Strain Fitness in Bosea sp. OAE506 around ABIE41_RS00480

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS00475 and ABIE41_RS00480 are separated by 8 nucleotidesABIE41_RS00480 and ABIE41_RS00485 overlap by 61 nucleotidesABIE41_RS00485 and ABIE41_RS00490 are separated by 28 nucleotides ABIE41_RS00475: ABIE41_RS00475 - SAVED domain-containing protein, at 84,563 to 85,243 _RS00475 ABIE41_RS00480: ABIE41_RS00480 - ATP-binding protein, at 85,252 to 85,830 _RS00480 ABIE41_RS00485: ABIE41_RS00485 - response regulator, at 85,770 to 86,198 _RS00485 ABIE41_RS00490: ABIE41_RS00490 - PAS domain-containing protein, at 86,227 to 87,321 _RS00490 Position (kb) 85 86Strain fitness (log2 ratio) -2 -1 0 1 2 3at 84.369 kb on + strandat 84.370 kb on - strandat 84.370 kb on - strandat 84.453 kb on + strandat 84.453 kb on + strandat 84.453 kb on + strandat 84.453 kb on + strandat 84.453 kb on + strandat 84.454 kb on - strandat 84.454 kb on - strandat 84.463 kb on + strandat 84.464 kb on - strandat 84.464 kb on - strandat 84.464 kb on - strandat 84.517 kb on + strandat 84.517 kb on + strandat 84.517 kb on + strandat 84.550 kb on - strandat 84.550 kb on - strandat 84.550 kb on - strandat 84.550 kb on - strandat 84.550 kb on - strandat 84.550 kb on - strandat 84.671 kb on + strand, within ABIE41_RS00475at 84.671 kb on + strand, within ABIE41_RS00475at 84.671 kb on + strand, within ABIE41_RS00475at 84.672 kb on - strand, within ABIE41_RS00475at 84.672 kb on - strand, within ABIE41_RS00475at 84.672 kb on - strand, within ABIE41_RS00475at 84.779 kb on + strand, within ABIE41_RS00475at 84.780 kb on - strand, within ABIE41_RS00475at 84.791 kb on + strand, within ABIE41_RS00475at 84.861 kb on + strand, within ABIE41_RS00475at 84.861 kb on + strand, within ABIE41_RS00475at 84.861 kb on + strand, within ABIE41_RS00475at 84.862 kb on - strand, within ABIE41_RS00475at 84.927 kb on + strand, within ABIE41_RS00475at 84.953 kb on + strand, within ABIE41_RS00475at 84.953 kb on + strand, within ABIE41_RS00475at 84.953 kb on + strand, within ABIE41_RS00475at 84.953 kb on + strand, within ABIE41_RS00475at 84.953 kb on + strand, within ABIE41_RS00475at 84.953 kb on + strand, within ABIE41_RS00475at 84.953 kb on + strand, within ABIE41_RS00475at 84.953 kb on + strand, within ABIE41_RS00475at 84.953 kb on + strand, within ABIE41_RS00475at 84.954 kb on - strand, within ABIE41_RS00475at 84.954 kb on - strand, within ABIE41_RS00475at 84.954 kb on - strand, within ABIE41_RS00475at 84.954 kb on - strand, within ABIE41_RS00475at 84.954 kb on - strand, within ABIE41_RS00475at 84.954 kb on - strand, within ABIE41_RS00475at 84.954 kb on - strand, within ABIE41_RS00475at 84.955 kb on + strand, within ABIE41_RS00475at 84.955 kb on + strand, within ABIE41_RS00475at 84.955 kb on + strand, within ABIE41_RS00475at 84.955 kb on + strand, within ABIE41_RS00475at 84.956 kb on - strand, within ABIE41_RS00475at 84.956 kb on - strand, within ABIE41_RS00475at 84.956 kb on - strand, within ABIE41_RS00475at 84.956 kb on - strand, within ABIE41_RS00475at 84.956 kb on - strand, within ABIE41_RS00475at 85.102 kb on - strand, within ABIE41_RS00475at 85.122 kb on + strand, within ABIE41_RS00475at 85.123 kb on - strand, within ABIE41_RS00475at 85.123 kb on - strand, within ABIE41_RS00475at 85.123 kb on - strand, within ABIE41_RS00475at 85.271 kb on - strandat 85.377 kb on - strand, within ABIE41_RS00480at 85.398 kb on + strand, within ABIE41_RS00480at 85.399 kb on - strand, within ABIE41_RS00480at 85.399 kb on - strand, within ABIE41_RS00480at 85.431 kb on + strand, within ABIE41_RS00480at 85.432 kb on - strand, within ABIE41_RS00480at 85.432 kb on - strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.479 kb on + strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.480 kb on - strand, within ABIE41_RS00480at 85.586 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.588 kb on + strand, within ABIE41_RS00480at 85.589 kb on - strand, within ABIE41_RS00480at 85.589 kb on - strand, within ABIE41_RS00480at 85.589 kb on - strand, within ABIE41_RS00480at 85.593 kb on + strand, within ABIE41_RS00480at 85.593 kb on + strand, within ABIE41_RS00480at 85.593 kb on + strand, within ABIE41_RS00480at 85.594 kb on - strand, within ABIE41_RS00480at 85.594 kb on - strand, within ABIE41_RS00480at 85.594 kb on - strand, within ABIE41_RS00480at 85.594 kb on - strand, within ABIE41_RS00480at 85.594 kb on - strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.661 kb on + strand, within ABIE41_RS00480at 85.662 kb on - strand, within ABIE41_RS00480at 85.662 kb on - strand, within ABIE41_RS00480at 85.867 kb on + strand, within ABIE41_RS00485at 85.867 kb on + strand, within ABIE41_RS00485at 85.867 kb on + strand, within ABIE41_RS00485at 85.868 kb on - strand, within ABIE41_RS00485at 85.868 kb on - strand, within ABIE41_RS00485at 85.868 kb on - strand, within ABIE41_RS00485at 85.868 kb on - strand, within ABIE41_RS00485at 85.969 kb on + strand, within ABIE41_RS00485at 85.969 kb on + strand, within ABIE41_RS00485at 85.969 kb on + strand, within ABIE41_RS00485at 85.970 kb on - strand, within ABIE41_RS00485at 85.970 kb on - strand, within ABIE41_RS00485at 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.228 kb on + strandat 86.229 kb on - strandat 86.229 kb on - strandat 86.229 kb on - strandat 86.229 kb on - strandat 86.229 kb on - strandat 86.292 kb on + strandat 86.293 kb on - strandat 86.391 kb on + strand, within ABIE41_RS00490at 86.391 kb on + strand, within ABIE41_RS00490at 86.391 kb on + strand, within ABIE41_RS00490at 86.392 kb on - strand, within ABIE41_RS00490at 86.392 kb on - strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.393 kb on + strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490at 86.394 kb on - strand, within ABIE41_RS00490

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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84,369 + +0.3
84,370 - -0.5
84,370 - +1.1
84,453 + -2.3
84,453 + -0.1
84,453 + -0.6
84,453 + +0.6
84,453 + -0.6
84,454 - +0.9
84,454 - -0.6
84,463 + +1.0
84,464 - +0.3
84,464 - -1.8
84,464 - +0.4
84,517 + +3.3
84,517 + -0.1
84,517 + +0.4
84,550 - +0.7
84,550 - +0.7
84,550 - -1.3
84,550 - +0.5
84,550 - +0.3
84,550 - +0.1
84,671 + ABIE41_RS00475 0.16 +0.2
84,671 + ABIE41_RS00475 0.16 -0.1
84,671 + ABIE41_RS00475 0.16 +0.2
84,672 - ABIE41_RS00475 0.16 +0.4
84,672 - ABIE41_RS00475 0.16 -1.0
84,672 - ABIE41_RS00475 0.16 -0.9
84,779 + ABIE41_RS00475 0.32 +2.0
84,780 - ABIE41_RS00475 0.32 -0.0
84,791 + ABIE41_RS00475 0.33 +1.5
84,861 + ABIE41_RS00475 0.44 -0.3
84,861 + ABIE41_RS00475 0.44 +1.6
84,861 + ABIE41_RS00475 0.44 -0.2
84,862 - ABIE41_RS00475 0.44 -1.4
84,927 + ABIE41_RS00475 0.53 -0.7
84,953 + ABIE41_RS00475 0.57 +0.4
84,953 + ABIE41_RS00475 0.57 -1.6
84,953 + ABIE41_RS00475 0.57 +0.4
84,953 + ABIE41_RS00475 0.57 +2.0
84,953 + ABIE41_RS00475 0.57 -0.2
84,953 + ABIE41_RS00475 0.57 -0.0
84,953 + ABIE41_RS00475 0.57 +0.0
84,953 + ABIE41_RS00475 0.57 +1.2
84,953 + ABIE41_RS00475 0.57 +2.3
84,954 - ABIE41_RS00475 0.57 -0.0
84,954 - ABIE41_RS00475 0.57 -0.3
84,954 - ABIE41_RS00475 0.57 -1.7
84,954 - ABIE41_RS00475 0.57 -1.1
84,954 - ABIE41_RS00475 0.57 +0.2
84,954 - ABIE41_RS00475 0.57 +1.4
84,954 - ABIE41_RS00475 0.57 +0.5
84,955 + ABIE41_RS00475 0.58 -0.3
84,955 + ABIE41_RS00475 0.58 -0.5
84,955 + ABIE41_RS00475 0.58 -0.3
84,955 + ABIE41_RS00475 0.58 -0.0
84,956 - ABIE41_RS00475 0.58 -0.9
84,956 - ABIE41_RS00475 0.58 -0.0
84,956 - ABIE41_RS00475 0.58 -0.1
84,956 - ABIE41_RS00475 0.58 -0.4
84,956 - ABIE41_RS00475 0.58 -0.2
85,102 - ABIE41_RS00475 0.79 +0.5
85,122 + ABIE41_RS00475 0.82 +2.5
85,123 - ABIE41_RS00475 0.82 +0.3
85,123 - ABIE41_RS00475 0.82 +0.3
85,123 - ABIE41_RS00475 0.82 -0.3
85,271 - -0.5
85,377 - ABIE41_RS00480 0.22 -2.3
85,398 + ABIE41_RS00480 0.25 +0.2
85,399 - ABIE41_RS00480 0.25 -1.5
85,399 - ABIE41_RS00480 0.25 -0.0
85,431 + ABIE41_RS00480 0.31 -0.9
85,432 - ABIE41_RS00480 0.31 +0.0
85,432 - ABIE41_RS00480 0.31 +2.3
85,479 + ABIE41_RS00480 0.39 +0.3
85,479 + ABIE41_RS00480 0.39 -0.1
85,479 + ABIE41_RS00480 0.39 +1.7
85,479 + ABIE41_RS00480 0.39 -0.1
85,479 + ABIE41_RS00480 0.39 +1.0
85,479 + ABIE41_RS00480 0.39 +2.5
85,479 + ABIE41_RS00480 0.39 +0.9
85,480 - ABIE41_RS00480 0.39 +0.5
85,480 - ABIE41_RS00480 0.39 -0.3
85,480 - ABIE41_RS00480 0.39 +0.3
85,480 - ABIE41_RS00480 0.39 -0.3
85,480 - ABIE41_RS00480 0.39 -0.2
85,480 - ABIE41_RS00480 0.39 +0.0
85,586 + ABIE41_RS00480 0.58 +0.2
85,588 + ABIE41_RS00480 0.58 -0.5
85,588 + ABIE41_RS00480 0.58 +0.6
85,588 + ABIE41_RS00480 0.58 +0.3
85,588 + ABIE41_RS00480 0.58 -0.6
85,588 + ABIE41_RS00480 0.58 -0.1
85,588 + ABIE41_RS00480 0.58 +0.3
85,588 + ABIE41_RS00480 0.58 +0.4
85,588 + ABIE41_RS00480 0.58 -1.0
85,588 + ABIE41_RS00480 0.58 +0.2
85,588 + ABIE41_RS00480 0.58 -0.2
85,588 + ABIE41_RS00480 0.58 +0.1
85,589 - ABIE41_RS00480 0.58 -0.6
85,589 - ABIE41_RS00480 0.58 -0.0
85,589 - ABIE41_RS00480 0.58 -1.5
85,593 + ABIE41_RS00480 0.59 -0.4
85,593 + ABIE41_RS00480 0.59 +0.6
85,593 + ABIE41_RS00480 0.59 -0.1
85,594 - ABIE41_RS00480 0.59 -0.8
85,594 - ABIE41_RS00480 0.59 -0.6
85,594 - ABIE41_RS00480 0.59 -0.6
85,594 - ABIE41_RS00480 0.59 -0.9
85,594 - ABIE41_RS00480 0.59 +0.0
85,661 + ABIE41_RS00480 0.71 +0.5
85,661 + ABIE41_RS00480 0.71 -1.7
85,661 + ABIE41_RS00480 0.71 -0.1
85,661 + ABIE41_RS00480 0.71 +0.9
85,661 + ABIE41_RS00480 0.71 +0.3
85,661 + ABIE41_RS00480 0.71 -0.5
85,662 - ABIE41_RS00480 0.71 +0.0
85,662 - ABIE41_RS00480 0.71 +0.3
85,867 + ABIE41_RS00485 0.23 -0.4
85,867 + ABIE41_RS00485 0.23 +1.4
85,867 + ABIE41_RS00485 0.23 +1.2
85,868 - ABIE41_RS00485 0.23 +0.4
85,868 - ABIE41_RS00485 0.23 +0.8
85,868 - ABIE41_RS00485 0.23 -0.6
85,868 - ABIE41_RS00485 0.23 +0.6
85,969 + ABIE41_RS00485 0.46 +1.8
85,969 + ABIE41_RS00485 0.46 +0.6
85,969 + ABIE41_RS00485 0.46 +0.3
85,970 - ABIE41_RS00485 0.47 +0.2
85,970 - ABIE41_RS00485 0.47 +2.0
86,228 + +0.0
86,228 + -0.6
86,228 + +1.6
86,228 + -0.7
86,228 + +0.1
86,228 + -0.6
86,228 + -0.0
86,228 + -0.2
86,229 - -1.1
86,229 - +0.1
86,229 - +0.3
86,229 - +0.8
86,229 - +0.8
86,292 + +0.3
86,293 - +0.1
86,391 + ABIE41_RS00490 0.15 -0.7
86,391 + ABIE41_RS00490 0.15 -0.4
86,391 + ABIE41_RS00490 0.15 +0.1
86,392 - ABIE41_RS00490 0.15 -0.1
86,392 - ABIE41_RS00490 0.15 +0.3
86,393 + ABIE41_RS00490 0.15 -0.3
86,393 + ABIE41_RS00490 0.15 -0.6
86,393 + ABIE41_RS00490 0.15 -0.2
86,393 + ABIE41_RS00490 0.15 -0.3
86,393 + ABIE41_RS00490 0.15 -0.8
86,393 + ABIE41_RS00490 0.15 +0.6
86,393 + ABIE41_RS00490 0.15 -0.9
86,394 - ABIE41_RS00490 0.15 -0.1
86,394 - ABIE41_RS00490 0.15 +0.4
86,394 - ABIE41_RS00490 0.15 -0.0
86,394 - ABIE41_RS00490 0.15 +1.2
86,394 - ABIE41_RS00490 0.15 -1.5
86,394 - ABIE41_RS00490 0.15 +0.7
86,394 - ABIE41_RS00490 0.15 -1.4

Or see this region's nucleotide sequence