Strain Fitness in Bosea sp. OAE506 around ABIE41_RS02440

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS02430 and ABIE41_RS02435 are separated by 157 nucleotidesABIE41_RS02435 and ABIE41_RS02440 are separated by 88 nucleotidesABIE41_RS02440 and ABIE41_RS02445 are separated by 8 nucleotides ABIE41_RS02430: ABIE41_RS02430 - PHB depolymerase family esterase, at 484,184 to 485,038 _RS02430 ABIE41_RS02435: ABIE41_RS02435 - sigma-70 family RNA polymerase sigma factor, at 485,196 to 485,768 _RS02435 ABIE41_RS02440: ABIE41_RS02440 - DUF1109 domain-containing protein, at 485,857 to 486,498 _RS02440 ABIE41_RS02445: ABIE41_RS02445 - class I SAM-dependent methyltransferase, at 486,507 to 487,289 _RS02445 Position (kb) 485 486 487Strain fitness (log2 ratio) -2 -1 0 1 2 3at 484.860 kb on + strand, within ABIE41_RS02430at 484.860 kb on + strand, within ABIE41_RS02430at 484.860 kb on + strand, within ABIE41_RS02430at 484.860 kb on + strand, within ABIE41_RS02430at 484.860 kb on + strand, within ABIE41_RS02430at 484.860 kb on + strand, within ABIE41_RS02430at 484.860 kb on + strand, within ABIE41_RS02430at 484.860 kb on + strand, within ABIE41_RS02430at 484.861 kb on - strand, within ABIE41_RS02430at 484.861 kb on - strand, within ABIE41_RS02430at 484.861 kb on - strand, within ABIE41_RS02430at 484.861 kb on - strand, within ABIE41_RS02430at 484.918 kb on - strand, within ABIE41_RS02430at 485.368 kb on + strand, within ABIE41_RS02435at 485.368 kb on + strand, within ABIE41_RS02435at 485.368 kb on + strand, within ABIE41_RS02435at 485.368 kb on + strand, within ABIE41_RS02435at 485.368 kb on + strand, within ABIE41_RS02435at 485.368 kb on + strand, within ABIE41_RS02435at 485.368 kb on + strand, within ABIE41_RS02435at 485.368 kb on + strand, within ABIE41_RS02435at 485.369 kb on - strand, within ABIE41_RS02435at 485.369 kb on - strand, within ABIE41_RS02435at 485.369 kb on - strand, within ABIE41_RS02435at 485.369 kb on - strand, within ABIE41_RS02435at 485.369 kb on - strand, within ABIE41_RS02435at 485.369 kb on - strand, within ABIE41_RS02435at 485.408 kb on + strand, within ABIE41_RS02435at 485.408 kb on + strand, within ABIE41_RS02435at 485.408 kb on + strand, within ABIE41_RS02435at 485.408 kb on + strand, within ABIE41_RS02435at 485.409 kb on - strand, within ABIE41_RS02435at 485.409 kb on - strand, within ABIE41_RS02435at 485.409 kb on - strand, within ABIE41_RS02435at 485.412 kb on + strand, within ABIE41_RS02435at 485.412 kb on + strand, within ABIE41_RS02435at 485.412 kb on + strand, within ABIE41_RS02435at 485.412 kb on + strand, within ABIE41_RS02435at 485.412 kb on + strand, within ABIE41_RS02435at 485.412 kb on + strand, within ABIE41_RS02435at 485.413 kb on - strand, within ABIE41_RS02435at 485.413 kb on - strand, within ABIE41_RS02435at 485.413 kb on - strand, within ABIE41_RS02435at 485.413 kb on - strand, within ABIE41_RS02435at 485.461 kb on - strand, within ABIE41_RS02435at 485.461 kb on - strand, within ABIE41_RS02435at 485.790 kb on + strandat 485.791 kb on - strandat 486.265 kb on + strand, within ABIE41_RS02440at 486.266 kb on - strand, within ABIE41_RS02440at 486.266 kb on - strand, within ABIE41_RS02440at 486.266 kb on - strand, within ABIE41_RS02440at 486.272 kb on + strand, within ABIE41_RS02440at 486.272 kb on + strand, within ABIE41_RS02440at 486.272 kb on + strand, within ABIE41_RS02440at 486.273 kb on - strand, within ABIE41_RS02440at 486.273 kb on - strand, within ABIE41_RS02440at 486.383 kb on - strand, within ABIE41_RS02440at 486.430 kb on + strand, within ABIE41_RS02440at 486.430 kb on + strand, within ABIE41_RS02440at 486.431 kb on - strand, within ABIE41_RS02440at 486.496 kb on + strandat 486.497 kb on - strandat 486.497 kb on - strandat 486.497 kb on - strandat 486.691 kb on + strand, within ABIE41_RS02445at 486.727 kb on + strand, within ABIE41_RS02445at 486.934 kb on + strand, within ABIE41_RS02445at 486.934 kb on + strand, within ABIE41_RS02445at 486.934 kb on + strand, within ABIE41_RS02445at 486.934 kb on + strand, within ABIE41_RS02445at 486.934 kb on + strand, within ABIE41_RS02445at 486.934 kb on + strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.935 kb on - strand, within ABIE41_RS02445at 486.976 kb on + strand, within ABIE41_RS02445

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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484,860 + ABIE41_RS02430 0.79 -0.3
484,860 + ABIE41_RS02430 0.79 -0.2
484,860 + ABIE41_RS02430 0.79 +1.0
484,860 + ABIE41_RS02430 0.79 -0.2
484,860 + ABIE41_RS02430 0.79 +0.5
484,860 + ABIE41_RS02430 0.79 -0.2
484,860 + ABIE41_RS02430 0.79 -0.8
484,860 + ABIE41_RS02430 0.79 +1.3
484,861 - ABIE41_RS02430 0.79 +0.1
484,861 - ABIE41_RS02430 0.79 +0.0
484,861 - ABIE41_RS02430 0.79 +0.1
484,861 - ABIE41_RS02430 0.79 +0.2
484,918 - ABIE41_RS02430 0.86 +0.5
485,368 + ABIE41_RS02435 0.30 +0.5
485,368 + ABIE41_RS02435 0.30 +1.2
485,368 + ABIE41_RS02435 0.30 +0.6
485,368 + ABIE41_RS02435 0.30 -0.4
485,368 + ABIE41_RS02435 0.30 +0.2
485,368 + ABIE41_RS02435 0.30 +0.6
485,368 + ABIE41_RS02435 0.30 +1.0
485,368 + ABIE41_RS02435 0.30 -0.8
485,369 - ABIE41_RS02435 0.30 +0.8
485,369 - ABIE41_RS02435 0.30 +0.2
485,369 - ABIE41_RS02435 0.30 +0.0
485,369 - ABIE41_RS02435 0.30 +1.6
485,369 - ABIE41_RS02435 0.30 +0.6
485,369 - ABIE41_RS02435 0.30 -0.8
485,408 + ABIE41_RS02435 0.37 +0.5
485,408 + ABIE41_RS02435 0.37 -0.0
485,408 + ABIE41_RS02435 0.37 -0.8
485,408 + ABIE41_RS02435 0.37 +0.4
485,409 - ABIE41_RS02435 0.37 -0.5
485,409 - ABIE41_RS02435 0.37 -0.5
485,409 - ABIE41_RS02435 0.37 -0.4
485,412 + ABIE41_RS02435 0.38 -0.4
485,412 + ABIE41_RS02435 0.38 -0.5
485,412 + ABIE41_RS02435 0.38 -0.5
485,412 + ABIE41_RS02435 0.38 +0.2
485,412 + ABIE41_RS02435 0.38 +0.9
485,412 + ABIE41_RS02435 0.38 -1.5
485,413 - ABIE41_RS02435 0.38 -0.2
485,413 - ABIE41_RS02435 0.38 -0.5
485,413 - ABIE41_RS02435 0.38 -0.6
485,413 - ABIE41_RS02435 0.38 -0.5
485,461 - ABIE41_RS02435 0.46 -0.4
485,461 - ABIE41_RS02435 0.46 +0.4
485,790 + -0.5
485,791 - -0.3
486,265 + ABIE41_RS02440 0.64 -0.3
486,266 - ABIE41_RS02440 0.64 +0.5
486,266 - ABIE41_RS02440 0.64 -0.4
486,266 - ABIE41_RS02440 0.64 -0.8
486,272 + ABIE41_RS02440 0.65 -0.2
486,272 + ABIE41_RS02440 0.65 -0.2
486,272 + ABIE41_RS02440 0.65 +3.4
486,273 - ABIE41_RS02440 0.65 -0.7
486,273 - ABIE41_RS02440 0.65 -1.4
486,383 - ABIE41_RS02440 0.82 -1.9
486,430 + ABIE41_RS02440 0.89 -0.7
486,430 + ABIE41_RS02440 0.89 -1.1
486,431 - ABIE41_RS02440 0.89 -0.9
486,496 + +0.1
486,497 - +0.6
486,497 - -1.3
486,497 - +0.2
486,691 + ABIE41_RS02445 0.23 -0.4
486,727 + ABIE41_RS02445 0.28 -0.0
486,934 + ABIE41_RS02445 0.55 -0.8
486,934 + ABIE41_RS02445 0.55 +0.6
486,934 + ABIE41_RS02445 0.55 +0.7
486,934 + ABIE41_RS02445 0.55 +0.0
486,934 + ABIE41_RS02445 0.55 +0.3
486,934 + ABIE41_RS02445 0.55 +0.5
486,935 - ABIE41_RS02445 0.55 +0.1
486,935 - ABIE41_RS02445 0.55 +0.3
486,935 - ABIE41_RS02445 0.55 +2.5
486,935 - ABIE41_RS02445 0.55 -0.1
486,935 - ABIE41_RS02445 0.55 -0.4
486,935 - ABIE41_RS02445 0.55 -0.2
486,935 - ABIE41_RS02445 0.55 +0.9
486,935 - ABIE41_RS02445 0.55 +0.1
486,935 - ABIE41_RS02445 0.55 -0.6
486,935 - ABIE41_RS02445 0.55 -1.5
486,935 - ABIE41_RS02445 0.55 -2.0
486,935 - ABIE41_RS02445 0.55 -0.5
486,976 + ABIE41_RS02445 0.60 -1.0

Or see this region's nucleotide sequence