Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01640 and ABIE41_RS01645 overlap by 23 nucleotides ABIE41_RS01645 and ABIE41_RS01650 are separated by 153 nucleotides ABIE41_RS01650 and ABIE41_RS01655 are separated by 69 nucleotides ABIE41_RS01655 and ABIE41_RS01660 are separated by 201 nucleotides
ABIE41_RS01640: ABIE41_RS01640 - LysR substrate-binding domain-containing protein, at 330,261 to 331,184
_RS01640
ABIE41_RS01645: ABIE41_RS01645 - TIGR00730 family Rossman fold protein, at 331,162 to 331,740
_RS01645
ABIE41_RS01650: ABIE41_RS01650 - acetamidase/formamidase family protein, at 331,894 to 332,835
_RS01650
ABIE41_RS01655: ABIE41_RS01655 - MucR family transcriptional regulator, at 332,905 to 333,354
_RS01655
ABIE41_RS01660: ABIE41_RS01660 - hypothetical protein, at 333,556 to 335,352
_RS01660
Position (kb) 331
332
333 Strain fitness (log2 ratio) -2
-1
0
1
2 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.951 kb on + strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 330.952 kb on - strand, within ABIE41_RS01640 at 331.163 kb on + strand at 331.164 kb on - strand at 331.164 kb on - strand at 331.313 kb on + strand, within ABIE41_RS01645 at 331.314 kb on - strand, within ABIE41_RS01645 at 331.314 kb on - strand, within ABIE41_RS01645 at 331.314 kb on - strand, within ABIE41_RS01645 at 331.314 kb on - strand, within ABIE41_RS01645 at 331.314 kb on - strand, within ABIE41_RS01645 at 331.316 kb on + strand, within ABIE41_RS01645 at 331.317 kb on - strand, within ABIE41_RS01645 at 331.602 kb on + strand, within ABIE41_RS01645 at 331.602 kb on + strand, within ABIE41_RS01645 at 331.602 kb on + strand, within ABIE41_RS01645 at 331.603 kb on - strand, within ABIE41_RS01645 at 331.617 kb on - strand, within ABIE41_RS01645 at 331.617 kb on - strand, within ABIE41_RS01645 at 331.830 kb on + strand at 331.830 kb on + strand at 331.830 kb on + strand at 331.830 kb on + strand at 331.831 kb on - strand at 331.831 kb on - strand at 331.831 kb on - strand at 331.831 kb on - strand at 331.831 kb on - strand at 331.940 kb on - strand at 331.940 kb on - strand at 332.106 kb on + strand, within ABIE41_RS01650 at 332.107 kb on - strand, within ABIE41_RS01650 at 332.200 kb on + strand, within ABIE41_RS01650 at 332.200 kb on + strand, within ABIE41_RS01650 at 332.200 kb on + strand, within ABIE41_RS01650 at 332.200 kb on + strand, within ABIE41_RS01650 at 332.201 kb on - strand, within ABIE41_RS01650 at 332.201 kb on - strand, within ABIE41_RS01650 at 332.201 kb on - strand, within ABIE41_RS01650 at 332.201 kb on - strand, within ABIE41_RS01650 at 332.201 kb on - strand, within ABIE41_RS01650 at 332.449 kb on + strand, within ABIE41_RS01650 at 332.449 kb on + strand, within ABIE41_RS01650 at 332.450 kb on - strand, within ABIE41_RS01650 at 332.450 kb on - strand, within ABIE41_RS01650 at 332.556 kb on + strand, within ABIE41_RS01650 at 332.556 kb on + strand, within ABIE41_RS01650 at 332.557 kb on - strand, within ABIE41_RS01650 at 332.557 kb on - strand, within ABIE41_RS01650 at 332.557 kb on - strand, within ABIE41_RS01650 at 332.557 kb on - strand, within ABIE41_RS01650 at 332.557 kb on - strand, within ABIE41_RS01650 at 332.597 kb on - strand, within ABIE41_RS01650 at 332.732 kb on - strand, within ABIE41_RS01650 at 332.732 kb on - strand, within ABIE41_RS01650 at 333.011 kb on + strand, within ABIE41_RS01655 at 333.083 kb on + strand, within ABIE41_RS01655 at 333.083 kb on + strand, within ABIE41_RS01655 at 333.083 kb on + strand, within ABIE41_RS01655 at 333.083 kb on + strand, within ABIE41_RS01655 at 333.083 kb on + strand, within ABIE41_RS01655 at 333.084 kb on - strand, within ABIE41_RS01655 at 333.084 kb on - strand, within ABIE41_RS01655 at 333.084 kb on - strand, within ABIE41_RS01655 at 333.084 kb on - strand, within ABIE41_RS01655 at 333.084 kb on - strand, within ABIE41_RS01655 at 333.084 kb on - strand, within ABIE41_RS01655 at 333.410 kb on - strand at 333.686 kb on + strand at 333.686 kb on + strand at 333.686 kb on + strand at 333.686 kb on + strand at 333.687 kb on - strand at 333.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 330,951 + ABIE41_RS01640 0.75 -0.6 330,951 + ABIE41_RS01640 0.75 -1.2 330,951 + ABIE41_RS01640 0.75 +1.8 330,951 + ABIE41_RS01640 0.75 -1.6 330,951 + ABIE41_RS01640 0.75 +1.0 330,951 + ABIE41_RS01640 0.75 +0.3 330,951 + ABIE41_RS01640 0.75 -0.0 330,951 + ABIE41_RS01640 0.75 +0.7 330,951 + ABIE41_RS01640 0.75 -0.0 330,951 + ABIE41_RS01640 0.75 -1.2 330,952 - ABIE41_RS01640 0.75 +0.4 330,952 - ABIE41_RS01640 0.75 -0.8 330,952 - ABIE41_RS01640 0.75 -0.3 330,952 - ABIE41_RS01640 0.75 -0.7 330,952 - ABIE41_RS01640 0.75 -0.3 330,952 - ABIE41_RS01640 0.75 +0.5 330,952 - ABIE41_RS01640 0.75 -0.2 330,952 - ABIE41_RS01640 0.75 -1.2 331,163 + -0.0 331,164 - +0.5 331,164 - +1.6 331,313 + ABIE41_RS01645 0.26 +0.5 331,314 - ABIE41_RS01645 0.26 -0.2 331,314 - ABIE41_RS01645 0.26 +1.5 331,314 - ABIE41_RS01645 0.26 +0.5 331,314 - ABIE41_RS01645 0.26 -0.6 331,314 - ABIE41_RS01645 0.26 -0.7 331,316 + ABIE41_RS01645 0.27 +2.0 331,317 - ABIE41_RS01645 0.27 +0.2 331,602 + ABIE41_RS01645 0.76 +0.5 331,602 + ABIE41_RS01645 0.76 +0.7 331,602 + ABIE41_RS01645 0.76 -1.3 331,603 - ABIE41_RS01645 0.76 -0.3 331,617 - ABIE41_RS01645 0.79 -0.3 331,617 - ABIE41_RS01645 0.79 +0.2 331,830 + +0.5 331,830 + -0.8 331,830 + +0.2 331,830 + -0.3 331,831 - -0.6 331,831 - -1.9 331,831 - +1.4 331,831 - +1.0 331,831 - +2.0 331,940 - -0.1 331,940 - -1.0 332,106 + ABIE41_RS01650 0.23 +0.4 332,107 - ABIE41_RS01650 0.23 -0.9 332,200 + ABIE41_RS01650 0.32 -0.6 332,200 + ABIE41_RS01650 0.32 -1.6 332,200 + ABIE41_RS01650 0.32 -1.5 332,200 + ABIE41_RS01650 0.32 +0.2 332,201 - ABIE41_RS01650 0.33 +0.6 332,201 - ABIE41_RS01650 0.33 -1.2 332,201 - ABIE41_RS01650 0.33 +0.5 332,201 - ABIE41_RS01650 0.33 +0.3 332,201 - ABIE41_RS01650 0.33 -0.4 332,449 + ABIE41_RS01650 0.59 -0.2 332,449 + ABIE41_RS01650 0.59 +0.5 332,450 - ABIE41_RS01650 0.59 +0.3 332,450 - ABIE41_RS01650 0.59 +1.6 332,556 + ABIE41_RS01650 0.70 -0.2 332,556 + ABIE41_RS01650 0.70 +0.1 332,557 - ABIE41_RS01650 0.70 -1.8 332,557 - ABIE41_RS01650 0.70 -0.0 332,557 - ABIE41_RS01650 0.70 +0.2 332,557 - ABIE41_RS01650 0.70 +0.1 332,557 - ABIE41_RS01650 0.70 +0.5 332,597 - ABIE41_RS01650 0.75 -0.2 332,732 - ABIE41_RS01650 0.89 -0.1 332,732 - ABIE41_RS01650 0.89 -0.0 333,011 + ABIE41_RS01655 0.24 -2.3 333,083 + ABIE41_RS01655 0.40 -0.0 333,083 + ABIE41_RS01655 0.40 -0.1 333,083 + ABIE41_RS01655 0.40 +1.2 333,083 + ABIE41_RS01655 0.40 +0.0 333,083 + ABIE41_RS01655 0.40 -0.3 333,084 - ABIE41_RS01655 0.40 +2.0 333,084 - ABIE41_RS01655 0.40 -1.5 333,084 - ABIE41_RS01655 0.40 +0.0 333,084 - ABIE41_RS01655 0.40 -2.0 333,084 - ABIE41_RS01655 0.40 -0.9 333,084 - ABIE41_RS01655 0.40 -2.2 333,410 - +0.1 333,686 + -1.6 333,686 + -0.6 333,686 + -0.0 333,686 + +0.3 333,687 - +0.1 333,687 - -1.1
Or see this region's nucleotide sequence