIE41_RS03885 at 808.442 kb on + strand, within ABIE41_RS03885 at 808.442 kb on + strand, within ABIE41_RS03885 at 808.443 kb on - strand, within ABIE41_RS03885
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 805,245 + ABIE41_RS03870 0.53 -0.6 805,246 - ABIE41_RS03870 0.53 +0.2 805,332 + ABIE41_RS03870 0.72 -2.0 805,332 + ABIE41_RS03870 0.72 -0.1 805,333 - ABIE41_RS03870 0.72 +1.5 805,333 - ABIE41_RS03870 0.72 +0.2 805,586 + ABIE41_RS03875 0.17 -0.5 805,587 - ABIE41_RS03875 0.18 -0.8 805,587 - ABIE41_RS03875 0.18 +1.2 806,046 + -0.3 806,047 - +0.4 806,047 - -0.4 806,367 + ABIE41_RS03880 0.17 -0.0 806,367 + ABIE41_RS03880 0.17 -0.2 806,368 - ABIE41_RS03880 0.17 -0.2 806,520 + ABIE41_RS03880 0.29 +1.8 806,521 - ABIE41_RS03880 0.29 -0.2 806,521 - ABIE41_RS03880 0.29 +4.6 806,521 - ABIE41_RS03880 0.29 +0.5 806,521 - ABIE41_RS03880 0.29 -0.5 806,946 + ABIE41_RS03880 0.60 +0.5 806,946 + ABIE41_RS03880 0.60 +0.1 806,946 + ABIE41_RS03880 0.60 +0.1 806,946 + ABIE41_RS03880 0.60 +1.2 806,946 + ABIE41_RS03880 0.60 +0.9 806,946 + ABIE41_RS03880 0.60 +0.3 806,946 + ABIE41_RS03880 0.60 -0.2 806,946 + ABIE41_RS03880 0.60 -0.8 806,947 - ABIE41_RS03880 0.60 +1.0 806,947 - ABIE41_RS03880 0.60 -0.2 806,947 - ABIE41_RS03880 0.60 +0.3 806,947 - ABIE41_RS03880 0.60 -0.2 806,947 - ABIE41_RS03880 0.60 -0.0 806,947 - ABIE41_RS03880 0.60 -0.1 806,947 - ABIE41_RS03880 0.60 +0.4 806,947 - ABIE41_RS03880 0.60 -0.2 806,947 - ABIE41_RS03880 0.60 +0.6 806,947 - ABIE41_RS03880 0.60 -0.1 806,947 - ABIE41_RS03880 0.60 +0.1 806,947 - ABIE41_RS03880 0.60 +1.3 806,947 - ABIE41_RS03880 0.60 -0.3 807,000 + ABIE41_RS03880 0.64 +0.2 807,001 - ABIE41_RS03880 0.64 -0.4 807,192 + ABIE41_RS03880 0.78 -0.6 807,192 + ABIE41_RS03880 0.78 +1.3 807,192 + ABIE41_RS03880 0.78 -0.2 807,218 - ABIE41_RS03880 0.80 -0.7 807,595 + -0.3 807,595 + -1.2 807,595 + -0.7 807,595 + -1.4 807,596 - -0.1 807,596 - -0.3 807,596 - -0.3 807,614 + +1.0 807,614 + +0.6 807,615 - +1.5 807,616 - +0.0 807,673 + +1.0 807,673 + -1.7 807,673 + +1.2 807,673 + -0.3 807,673 + -0.3 807,674 - -0.1 807,674 - +1.0 807,677 + +0.5 807,677 + +1.0 807,677 + -0.1 807,677 + -0.9 807,677 + +0.6 807,677 + +0.4 807,678 - -0.7 807,678 - -0.1 807,702 - -0.4 807,800 + +2.9 807,800 + -0.1 807,800 + -0.2 807,801 - -0.3 807,801 - +2.3 807,801 - +0.4 807,801 - -1.5 807,801 - +0.0 807,966 - ABIE41_RS03885 0.21 -0.1 807,966 - ABIE41_RS03885 0.21 -0.4 808,094 + ABIE41_RS03885 0.31 +1.1 808,094 + ABIE41_RS03885 0.31 +0.4 808,094 + ABIE41_RS03885 0.31 -1.0 808,094 + ABIE41_RS03885 0.31 +1.0 808,095 - ABIE41_RS03885 0.31 -1.1 808,095 - ABIE41_RS03885 0.31 -1.1 808,095 - ABIE41_RS03885 0.31 -0.0 808,161 - ABIE41_RS03885 0.36 -0.0 808,161 - ABIE41_RS03885 0.36 -0.3 808,169 + ABIE41_RS03885 0.37 +2.0 808,169 + ABIE41_RS03885 0.37 -2.3 808,169 + ABIE41_RS03885 0.37 -0.5 808,170 - ABIE41_RS03885 0.37 +0.1 808,170 - ABIE41_RS03885 0.37 +1.0 808,170 - ABIE41_RS03885 0.37 +0.6 808,442 + ABIE41_RS03885 0.58 -1.3 808,442 + ABIE41_RS03885 0.58 -0.1 808,443 - ABIE41_RS03885 0.58 +0.5
Or see this region's nucleotide sequence