Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00490 and ABIE41_RS00495 are separated by 151 nucleotides ABIE41_RS00495 and ABIE41_RS00500 are separated by 60 nucleotides ABIE41_RS00500 and ABIE41_RS00505 are separated by 19 nucleotides
ABIE41_RS00490: ABIE41_RS00490 - PAS domain-containing protein, at 86,227 to 87,321
_RS00490
ABIE41_RS00495: ABIE41_RS00495 - transposase, at 87,473 to 87,685
_RS00495
ABIE41_RS00500: ABIE41_RS00500 - response regulator, at 87,746 to 89,423
_RS00500
ABIE41_RS00505: ABIE41_RS00505 - HAMP domain-containing protein, at 89,443 to 95,790
_RS00505
Position (kb) 87
88
89
90 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 86.981 kb on + strand, within ABIE41_RS00490 at 86.981 kb on + strand, within ABIE41_RS00490 at 86.981 kb on + strand, within ABIE41_RS00490 at 87.017 kb on + strand, within ABIE41_RS00490 at 87.017 kb on + strand, within ABIE41_RS00490 at 87.018 kb on - strand, within ABIE41_RS00490 at 87.316 kb on + strand at 87.428 kb on + strand at 87.428 kb on + strand at 87.428 kb on + strand at 87.430 kb on - strand at 87.445 kb on - strand at 87.500 kb on + strand, within ABIE41_RS00495 at 87.501 kb on - strand, within ABIE41_RS00495 at 87.501 kb on - strand, within ABIE41_RS00495 at 87.539 kb on + strand, within ABIE41_RS00495 at 87.539 kb on + strand, within ABIE41_RS00495 at 87.539 kb on + strand, within ABIE41_RS00495 at 87.539 kb on + strand, within ABIE41_RS00495 at 87.539 kb on + strand, within ABIE41_RS00495 at 87.540 kb on - strand, within ABIE41_RS00495 at 87.540 kb on - strand, within ABIE41_RS00495 at 87.540 kb on - strand, within ABIE41_RS00495 at 87.540 kb on - strand, within ABIE41_RS00495 at 87.540 kb on - strand, within ABIE41_RS00495 at 87.540 kb on - strand, within ABIE41_RS00495 at 87.588 kb on + strand, within ABIE41_RS00495 at 87.589 kb on - strand, within ABIE41_RS00495 at 87.589 kb on - strand, within ABIE41_RS00495 at 87.589 kb on - strand, within ABIE41_RS00495 at 87.602 kb on + strand, within ABIE41_RS00495 at 87.602 kb on + strand, within ABIE41_RS00495 at 87.602 kb on + strand, within ABIE41_RS00495 at 87.714 kb on + strand at 87.715 kb on - strand at 87.727 kb on + strand at 87.727 kb on + strand at 87.727 kb on + strand at 87.728 kb on - strand at 87.728 kb on - strand at 87.728 kb on - strand at 87.728 kb on - strand at 87.821 kb on + strand at 87.821 kb on + strand at 87.821 kb on + strand at 87.821 kb on + strand at 87.822 kb on - strand at 87.822 kb on - strand at 87.822 kb on - strand at 87.858 kb on + strand at 87.859 kb on - strand at 88.021 kb on + strand, within ABIE41_RS00500 at 88.021 kb on + strand, within ABIE41_RS00500 at 88.022 kb on - strand, within ABIE41_RS00500 at 88.022 kb on - strand, within ABIE41_RS00500 at 88.094 kb on + strand, within ABIE41_RS00500 at 88.095 kb on - strand, within ABIE41_RS00500 at 88.095 kb on - strand, within ABIE41_RS00500 at 88.095 kb on - strand, within ABIE41_RS00500 at 88.382 kb on - strand, within ABIE41_RS00500 at 88.389 kb on + strand, within ABIE41_RS00500 at 88.389 kb on + strand, within ABIE41_RS00500 at 88.389 kb on + strand, within ABIE41_RS00500 at 88.389 kb on + strand, within ABIE41_RS00500 at 88.389 kb on + strand, within ABIE41_RS00500 at 88.389 kb on + strand, within ABIE41_RS00500 at 88.389 kb on + strand, within ABIE41_RS00500 at 88.390 kb on - strand, within ABIE41_RS00500 at 88.390 kb on - strand, within ABIE41_RS00500 at 88.390 kb on - strand, within ABIE41_RS00500 at 88.390 kb on - strand, within ABIE41_RS00500 at 88.390 kb on - strand, within ABIE41_RS00500 at 88.390 kb on - strand, within ABIE41_RS00500 at 88.390 kb on - strand, within ABIE41_RS00500 at 88.390 kb on - strand, within ABIE41_RS00500 at 88.390 kb on - strand, within ABIE41_RS00500 at 88.390 kb on - strand, within ABIE41_RS00500 at 88.390 kb on - strand, within ABIE41_RS00500 at 88.403 kb on + strand, within ABIE41_RS00500 at 88.404 kb on - strand, within ABIE41_RS00500 at 88.404 kb on - strand, within ABIE41_RS00500 at 88.404 kb on - strand, within ABIE41_RS00500 at 88.404 kb on - strand, within ABIE41_RS00500 at 88.404 kb on - strand, within ABIE41_RS00500 at 88.404 kb on - strand, within ABIE41_RS00500 at 88.404 kb on - strand, within ABIE41_RS00500 at 88.456 kb on + strand, within ABIE41_RS00500 at 88.457 kb on - strand, within ABIE41_RS00500 at 88.627 kb on + strand, within ABIE41_RS00500 at 88.627 kb on + strand, within ABIE41_RS00500 at 88.627 kb on + strand, within ABIE41_RS00500 at 88.627 kb on + strand, within ABIE41_RS00500 at 88.628 kb on - strand, within ABIE41_RS00500 at 88.643 kb on + strand, within ABIE41_RS00500 at 88.644 kb on - strand, within ABIE41_RS00500 at 88.698 kb on - strand, within ABIE41_RS00500 at 88.858 kb on + strand, within ABIE41_RS00500 at 88.859 kb on - strand, within ABIE41_RS00500 at 88.859 kb on - strand, within ABIE41_RS00500 at 88.859 kb on - strand, within ABIE41_RS00500 at 89.085 kb on + strand, within ABIE41_RS00500 at 89.085 kb on + strand, within ABIE41_RS00500 at 89.085 kb on + strand, within ABIE41_RS00500 at 89.086 kb on - strand, within ABIE41_RS00500 at 89.086 kb on - strand, within ABIE41_RS00500 at 89.109 kb on + strand, within ABIE41_RS00500 at 89.109 kb on + strand, within ABIE41_RS00500 at 89.109 kb on + strand, within ABIE41_RS00500 at 89.113 kb on + strand, within ABIE41_RS00500 at 89.113 kb on + strand, within ABIE41_RS00500 at 89.113 kb on + strand, within ABIE41_RS00500 at 89.113 kb on + strand, within ABIE41_RS00500 at 89.113 kb on + strand, within ABIE41_RS00500 at 89.114 kb on - strand, within ABIE41_RS00500 at 89.114 kb on - strand, within ABIE41_RS00500 at 89.114 kb on - strand, within ABIE41_RS00500 at 89.114 kb on - strand, within ABIE41_RS00500 at 89.114 kb on - strand, within ABIE41_RS00500 at 89.135 kb on - strand, within ABIE41_RS00500 at 89.135 kb on - strand, within ABIE41_RS00500 at 89.135 kb on - strand, within ABIE41_RS00500 at 89.135 kb on - strand, within ABIE41_RS00500 at 89.135 kb on - strand, within ABIE41_RS00500 at 89.222 kb on + strand, within ABIE41_RS00500 at 89.222 kb on + strand, within ABIE41_RS00500 at 89.222 kb on + strand, within ABIE41_RS00500 at 89.333 kb on + strand at 89.333 kb on + strand at 89.333 kb on + strand at 89.334 kb on - strand at 89.334 kb on - strand at 89.369 kb on - strand at 89.369 kb on - strand at 89.369 kb on - strand at 89.369 kb on - strand at 89.408 kb on + strand at 89.452 kb on + strand at 89.452 kb on + strand at 89.452 kb on + strand at 89.473 kb on + strand at 89.474 kb on - strand at 89.507 kb on + strand at 89.507 kb on + strand at 89.565 kb on + strand at 89.627 kb on + strand at 89.628 kb on - strand at 89.628 kb on - strand at 89.628 kb on - strand at 89.628 kb on - strand at 89.652 kb on + strand at 89.653 kb on - strand at 89.653 kb on - strand at 89.850 kb on + strand at 89.850 kb on + strand at 89.850 kb on + strand at 89.850 kb on + strand at 89.850 kb on + strand at 89.850 kb on + strand at 89.851 kb on - strand at 89.851 kb on - strand at 89.851 kb on - strand at 89.851 kb on - strand at 89.851 kb on - strand at 89.952 kb on + strand at 89.952 kb on + strand at 89.952 kb on + strand at 89.952 kb on + strand at 89.952 kb on + strand at 89.952 kb on + strand at 89.952 kb on + strand at 89.952 kb on + strand at 89.953 kb on - strand at 89.953 kb on - strand at 89.953 kb on - strand at 89.953 kb on - strand at 89.953 kb on - strand at 89.953 kb on - strand at 90.061 kb on + strand at 90.062 kb on - strand at 90.062 kb on - strand at 90.078 kb on + strand, within ABIE41_RS00505 at 90.078 kb on + strand, within ABIE41_RS00505 at 90.078 kb on + strand, within ABIE41_RS00505 at 90.078 kb on + strand, within ABIE41_RS00505 at 90.078 kb on + strand, within ABIE41_RS00505 at 90.078 kb on + strand, within ABIE41_RS00505 at 90.079 kb on - strand, within ABIE41_RS00505 at 90.079 kb on - strand, within ABIE41_RS00505 at 90.229 kb on + strand, within ABIE41_RS00505 at 90.229 kb on + strand, within ABIE41_RS00505 at 90.229 kb on + strand, within ABIE41_RS00505 at 90.229 kb on + strand, within ABIE41_RS00505 at 90.230 kb on - strand, within ABIE41_RS00505 at 90.237 kb on + strand, within ABIE41_RS00505 at 90.238 kb on + strand, within ABIE41_RS00505 at 90.239 kb on - strand, within ABIE41_RS00505 at 90.239 kb on - strand, within ABIE41_RS00505 at 90.239 kb on - strand, within ABIE41_RS00505 at 90.239 kb on - strand, within ABIE41_RS00505 at 90.263 kb on + strand, within ABIE41_RS00505 at 90.264 kb on - strand, within ABIE41_RS00505 at 90.264 kb on - strand, within ABIE41_RS00505 at 90.264 kb on - strand, within ABIE41_RS00505 at 90.264 kb on - strand, within ABIE41_RS00505 at 90.388 kb on + strand, within ABIE41_RS00505 at 90.388 kb on + strand, within ABIE41_RS00505 at 90.388 kb on + strand, within ABIE41_RS00505 at 90.388 kb on + strand, within ABIE41_RS00505 at 90.388 kb on + strand, within ABIE41_RS00505 at 90.389 kb on - strand, within ABIE41_RS00505 at 90.389 kb on - strand, within ABIE41_RS00505 at 90.389 kb on - strand, within ABIE41_RS00505 at 90.414 kb on + strand, within ABIE41_RS00505 at 90.414 kb on + strand, within ABIE41_RS00505 at 90.414 kb on + strand, within ABIE41_RS00505 at 90.414 kb on + strand, within ABIE41_RS00505 at 90.414 kb on + strand, within ABIE41_RS00505 at 90.414 kb on + strand, within ABIE41_RS00505 at 90.415 kb on - strand, within ABIE41_RS00505
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 86,981 + ABIE41_RS00490 0.69 +0.6 86,981 + ABIE41_RS00490 0.69 +0.1 86,981 + ABIE41_RS00490 0.69 -0.3 87,017 + ABIE41_RS00490 0.72 -0.3 87,017 + ABIE41_RS00490 0.72 -0.1 87,018 - ABIE41_RS00490 0.72 -0.3 87,316 + -0.0 87,428 + +1.0 87,428 + -2.2 87,428 + +0.2 87,430 - -0.6 87,445 - -0.1 87,500 + ABIE41_RS00495 0.13 +0.3 87,501 - ABIE41_RS00495 0.13 -0.3 87,501 - ABIE41_RS00495 0.13 -0.1 87,539 + ABIE41_RS00495 0.31 +0.8 87,539 + ABIE41_RS00495 0.31 +0.1 87,539 + ABIE41_RS00495 0.31 -1.0 87,539 + ABIE41_RS00495 0.31 -2.3 87,539 + ABIE41_RS00495 0.31 -1.8 87,540 - ABIE41_RS00495 0.31 -0.6 87,540 - ABIE41_RS00495 0.31 -0.9 87,540 - ABIE41_RS00495 0.31 +0.9 87,540 - ABIE41_RS00495 0.31 -0.3 87,540 - ABIE41_RS00495 0.31 -0.8 87,540 - ABIE41_RS00495 0.31 -0.1 87,588 + ABIE41_RS00495 0.54 -0.9 87,589 - ABIE41_RS00495 0.54 +0.7 87,589 - ABIE41_RS00495 0.54 -0.8 87,589 - ABIE41_RS00495 0.54 -0.1 87,602 + ABIE41_RS00495 0.61 +0.5 87,602 + ABIE41_RS00495 0.61 +0.4 87,602 + ABIE41_RS00495 0.61 -1.2 87,714 + +0.5 87,715 - +0.1 87,727 + -1.3 87,727 + +0.4 87,727 + +0.6 87,728 - -0.2 87,728 - -1.7 87,728 - +1.7 87,728 - +0.3 87,821 + -0.2 87,821 + -0.3 87,821 + +0.3 87,821 + +0.4 87,822 - +0.4 87,822 - +1.0 87,822 - +0.4 87,858 + -0.8 87,859 - -0.0 88,021 + ABIE41_RS00500 0.16 +0.1 88,021 + ABIE41_RS00500 0.16 +0.6 88,022 - ABIE41_RS00500 0.16 +0.6 88,022 - ABIE41_RS00500 0.16 +2.2 88,094 + ABIE41_RS00500 0.21 -0.4 88,095 - ABIE41_RS00500 0.21 -0.8 88,095 - ABIE41_RS00500 0.21 +1.1 88,095 - ABIE41_RS00500 0.21 +0.1 88,382 - ABIE41_RS00500 0.38 -0.5 88,389 + ABIE41_RS00500 0.38 +0.1 88,389 + ABIE41_RS00500 0.38 +0.5 88,389 + ABIE41_RS00500 0.38 -0.5 88,389 + ABIE41_RS00500 0.38 +0.5 88,389 + ABIE41_RS00500 0.38 -0.0 88,389 + ABIE41_RS00500 0.38 +2.0 88,389 + ABIE41_RS00500 0.38 +0.3 88,390 - ABIE41_RS00500 0.38 -0.4 88,390 - ABIE41_RS00500 0.38 +0.1 88,390 - ABIE41_RS00500 0.38 -0.2 88,390 - ABIE41_RS00500 0.38 -0.7 88,390 - ABIE41_RS00500 0.38 -0.0 88,390 - ABIE41_RS00500 0.38 -1.4 88,390 - ABIE41_RS00500 0.38 +0.4 88,390 - ABIE41_RS00500 0.38 -0.6 88,390 - ABIE41_RS00500 0.38 -0.4 88,390 - ABIE41_RS00500 0.38 +0.3 88,390 - ABIE41_RS00500 0.38 +0.3 88,403 + ABIE41_RS00500 0.39 -0.6 88,404 - ABIE41_RS00500 0.39 +0.8 88,404 - ABIE41_RS00500 0.39 -0.3 88,404 - ABIE41_RS00500 0.39 +0.2 88,404 - ABIE41_RS00500 0.39 +0.1 88,404 - ABIE41_RS00500 0.39 -0.1 88,404 - ABIE41_RS00500 0.39 +0.1 88,404 - ABIE41_RS00500 0.39 +0.1 88,456 + ABIE41_RS00500 0.42 +0.3 88,457 - ABIE41_RS00500 0.42 +0.5 88,627 + ABIE41_RS00500 0.53 +0.6 88,627 + ABIE41_RS00500 0.53 -1.2 88,627 + ABIE41_RS00500 0.53 -0.1 88,627 + ABIE41_RS00500 0.53 +0.3 88,628 - ABIE41_RS00500 0.53 -0.3 88,643 + ABIE41_RS00500 0.53 +1.3 88,644 - ABIE41_RS00500 0.54 +0.1 88,698 - ABIE41_RS00500 0.57 -0.4 88,858 + ABIE41_RS00500 0.66 -0.6 88,859 - ABIE41_RS00500 0.66 +0.2 88,859 - ABIE41_RS00500 0.66 +3.0 88,859 - ABIE41_RS00500 0.66 -0.4 89,085 + ABIE41_RS00500 0.80 +1.0 89,085 + ABIE41_RS00500 0.80 -0.3 89,085 + ABIE41_RS00500 0.80 +0.7 89,086 - ABIE41_RS00500 0.80 -0.1 89,086 - ABIE41_RS00500 0.80 -1.5 89,109 + ABIE41_RS00500 0.81 -2.5 89,109 + ABIE41_RS00500 0.81 +0.5 89,109 + ABIE41_RS00500 0.81 +0.1 89,113 + ABIE41_RS00500 0.81 +3.4 89,113 + ABIE41_RS00500 0.81 +0.1 89,113 + ABIE41_RS00500 0.81 -0.1 89,113 + ABIE41_RS00500 0.81 -1.9 89,113 + ABIE41_RS00500 0.81 +0.1 89,114 - ABIE41_RS00500 0.82 -0.8 89,114 - ABIE41_RS00500 0.82 +0.7 89,114 - ABIE41_RS00500 0.82 +0.1 89,114 - ABIE41_RS00500 0.82 -0.3 89,114 - ABIE41_RS00500 0.82 -0.2 89,135 - ABIE41_RS00500 0.83 -0.5 89,135 - ABIE41_RS00500 0.83 -0.1 89,135 - ABIE41_RS00500 0.83 -0.9 89,135 - ABIE41_RS00500 0.83 -0.1 89,135 - ABIE41_RS00500 0.83 -0.0 89,222 + ABIE41_RS00500 0.88 -0.0 89,222 + ABIE41_RS00500 0.88 -0.2 89,222 + ABIE41_RS00500 0.88 +0.8 89,333 + -0.4 89,333 + -0.9 89,333 + -0.2 89,334 - +0.4 89,334 - -0.7 89,369 - -1.4 89,369 - +0.2 89,369 - -0.1 89,369 - +1.2 89,408 + +0.2 89,452 + -2.0 89,452 + -0.5 89,452 + +1.8 89,473 + +0.8 89,474 - +0.2 89,507 + +1.0 89,507 + -0.6 89,565 + +0.4 89,627 + -0.2 89,628 - -0.3 89,628 - -1.9 89,628 - -1.9 89,628 - +0.3 89,652 + -0.2 89,653 - +0.4 89,653 - -0.2 89,850 + +0.4 89,850 + -0.1 89,850 + +0.4 89,850 + +0.4 89,850 + -0.8 89,850 + -0.1 89,851 - -1.4 89,851 - -0.3 89,851 - -0.8 89,851 - -1.7 89,851 - -2.0 89,952 + -0.7 89,952 + +0.4 89,952 + +0.0 89,952 + -0.3 89,952 + +0.1 89,952 + +0.3 89,952 + -0.1 89,952 + -0.2 89,953 - +1.0 89,953 - +0.0 89,953 - +0.2 89,953 - +1.8 89,953 - -0.3 89,953 - -0.4 90,061 + +0.6 90,062 - -1.1 90,062 - -2.5 90,078 + ABIE41_RS00505 0.10 +1.6 90,078 + ABIE41_RS00505 0.10 -0.6 90,078 + ABIE41_RS00505 0.10 -0.2 90,078 + ABIE41_RS00505 0.10 +0.3 90,078 + ABIE41_RS00505 0.10 +0.7 90,078 + ABIE41_RS00505 0.10 +0.2 90,079 - ABIE41_RS00505 0.10 -0.5 90,079 - ABIE41_RS00505 0.10 +0.5 90,229 + ABIE41_RS00505 0.12 -0.2 90,229 + ABIE41_RS00505 0.12 +0.5 90,229 + ABIE41_RS00505 0.12 +1.2 90,229 + ABIE41_RS00505 0.12 -1.6 90,230 - ABIE41_RS00505 0.12 +0.2 90,237 + ABIE41_RS00505 0.13 +0.4 90,238 + ABIE41_RS00505 0.13 -0.6 90,239 - ABIE41_RS00505 0.13 -0.8 90,239 - ABIE41_RS00505 0.13 -0.4 90,239 - ABIE41_RS00505 0.13 +1.2 90,239 - ABIE41_RS00505 0.13 -2.6 90,263 + ABIE41_RS00505 0.13 +0.5 90,264 - ABIE41_RS00505 0.13 +0.3 90,264 - ABIE41_RS00505 0.13 -1.8 90,264 - ABIE41_RS00505 0.13 -0.2 90,264 - ABIE41_RS00505 0.13 -0.6 90,388 + ABIE41_RS00505 0.15 +0.4 90,388 + ABIE41_RS00505 0.15 -0.4 90,388 + ABIE41_RS00505 0.15 -1.6 90,388 + ABIE41_RS00505 0.15 -0.5 90,388 + ABIE41_RS00505 0.15 -1.9 90,389 - ABIE41_RS00505 0.15 -0.2 90,389 - ABIE41_RS00505 0.15 +0.1 90,389 - ABIE41_RS00505 0.15 -1.7 90,414 + ABIE41_RS00505 0.15 -0.8 90,414 + ABIE41_RS00505 0.15 +1.1 90,414 + ABIE41_RS00505 0.15 -0.7 90,414 + ABIE41_RS00505 0.15 -2.3 90,414 + ABIE41_RS00505 0.15 +0.1 90,414 + ABIE41_RS00505 0.15 -0.6 90,415 - ABIE41_RS00505 0.15 +1.0
Or see this region's nucleotide sequence