Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02735 and ABIE41_RS02740 are separated by 75 nucleotides ABIE41_RS02740 and ABIE41_RS02745 are separated by 297 nucleotides ABIE41_RS02745 and ABIE41_RS02750 are separated by 5 nucleotides
ABIE41_RS02735: ABIE41_RS02735 - thioredoxin, at 560,277 to 560,597
_RS02735
ABIE41_RS02740: ABIE41_RS02740 - DoxX family protein, at 560,673 to 561,068
_RS02740
ABIE41_RS02745: ABIE41_RS02745 - PBP1A family penicillin-binding protein, at 561,366 to 563,513
_RS02745
ABIE41_RS02750: ABIE41_RS02750 - multidrug effflux MFS transporter, at 563,519 to 564,715
_RS02750
Position (kb) 561
562
563
564 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 560.671 kb on + strand at 560.672 kb on - strand at 560.731 kb on + strand, within ABIE41_RS02740 at 560.732 kb on - strand, within ABIE41_RS02740 at 560.785 kb on + strand, within ABIE41_RS02740 at 560.785 kb on + strand, within ABIE41_RS02740 at 560.786 kb on - strand, within ABIE41_RS02740 at 560.786 kb on - strand, within ABIE41_RS02740 at 560.816 kb on - strand, within ABIE41_RS02740 at 561.038 kb on - strand at 561.038 kb on - strand at 561.038 kb on - strand at 561.229 kb on - strand at 561.229 kb on - strand at 561.229 kb on - strand at 561.229 kb on - strand at 561.235 kb on - strand at 561.278 kb on + strand at 561.278 kb on + strand at 561.279 kb on - strand at 561.289 kb on + strand at 561.600 kb on + strand, within ABIE41_RS02745 at 561.601 kb on - strand, within ABIE41_RS02745 at 561.657 kb on + strand, within ABIE41_RS02745 at 561.804 kb on + strand, within ABIE41_RS02745 at 561.846 kb on + strand, within ABIE41_RS02745 at 561.847 kb on - strand, within ABIE41_RS02745 at 562.035 kb on + strand, within ABIE41_RS02745 at 562.036 kb on - strand, within ABIE41_RS02745 at 562.036 kb on - strand, within ABIE41_RS02745 at 562.036 kb on - strand, within ABIE41_RS02745 at 562.078 kb on - strand, within ABIE41_RS02745 at 562.122 kb on + strand, within ABIE41_RS02745 at 562.122 kb on + strand, within ABIE41_RS02745 at 562.123 kb on - strand, within ABIE41_RS02745 at 562.123 kb on - strand, within ABIE41_RS02745 at 562.183 kb on + strand, within ABIE41_RS02745 at 562.184 kb on - strand, within ABIE41_RS02745 at 562.184 kb on - strand, within ABIE41_RS02745 at 562.310 kb on - strand, within ABIE41_RS02745 at 562.357 kb on - strand, within ABIE41_RS02745 at 562.369 kb on - strand, within ABIE41_RS02745 at 562.369 kb on - strand, within ABIE41_RS02745 at 562.369 kb on - strand, within ABIE41_RS02745 at 562.466 kb on + strand, within ABIE41_RS02745 at 562.466 kb on + strand, within ABIE41_RS02745 at 562.467 kb on - strand, within ABIE41_RS02745 at 562.467 kb on - strand, within ABIE41_RS02745 at 562.467 kb on - strand, within ABIE41_RS02745 at 562.578 kb on + strand, within ABIE41_RS02745 at 562.579 kb on - strand, within ABIE41_RS02745 at 562.651 kb on - strand, within ABIE41_RS02745 at 562.737 kb on + strand, within ABIE41_RS02745 at 562.737 kb on + strand, within ABIE41_RS02745 at 562.737 kb on + strand, within ABIE41_RS02745 at 562.737 kb on + strand, within ABIE41_RS02745 at 562.737 kb on + strand, within ABIE41_RS02745 at 562.738 kb on - strand, within ABIE41_RS02745 at 562.840 kb on + strand, within ABIE41_RS02745 at 562.841 kb on - strand, within ABIE41_RS02745 at 562.944 kb on + strand, within ABIE41_RS02745 at 562.945 kb on - strand, within ABIE41_RS02745 at 562.982 kb on + strand, within ABIE41_RS02745 at 562.983 kb on + strand, within ABIE41_RS02745 at 562.983 kb on + strand, within ABIE41_RS02745 at 562.983 kb on + strand, within ABIE41_RS02745 at 562.984 kb on - strand, within ABIE41_RS02745 at 562.984 kb on - strand, within ABIE41_RS02745 at 562.984 kb on - strand, within ABIE41_RS02745 at 562.984 kb on - strand, within ABIE41_RS02745 at 563.025 kb on + strand, within ABIE41_RS02745 at 563.025 kb on + strand, within ABIE41_RS02745 at 563.025 kb on + strand, within ABIE41_RS02745 at 563.025 kb on + strand, within ABIE41_RS02745 at 563.025 kb on + strand, within ABIE41_RS02745 at 563.025 kb on + strand, within ABIE41_RS02745 at 563.025 kb on + strand, within ABIE41_RS02745 at 563.025 kb on + strand, within ABIE41_RS02745 at 563.025 kb on + strand, within ABIE41_RS02745 at 563.026 kb on - strand, within ABIE41_RS02745 at 563.026 kb on - strand, within ABIE41_RS02745 at 563.026 kb on - strand, within ABIE41_RS02745 at 563.026 kb on - strand, within ABIE41_RS02745 at 563.026 kb on - strand, within ABIE41_RS02745 at 563.026 kb on - strand, within ABIE41_RS02745 at 563.096 kb on - strand, within ABIE41_RS02745 at 563.307 kb on + strand at 563.307 kb on + strand at 563.307 kb on + strand at 563.307 kb on + strand at 563.307 kb on + strand at 563.307 kb on + strand at 563.307 kb on + strand at 563.307 kb on + strand at 563.307 kb on + strand at 563.308 kb on - strand at 563.308 kb on - strand at 563.308 kb on - strand at 563.308 kb on - strand at 563.308 kb on - strand at 563.308 kb on - strand at 563.308 kb on - strand at 563.308 kb on - strand at 563.769 kb on + strand, within ABIE41_RS02750 at 563.769 kb on + strand, within ABIE41_RS02750 at 563.770 kb on - strand, within ABIE41_RS02750 at 563.770 kb on - strand, within ABIE41_RS02750 at 563.967 kb on + strand, within ABIE41_RS02750 at 563.968 kb on - strand, within ABIE41_RS02750 at 563.968 kb on - strand, within ABIE41_RS02750 at 564.042 kb on + strand, within ABIE41_RS02750 at 564.066 kb on + strand, within ABIE41_RS02750 at 564.066 kb on + strand, within ABIE41_RS02750 at 564.066 kb on + strand, within ABIE41_RS02750 at 564.067 kb on - strand, within ABIE41_RS02750 at 564.067 kb on - strand, within ABIE41_RS02750 at 564.067 kb on - strand, within ABIE41_RS02750 at 564.339 kb on + strand, within ABIE41_RS02750 at 564.340 kb on - strand, within ABIE41_RS02750
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 560,671 + -0.7 560,672 - +2.0 560,731 + ABIE41_RS02740 0.15 +0.1 560,732 - ABIE41_RS02740 0.15 +1.3 560,785 + ABIE41_RS02740 0.28 +2.8 560,785 + ABIE41_RS02740 0.28 -0.2 560,786 - ABIE41_RS02740 0.29 +0.2 560,786 - ABIE41_RS02740 0.29 +2.7 560,816 - ABIE41_RS02740 0.36 -0.9 561,038 - +0.2 561,038 - +0.1 561,038 - -3.8 561,229 - +0.8 561,229 - -0.8 561,229 - -0.8 561,229 - +0.8 561,235 - -0.6 561,278 + +0.9 561,278 + +0.3 561,279 - +0.5 561,289 + +0.1 561,600 + ABIE41_RS02745 0.11 -0.4 561,601 - ABIE41_RS02745 0.11 -0.2 561,657 + ABIE41_RS02745 0.14 -0.4 561,804 + ABIE41_RS02745 0.20 +2.0 561,846 + ABIE41_RS02745 0.22 -1.7 561,847 - ABIE41_RS02745 0.22 -0.5 562,035 + ABIE41_RS02745 0.31 -0.8 562,036 - ABIE41_RS02745 0.31 -1.1 562,036 - ABIE41_RS02745 0.31 -0.3 562,036 - ABIE41_RS02745 0.31 -1.1 562,078 - ABIE41_RS02745 0.33 -0.8 562,122 + ABIE41_RS02745 0.35 -0.3 562,122 + ABIE41_RS02745 0.35 -1.4 562,123 - ABIE41_RS02745 0.35 -0.3 562,123 - ABIE41_RS02745 0.35 +0.2 562,183 + ABIE41_RS02745 0.38 -0.0 562,184 - ABIE41_RS02745 0.38 -1.3 562,184 - ABIE41_RS02745 0.38 -0.8 562,310 - ABIE41_RS02745 0.44 +0.9 562,357 - ABIE41_RS02745 0.46 -1.3 562,369 - ABIE41_RS02745 0.47 -1.7 562,369 - ABIE41_RS02745 0.47 -1.6 562,369 - ABIE41_RS02745 0.47 -0.8 562,466 + ABIE41_RS02745 0.51 -0.3 562,466 + ABIE41_RS02745 0.51 +0.1 562,467 - ABIE41_RS02745 0.51 +0.8 562,467 - ABIE41_RS02745 0.51 +0.7 562,467 - ABIE41_RS02745 0.51 -1.7 562,578 + ABIE41_RS02745 0.56 +0.1 562,579 - ABIE41_RS02745 0.56 -0.4 562,651 - ABIE41_RS02745 0.60 -1.0 562,737 + ABIE41_RS02745 0.64 -0.4 562,737 + ABIE41_RS02745 0.64 -1.0 562,737 + ABIE41_RS02745 0.64 -0.3 562,737 + ABIE41_RS02745 0.64 +3.6 562,737 + ABIE41_RS02745 0.64 -2.7 562,738 - ABIE41_RS02745 0.64 +0.0 562,840 + ABIE41_RS02745 0.69 +0.1 562,841 - ABIE41_RS02745 0.69 -0.6 562,944 + ABIE41_RS02745 0.73 -0.1 562,945 - ABIE41_RS02745 0.74 +0.1 562,982 + ABIE41_RS02745 0.75 -1.3 562,983 + ABIE41_RS02745 0.75 -0.6 562,983 + ABIE41_RS02745 0.75 +0.2 562,983 + ABIE41_RS02745 0.75 -0.7 562,984 - ABIE41_RS02745 0.75 -0.3 562,984 - ABIE41_RS02745 0.75 -0.7 562,984 - ABIE41_RS02745 0.75 +0.4 562,984 - ABIE41_RS02745 0.75 -1.6 563,025 + ABIE41_RS02745 0.77 -1.1 563,025 + ABIE41_RS02745 0.77 -0.6 563,025 + ABIE41_RS02745 0.77 -0.5 563,025 + ABIE41_RS02745 0.77 +0.1 563,025 + ABIE41_RS02745 0.77 +0.0 563,025 + ABIE41_RS02745 0.77 +0.7 563,025 + ABIE41_RS02745 0.77 -0.1 563,025 + ABIE41_RS02745 0.77 -0.1 563,025 + ABIE41_RS02745 0.77 -0.3 563,026 - ABIE41_RS02745 0.77 -0.3 563,026 - ABIE41_RS02745 0.77 -0.1 563,026 - ABIE41_RS02745 0.77 -1.1 563,026 - ABIE41_RS02745 0.77 -0.3 563,026 - ABIE41_RS02745 0.77 +0.4 563,026 - ABIE41_RS02745 0.77 -0.1 563,096 - ABIE41_RS02745 0.81 +0.4 563,307 + -0.1 563,307 + +1.3 563,307 + -2.6 563,307 + +0.1 563,307 + +0.2 563,307 + -1.5 563,307 + +0.2 563,307 + +0.8 563,307 + -2.1 563,308 - +0.2 563,308 - -0.3 563,308 - -0.4 563,308 - -1.8 563,308 - +0.4 563,308 - -1.3 563,308 - +0.5 563,308 - -0.8 563,769 + ABIE41_RS02750 0.21 -0.1 563,769 + ABIE41_RS02750 0.21 +0.6 563,770 - ABIE41_RS02750 0.21 +1.2 563,770 - ABIE41_RS02750 0.21 +0.1 563,967 + ABIE41_RS02750 0.37 -0.3 563,968 - ABIE41_RS02750 0.38 +1.1 563,968 - ABIE41_RS02750 0.38 -1.3 564,042 + ABIE41_RS02750 0.44 +0.6 564,066 + ABIE41_RS02750 0.46 +0.4 564,066 + ABIE41_RS02750 0.46 +0.3 564,066 + ABIE41_RS02750 0.46 +1.2 564,067 - ABIE41_RS02750 0.46 -0.1 564,067 - ABIE41_RS02750 0.46 -2.2 564,067 - ABIE41_RS02750 0.46 -1.0 564,339 + ABIE41_RS02750 0.69 -0.6 564,340 - ABIE41_RS02750 0.69 -0.6
Or see this region's nucleotide sequence