Strain Fitness in Pseudomonas sp. RS175 around PFR28_00407

Experiment: p-Coumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00406 and PFR28_00407 are separated by 107 nucleotidesPFR28_00407 and PFR28_00408 overlap by 4 nucleotidesPFR28_00408 and PFR28_00409 are separated by 2 nucleotides PFR28_00406: PFR28_00406 - UDP-3-O-acylglucosamine N-acyltransferase, at 444,841 to 445,896 _00406 PFR28_00407: PFR28_00407 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ, at 446,004 to 446,444 _00407 PFR28_00408: PFR28_00408 - Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 446,441 to 447,217 _00408 PFR28_00409: PFR28_00409 - Lipid-A-disaccharide synthase, at 447,220 to 448,350 _00409 Position (kb) 446 447Strain fitness (log2 ratio) -1 0 1at 445.897 kb on + strandat 445.984 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C)
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445,897 + -1.2
445,984 + +1.1

Or see this region's nucleotide sequence