Strain Fitness in Bosea sp. OAE506 around ABIE41_RS03480

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS03475 and ABIE41_RS03480 are separated by 152 nucleotidesABIE41_RS03480 and ABIE41_RS03485 are separated by 411 nucleotides ABIE41_RS03475: ABIE41_RS03475 - protein-disulfide reductase DsbD domain-containing protein, at 722,269 to 724,425 _RS03475 ABIE41_RS03480: ABIE41_RS03480 - hypothetical protein, at 724,578 to 725,390 _RS03480 ABIE41_RS03485: ABIE41_RS03485 - molecular chaperone DnaK, at 725,802 to 727,727 _RS03485 Position (kb) 724 725 726Strain fitness (log2 ratio) -2 -1 0 1at 724.579 kb on + strandat 724.579 kb on + strandat 724.579 kb on + strandat 724.580 kb on - strandat 724.739 kb on - strand, within ABIE41_RS03480at 724.739 kb on - strand, within ABIE41_RS03480at 724.739 kb on - strand, within ABIE41_RS03480at 725.649 kb on + strandat 725.649 kb on + strandat 725.651 kb on + strandat 725.651 kb on + strandat 725.651 kb on + strandat 725.651 kb on + strandat 725.651 kb on + strandat 725.653 kb on + strandat 725.653 kb on + strandat 725.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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724,579 + -0.0
724,579 + +0.4
724,579 + +1.4
724,580 - +0.4
724,739 - ABIE41_RS03480 0.20 -0.7
724,739 - ABIE41_RS03480 0.20 -0.4
724,739 - ABIE41_RS03480 0.20 -0.0
725,649 + -0.4
725,649 + -1.3
725,651 + +0.3
725,651 + +1.1
725,651 + -2.3
725,651 + +0.2
725,651 + -2.0
725,653 + +0.0
725,653 + -0.4
725,653 + -1.1

Or see this region's nucleotide sequence