Strain Fitness in Bosea sp. OAE506 around ABIE41_RS03350

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS03345 and ABIE41_RS03350 are separated by 127 nucleotidesABIE41_RS03350 and ABIE41_RS03355 are separated by 124 nucleotides ABIE41_RS03345: ABIE41_RS03345 - BMP family ABC transporter substrate-binding protein, at 696,603 to 697,604 _RS03345 ABIE41_RS03350: ABIE41_RS03350 - ABC transporter ATP-binding protein, at 697,732 to 699,264 _RS03350 ABIE41_RS03355: ABIE41_RS03355 - ABC transporter permease, at 699,389 to 700,489 _RS03355 Position (kb) 697 698 699 700Strain fitness (log2 ratio) -2 -1 0 1 2 3at 697.002 kb on + strand, within ABIE41_RS03345at 697.002 kb on + strand, within ABIE41_RS03345at 697.002 kb on + strand, within ABIE41_RS03345at 697.002 kb on + strand, within ABIE41_RS03345at 697.002 kb on + strand, within ABIE41_RS03345at 697.002 kb on + strand, within ABIE41_RS03345at 697.002 kb on + strand, within ABIE41_RS03345at 697.003 kb on - strand, within ABIE41_RS03345at 697.242 kb on + strand, within ABIE41_RS03345at 697.242 kb on + strand, within ABIE41_RS03345at 697.242 kb on + strand, within ABIE41_RS03345at 697.243 kb on - strand, within ABIE41_RS03345at 697.243 kb on - strand, within ABIE41_RS03345at 697.243 kb on - strand, within ABIE41_RS03345at 697.243 kb on - strand, within ABIE41_RS03345at 697.243 kb on - strand, within ABIE41_RS03345at 697.243 kb on - strand, within ABIE41_RS03345at 697.390 kb on - strand, within ABIE41_RS03345at 697.390 kb on - strand, within ABIE41_RS03345at 697.390 kb on - strand, within ABIE41_RS03345at 697.390 kb on - strand, within ABIE41_RS03345at 697.575 kb on + strandat 697.575 kb on + strandat 697.575 kb on + strandat 697.575 kb on + strandat 697.575 kb on + strandat 697.576 kb on - strandat 697.576 kb on - strandat 697.576 kb on - strandat 697.576 kb on - strandat 697.576 kb on - strandat 697.576 kb on - strandat 697.891 kb on + strand, within ABIE41_RS03350at 697.900 kb on + strand, within ABIE41_RS03350at 697.900 kb on + strand, within ABIE41_RS03350at 698.123 kb on - strand, within ABIE41_RS03350at 698.825 kb on - strand, within ABIE41_RS03350at 698.908 kb on + strand, within ABIE41_RS03350at 698.908 kb on + strand, within ABIE41_RS03350at 698.908 kb on + strand, within ABIE41_RS03350at 698.909 kb on - strand, within ABIE41_RS03350at 698.909 kb on - strand, within ABIE41_RS03350at 698.909 kb on - strand, within ABIE41_RS03350at 699.275 kb on + strandat 699.575 kb on + strand, within ABIE41_RS03355at 699.575 kb on + strand, within ABIE41_RS03355at 699.576 kb on - strand, within ABIE41_RS03355at 699.578 kb on + strand, within ABIE41_RS03355at 699.578 kb on + strand, within ABIE41_RS03355at 699.578 kb on + strand, within ABIE41_RS03355at 699.578 kb on + strand, within ABIE41_RS03355at 699.579 kb on - strand, within ABIE41_RS03355at 699.579 kb on - strand, within ABIE41_RS03355at 699.637 kb on - strand, within ABIE41_RS03355at 699.826 kb on + strand, within ABIE41_RS03355at 699.826 kb on + strand, within ABIE41_RS03355at 699.827 kb on - strand, within ABIE41_RS03355at 699.869 kb on + strand, within ABIE41_RS03355at 699.869 kb on + strand, within ABIE41_RS03355at 699.869 kb on + strand, within ABIE41_RS03355at 699.869 kb on + strand, within ABIE41_RS03355at 699.869 kb on + strand, within ABIE41_RS03355at 699.870 kb on - strand, within ABIE41_RS03355at 699.870 kb on - strand, within ABIE41_RS03355

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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697,002 + ABIE41_RS03345 0.40 -0.8
697,002 + ABIE41_RS03345 0.40 -0.3
697,002 + ABIE41_RS03345 0.40 +0.6
697,002 + ABIE41_RS03345 0.40 -2.0
697,002 + ABIE41_RS03345 0.40 -0.7
697,002 + ABIE41_RS03345 0.40 +0.2
697,002 + ABIE41_RS03345 0.40 +0.5
697,003 - ABIE41_RS03345 0.40 -0.1
697,242 + ABIE41_RS03345 0.64 +0.8
697,242 + ABIE41_RS03345 0.64 -1.3
697,242 + ABIE41_RS03345 0.64 +0.3
697,243 - ABIE41_RS03345 0.64 +0.6
697,243 - ABIE41_RS03345 0.64 -0.3
697,243 - ABIE41_RS03345 0.64 +0.2
697,243 - ABIE41_RS03345 0.64 +0.1
697,243 - ABIE41_RS03345 0.64 -0.2
697,243 - ABIE41_RS03345 0.64 +0.1
697,390 - ABIE41_RS03345 0.79 +2.5
697,390 - ABIE41_RS03345 0.79 -0.1
697,390 - ABIE41_RS03345 0.79 +0.3
697,390 - ABIE41_RS03345 0.79 -0.1
697,575 + -0.2
697,575 + -0.9
697,575 + -1.1
697,575 + +0.6
697,575 + +3.1
697,576 - -0.7
697,576 - -0.7
697,576 - -1.4
697,576 - -0.2
697,576 - +0.7
697,576 - +0.1
697,891 + ABIE41_RS03350 0.10 +0.8
697,900 + ABIE41_RS03350 0.11 +3.1
697,900 + ABIE41_RS03350 0.11 +1.0
698,123 - ABIE41_RS03350 0.26 -0.1
698,825 - ABIE41_RS03350 0.71 +0.2
698,908 + ABIE41_RS03350 0.77 +0.2
698,908 + ABIE41_RS03350 0.77 +0.1
698,908 + ABIE41_RS03350 0.77 +1.4
698,909 - ABIE41_RS03350 0.77 -0.4
698,909 - ABIE41_RS03350 0.77 +0.4
698,909 - ABIE41_RS03350 0.77 +0.9
699,275 + -0.6
699,575 + ABIE41_RS03355 0.17 +1.3
699,575 + ABIE41_RS03355 0.17 +2.2
699,576 - ABIE41_RS03355 0.17 -2.5
699,578 + ABIE41_RS03355 0.17 -1.3
699,578 + ABIE41_RS03355 0.17 -0.3
699,578 + ABIE41_RS03355 0.17 -0.5
699,578 + ABIE41_RS03355 0.17 -0.8
699,579 - ABIE41_RS03355 0.17 -0.0
699,579 - ABIE41_RS03355 0.17 +0.1
699,637 - ABIE41_RS03355 0.23 -0.1
699,826 + ABIE41_RS03355 0.40 +0.7
699,826 + ABIE41_RS03355 0.40 +0.1
699,827 - ABIE41_RS03355 0.40 +0.8
699,869 + ABIE41_RS03355 0.44 +0.7
699,869 + ABIE41_RS03355 0.44 -0.2
699,869 + ABIE41_RS03355 0.44 -0.0
699,869 + ABIE41_RS03355 0.44 +0.1
699,869 + ABIE41_RS03355 0.44 +1.5
699,870 - ABIE41_RS03355 0.44 +0.3
699,870 - ABIE41_RS03355 0.44 +0.3

Or see this region's nucleotide sequence