Experiment: p-Coumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00775 and PFR28_00776 are separated by 153 nucleotides PFR28_00776 and PFR28_00777 are separated by 54 nucleotides PFR28_00777 and PFR28_00778 are separated by 7 nucleotides
PFR28_00775: PFR28_00775 - Osmoregulated proline transporter OpuE, at 829,789 to 831,177
_00775
PFR28_00776: PFR28_00776 - hypothetical protein, at 831,331 to 832,884
_00776
PFR28_00777: PFR28_00777 - hypothetical protein, at 832,939 to 833,364
_00777
PFR28_00778: PFR28_00778 - Guanidinobutyrase, at 833,372 to 834,322
_00778
Position (kb) 831
832
833 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 830.376 kb on - strand, within PFR28_00775 at 830.387 kb on + strand, within PFR28_00775 at 830.388 kb on - strand, within PFR28_00775 at 830.486 kb on + strand, within PFR28_00775 at 830.486 kb on + strand, within PFR28_00775 at 830.486 kb on + strand, within PFR28_00775 at 830.486 kb on + strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.487 kb on - strand, within PFR28_00775 at 830.498 kb on + strand, within PFR28_00775 at 830.498 kb on + strand, within PFR28_00775 at 830.498 kb on + strand, within PFR28_00775 at 830.498 kb on + strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.499 kb on - strand, within PFR28_00775 at 830.540 kb on + strand, within PFR28_00775 at 830.541 kb on - strand, within PFR28_00775 at 830.541 kb on - strand, within PFR28_00775 at 830.541 kb on - strand, within PFR28_00775 at 830.541 kb on - strand, within PFR28_00775 at 830.541 kb on - strand, within PFR28_00775 at 830.552 kb on - strand, within PFR28_00775 at 830.690 kb on + strand, within PFR28_00775 at 830.690 kb on + strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.691 kb on - strand, within PFR28_00775 at 830.804 kb on + strand, within PFR28_00775 at 830.804 kb on + strand, within PFR28_00775 at 830.804 kb on + strand, within PFR28_00775 at 830.804 kb on + strand, within PFR28_00775 at 830.804 kb on + strand, within PFR28_00775 at 830.805 kb on - strand, within PFR28_00775 at 830.805 kb on - strand, within PFR28_00775 at 830.805 kb on - strand, within PFR28_00775 at 830.849 kb on + strand, within PFR28_00775 at 830.849 kb on + strand, within PFR28_00775 at 830.849 kb on + strand, within PFR28_00775 at 830.850 kb on - strand, within PFR28_00775 at 830.850 kb on - strand, within PFR28_00775 at 830.879 kb on + strand, within PFR28_00775 at 830.879 kb on + strand, within PFR28_00775 at 830.879 kb on + strand, within PFR28_00775 at 830.880 kb on - strand, within PFR28_00775 at 830.981 kb on + strand, within PFR28_00775 at 830.981 kb on + strand, within PFR28_00775 at 830.981 kb on + strand, within PFR28_00775 at 831.047 kb on + strand at 831.047 kb on + strand at 831.048 kb on - strand at 831.147 kb on - strand at 831.147 kb on - strand at 831.147 kb on - strand at 831.147 kb on - strand at 831.147 kb on - strand at 831.163 kb on + strand at 831.163 kb on + strand at 831.164 kb on - strand at 831.198 kb on - strand at 831.206 kb on + strand at 831.207 kb on - strand at 831.319 kb on + strand at 831.330 kb on - strand at 831.330 kb on - strand at 831.330 kb on - strand at 831.364 kb on + strand at 831.446 kb on + strand at 831.446 kb on + strand at 831.446 kb on + strand at 831.446 kb on + strand at 831.447 kb on - strand at 831.447 kb on - strand at 831.488 kb on + strand, within PFR28_00776 at 831.489 kb on - strand, within PFR28_00776 at 831.534 kb on + strand, within PFR28_00776 at 831.710 kb on + strand, within PFR28_00776 at 831.710 kb on + strand, within PFR28_00776 at 831.711 kb on - strand, within PFR28_00776 at 831.711 kb on - strand, within PFR28_00776 at 831.711 kb on - strand, within PFR28_00776 at 831.929 kb on + strand, within PFR28_00776 at 831.929 kb on + strand, within PFR28_00776 at 832.028 kb on + strand, within PFR28_00776 at 832.028 kb on + strand, within PFR28_00776 at 832.028 kb on + strand, within PFR28_00776 at 832.028 kb on + strand, within PFR28_00776 at 832.028 kb on + strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.029 kb on - strand, within PFR28_00776 at 832.046 kb on + strand, within PFR28_00776 at 832.046 kb on + strand, within PFR28_00776 at 832.046 kb on + strand, within PFR28_00776 at 832.046 kb on + strand, within PFR28_00776 at 832.047 kb on - strand, within PFR28_00776 at 832.047 kb on - strand, within PFR28_00776 at 832.159 kb on - strand, within PFR28_00776 at 832.159 kb on - strand, within PFR28_00776 at 832.159 kb on - strand, within PFR28_00776 at 832.159 kb on - strand, within PFR28_00776 at 832.159 kb on - strand, within PFR28_00776 at 832.173 kb on - strand, within PFR28_00776 at 832.394 kb on + strand, within PFR28_00776 at 832.395 kb on - strand, within PFR28_00776 at 832.395 kb on - strand, within PFR28_00776 at 832.395 kb on - strand, within PFR28_00776 at 832.433 kb on + strand, within PFR28_00776 at 832.762 kb on - strand at 832.762 kb on - strand at 832.841 kb on + strand at 832.857 kb on + strand at 832.866 kb on + strand at 832.866 kb on + strand at 832.867 kb on - strand at 832.867 kb on - strand at 832.867 kb on - strand at 832.878 kb on + strand at 832.878 kb on + strand at 832.878 kb on + strand at 832.879 kb on - strand at 832.879 kb on - strand at 832.940 kb on + strand at 832.973 kb on - strand at 832.996 kb on + strand, within PFR28_00777 at 833.014 kb on + strand, within PFR28_00777 at 833.014 kb on + strand, within PFR28_00777 at 833.014 kb on + strand, within PFR28_00777 at 833.014 kb on + strand, within PFR28_00777 at 833.014 kb on + strand, within PFR28_00777 at 833.015 kb on - strand, within PFR28_00777 at 833.015 kb on - strand, within PFR28_00777 at 833.015 kb on - strand, within PFR28_00777 at 833.015 kb on - strand, within PFR28_00777 at 833.015 kb on - strand, within PFR28_00777 at 833.109 kb on + strand, within PFR28_00777 at 833.109 kb on + strand, within PFR28_00777 at 833.110 kb on - strand, within PFR28_00777 at 833.214 kb on - strand, within PFR28_00777 at 833.288 kb on + strand, within PFR28_00777 at 833.288 kb on + strand, within PFR28_00777 at 833.288 kb on + strand, within PFR28_00777 at 833.288 kb on + strand, within PFR28_00777 at 833.289 kb on - strand, within PFR28_00777 at 833.289 kb on - strand, within PFR28_00777 at 833.289 kb on - strand, within PFR28_00777 at 833.289 kb on - strand, within PFR28_00777 at 833.412 kb on + strand at 833.412 kb on + strand at 833.412 kb on + strand at 833.413 kb on - strand at 833.413 kb on - strand at 833.564 kb on - strand, within PFR28_00778 at 833.616 kb on + strand, within PFR28_00778 at 833.616 kb on + strand, within PFR28_00778 at 833.616 kb on + strand, within PFR28_00778 at 833.743 kb on + strand, within PFR28_00778 at 833.745 kb on + strand, within PFR28_00778 at 833.746 kb on - strand, within PFR28_00778 at 833.771 kb on + strand, within PFR28_00778 at 833.772 kb on - strand, within PFR28_00778 at 833.772 kb on - strand, within PFR28_00778 at 833.881 kb on + strand, within PFR28_00778
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) remove 830,376 - PFR28_00775 0.42 +0.4 830,387 + PFR28_00775 0.43 -0.8 830,388 - PFR28_00775 0.43 -1.3 830,486 + PFR28_00775 0.50 +0.2 830,486 + PFR28_00775 0.50 +0.3 830,486 + PFR28_00775 0.50 -1.4 830,486 + PFR28_00775 0.50 -0.6 830,487 - PFR28_00775 0.50 -0.4 830,487 - PFR28_00775 0.50 -1.5 830,487 - PFR28_00775 0.50 -0.8 830,487 - PFR28_00775 0.50 -1.0 830,487 - PFR28_00775 0.50 -1.9 830,487 - PFR28_00775 0.50 -1.8 830,487 - PFR28_00775 0.50 +1.2 830,498 + PFR28_00775 0.51 -2.0 830,498 + PFR28_00775 0.51 +1.7 830,498 + PFR28_00775 0.51 -0.3 830,498 + PFR28_00775 0.51 -0.2 830,499 - PFR28_00775 0.51 +0.3 830,499 - PFR28_00775 0.51 -0.4 830,499 - PFR28_00775 0.51 -1.8 830,499 - PFR28_00775 0.51 +1.4 830,499 - PFR28_00775 0.51 -0.9 830,499 - PFR28_00775 0.51 -1.0 830,499 - PFR28_00775 0.51 +0.9 830,499 - PFR28_00775 0.51 +1.6 830,499 - PFR28_00775 0.51 +1.6 830,540 + PFR28_00775 0.54 -1.7 830,541 - PFR28_00775 0.54 +0.7 830,541 - PFR28_00775 0.54 -1.2 830,541 - PFR28_00775 0.54 +0.1 830,541 - PFR28_00775 0.54 -0.9 830,541 - PFR28_00775 0.54 -0.8 830,552 - PFR28_00775 0.55 +1.6 830,690 + PFR28_00775 0.65 +2.3 830,690 + PFR28_00775 0.65 -2.4 830,691 - PFR28_00775 0.65 -1.4 830,691 - PFR28_00775 0.65 -1.2 830,691 - PFR28_00775 0.65 -1.0 830,691 - PFR28_00775 0.65 -1.2 830,691 - PFR28_00775 0.65 -0.8 830,691 - PFR28_00775 0.65 -0.8 830,691 - PFR28_00775 0.65 +0.3 830,804 + PFR28_00775 0.73 -3.4 830,804 + PFR28_00775 0.73 -0.5 830,804 + PFR28_00775 0.73 -0.5 830,804 + PFR28_00775 0.73 -1.8 830,804 + PFR28_00775 0.73 -3.1 830,805 - PFR28_00775 0.73 +0.4 830,805 - PFR28_00775 0.73 -1.0 830,805 - PFR28_00775 0.73 -1.8 830,849 + PFR28_00775 0.76 +0.4 830,849 + PFR28_00775 0.76 -0.1 830,849 + PFR28_00775 0.76 -0.4 830,850 - PFR28_00775 0.76 +0.1 830,850 - PFR28_00775 0.76 +2.2 830,879 + PFR28_00775 0.78 -0.1 830,879 + PFR28_00775 0.78 -1.0 830,879 + PFR28_00775 0.78 -2.6 830,880 - PFR28_00775 0.79 -1.4 830,981 + PFR28_00775 0.86 -0.4 830,981 + PFR28_00775 0.86 -0.2 830,981 + PFR28_00775 0.86 -0.8 831,047 + +0.8 831,047 + -0.1 831,048 - -0.5 831,147 - +0.2 831,147 - -1.2 831,147 - +0.4 831,147 - +1.1 831,147 - +1.2 831,163 + -2.2 831,163 + +0.8 831,164 - +0.2 831,198 - -1.0 831,206 + +0.4 831,207 - -0.1 831,319 + +0.6 831,330 - -0.4 831,330 - +0.4 831,330 - +0.8 831,364 + -1.3 831,446 + -0.6 831,446 + -0.6 831,446 + -3.4 831,446 + +0.3 831,447 - -0.6 831,447 - +0.5 831,488 + PFR28_00776 0.10 -1.3 831,489 - PFR28_00776 0.10 -1.0 831,534 + PFR28_00776 0.13 -1.1 831,710 + PFR28_00776 0.24 +1.0 831,710 + PFR28_00776 0.24 +0.7 831,711 - PFR28_00776 0.24 -1.2 831,711 - PFR28_00776 0.24 +1.4 831,711 - PFR28_00776 0.24 -0.5 831,929 + PFR28_00776 0.38 +0.2 831,929 + PFR28_00776 0.38 -0.8 832,028 + PFR28_00776 0.45 -0.4 832,028 + PFR28_00776 0.45 +0.1 832,028 + PFR28_00776 0.45 -0.2 832,028 + PFR28_00776 0.45 +0.3 832,028 + PFR28_00776 0.45 -0.8 832,029 - PFR28_00776 0.45 -0.7 832,029 - PFR28_00776 0.45 -0.1 832,029 - PFR28_00776 0.45 -0.4 832,029 - PFR28_00776 0.45 +0.3 832,029 - PFR28_00776 0.45 -0.1 832,029 - PFR28_00776 0.45 +1.3 832,029 - PFR28_00776 0.45 -1.0 832,046 + PFR28_00776 0.46 -0.2 832,046 + PFR28_00776 0.46 +0.4 832,046 + PFR28_00776 0.46 -0.8 832,046 + PFR28_00776 0.46 +1.6 832,047 - PFR28_00776 0.46 -1.4 832,047 - PFR28_00776 0.46 -0.3 832,159 - PFR28_00776 0.53 +0.9 832,159 - PFR28_00776 0.53 +0.2 832,159 - PFR28_00776 0.53 -1.4 832,159 - PFR28_00776 0.53 -2.9 832,159 - PFR28_00776 0.53 -0.8 832,173 - PFR28_00776 0.54 +0.7 832,394 + PFR28_00776 0.68 -0.6 832,395 - PFR28_00776 0.68 -1.0 832,395 - PFR28_00776 0.68 -0.4 832,395 - PFR28_00776 0.68 +0.5 832,433 + PFR28_00776 0.71 -1.5 832,762 - -0.4 832,762 - +0.4 832,841 + -0.1 832,857 + +0.0 832,866 + -0.5 832,866 + -0.4 832,867 - -0.3 832,867 - +0.8 832,867 - -1.0 832,878 + -1.0 832,878 + +0.9 832,878 + +0.4 832,879 - +1.6 832,879 - +0.1 832,940 + -0.0 832,973 - +0.5 832,996 + PFR28_00777 0.13 +1.6 833,014 + PFR28_00777 0.18 -0.9 833,014 + PFR28_00777 0.18 -0.0 833,014 + PFR28_00777 0.18 -0.4 833,014 + PFR28_00777 0.18 +0.1 833,014 + PFR28_00777 0.18 -0.7 833,015 - PFR28_00777 0.18 -0.8 833,015 - PFR28_00777 0.18 -0.3 833,015 - PFR28_00777 0.18 -0.6 833,015 - PFR28_00777 0.18 -1.6 833,015 - PFR28_00777 0.18 -3.5 833,109 + PFR28_00777 0.40 -0.6 833,109 + PFR28_00777 0.40 +0.3 833,110 - PFR28_00777 0.40 -0.2 833,214 - PFR28_00777 0.65 -1.2 833,288 + PFR28_00777 0.82 +0.3 833,288 + PFR28_00777 0.82 -3.1 833,288 + PFR28_00777 0.82 +0.9 833,288 + PFR28_00777 0.82 -0.0 833,289 - PFR28_00777 0.82 +0.6 833,289 - PFR28_00777 0.82 -1.1 833,289 - PFR28_00777 0.82 -0.4 833,289 - PFR28_00777 0.82 -0.5 833,412 + -1.6 833,412 + +0.1 833,412 + -1.7 833,413 - +0.0 833,413 - -0.3 833,564 - PFR28_00778 0.20 -0.6 833,616 + PFR28_00778 0.26 +0.8 833,616 + PFR28_00778 0.26 -1.2 833,616 + PFR28_00778 0.26 +1.1 833,743 + PFR28_00778 0.39 -1.7 833,745 + PFR28_00778 0.39 -1.3 833,746 - PFR28_00778 0.39 +0.5 833,771 + PFR28_00778 0.42 -0.4 833,772 - PFR28_00778 0.42 -0.2 833,772 - PFR28_00778 0.42 +2.8 833,881 + PFR28_00778 0.54 -1.3
Or see this region's nucleotide sequence