Strain Fitness in Pseudomonas sp. RS175 around PFR28_04538

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
5,179,203	+		PFR28_04536	0.89	+1.7
5,179,203	+		PFR28_04536	0.89	+3.1
5,179,203	+		PFR28_04536	0.89	+0.2
5,179,223	+				-1.0
5,179,223	+				+0.6
5,179,223	+				-1.5
5,179,223	+				-0.5
5,179,223	+				-0.1
5,179,223	+				-0.6
5,179,223	+				-1.4
5,179,223	+				+0.4
5,179,223	+				+0.6
5,179,223	+				-0.5
5,179,224	-				+0.4
5,179,224	-				-0.5
5,179,224	-				-0.1
5,179,224	-				+0.1
5,179,224	-				-0.2
5,179,224	-				+0.2
5,179,224	-				+0.5
5,179,251	+				+0.0
5,179,251	+				-0.7
5,179,252	-				+1.0
5,179,252	-				+0.7
5,179,252	-				-0.0
5,179,285	-				+0.6
5,179,285	-				+0.3
5,179,285	-				-0.8
5,179,321	+				+1.5
5,179,321	+				-0.1
5,179,322	-				+0.0
5,179,322	-				-0.2
5,179,376	-				+0.8
5,179,376	-				+1.4
5,179,404	-		PFR28_04537	0.11	-1.4
5,179,404	-		PFR28_04537	0.11	+0.1
5,179,476	+		PFR28_04537	0.20	+0.9
5,179,476	+		PFR28_04537	0.20	-1.1
5,179,476	+		PFR28_04537	0.20	+1.2
5,179,476	+		PFR28_04537	0.20	-0.0
5,179,476	+		PFR28_04537	0.20	+0.5
5,179,476	+		PFR28_04537	0.20	+1.3
5,179,477	-		PFR28_04537	0.20	+1.3
5,179,477	-		PFR28_04537	0.20	-0.2
5,179,477	-		PFR28_04537	0.20	-0.1
5,179,477	-		PFR28_04537	0.20	+1.1
5,179,477	-		PFR28_04537	0.20	-0.4
5,179,477	-		PFR28_04537	0.20	-0.0
5,179,477	-		PFR28_04537	0.20	-0.9
5,179,477	-		PFR28_04537	0.20	-0.0
5,179,477	-		PFR28_04537	0.20	+0.3
5,179,477	-		PFR28_04537	0.20	+0.7
5,179,698	+		PFR28_04537	0.45	+0.1
5,179,698	+		PFR28_04537	0.45	+0.5
5,179,698	+		PFR28_04537	0.45	-0.1
5,179,698	+		PFR28_04537	0.45	+1.2
5,179,698	+		PFR28_04537	0.45	+1.5
5,179,698	+		PFR28_04537	0.45	+1.9
5,179,698	+		PFR28_04537	0.45	+0.4
5,179,698	+		PFR28_04537	0.45	+0.6
5,179,698	+		PFR28_04537	0.45	+0.7
5,179,698	+		PFR28_04537	0.45	+3.8
5,179,698	+		PFR28_04537	0.45	+1.1
5,179,698	+		PFR28_04537	0.45	-1.3
5,179,698	+		PFR28_04537	0.45	-0.2
5,179,698	+		PFR28_04537	0.45	-0.5
5,179,698	+		PFR28_04537	0.45	+0.5
5,179,699	-		PFR28_04537	0.45	+0.1
5,179,699	-		PFR28_04537	0.45	-1.1
5,179,699	-		PFR28_04537	0.45	+0.6
5,179,699	-		PFR28_04537	0.45	-0.6
5,179,699	-		PFR28_04537	0.45	-0.5
5,179,699	-		PFR28_04537	0.45	-0.8
5,179,699	-		PFR28_04537	0.45	+0.7
5,179,699	-		PFR28_04537	0.45	-0.6
5,179,699	-		PFR28_04537	0.45	+0.1
5,179,699	-		PFR28_04537	0.45	+0.8
5,179,699	-		PFR28_04537	0.45	+0.3
5,179,699	-		PFR28_04537	0.45	+0.6
5,179,699	-		PFR28_04537	0.45	+0.7
5,179,699	-		PFR28_04537	0.45	+0.3
5,179,699	-		PFR28_04537	0.45	-0.3
5,179,702	+		PFR28_04537	0.45	-0.2
5,179,702	+		PFR28_04537	0.45	+0.3
5,179,702	+		PFR28_04537	0.45	+0.1
5,179,702	+		PFR28_04537	0.45	+0.3
5,179,702	+		PFR28_04537	0.45	+0.7
5,179,702	+		PFR28_04537	0.45	+0.3
5,179,702	+		PFR28_04537	0.45	-2.3
5,179,702	+		PFR28_04537	0.45	-2.6
5,179,702	+		PFR28_04537	0.45	-1.0
5,179,702	+		PFR28_04537	0.45	+0.2
5,179,702	+		PFR28_04537	0.45	+1.5
5,179,702	+		PFR28_04537	0.45	+0.2
5,179,702	+		PFR28_04537	0.45	+1.2
5,179,702	+		PFR28_04537	0.45	-1.2
5,179,702	+		PFR28_04537	0.45	+3.1
5,179,702	+		PFR28_04537	0.45	+0.2
5,179,702	+		PFR28_04537	0.45	+0.8
5,179,702	+		PFR28_04537	0.45	-0.5
5,179,702	+		PFR28_04537	0.45	+0.5
5,179,702	+		PFR28_04537	0.45	-2.9
5,179,702	+		PFR28_04537	0.45	+0.5
5,179,703	-		PFR28_04537	0.45	+0.7
5,179,703	-		PFR28_04537	0.45	+0.7
5,179,703	-		PFR28_04537	0.45	-1.0
5,179,703	-		PFR28_04537	0.45	-0.1
5,179,703	-		PFR28_04537	0.45	-0.7
5,179,703	-		PFR28_04537	0.45	+0.8
5,179,703	-		PFR28_04537	0.45	+0.2
5,179,703	-		PFR28_04537	0.45	-0.0
5,179,703	-		PFR28_04537	0.45	-1.6
5,179,703	-		PFR28_04537	0.45	-0.6
5,179,703	-		PFR28_04537	0.45	+2.5
5,179,703	-		PFR28_04537	0.45	-1.1
5,179,703	-		PFR28_04537	0.45	+1.2
5,179,703	-		PFR28_04537	0.45	+0.0
5,179,703	-		PFR28_04537	0.45	-0.3
5,179,755	+		PFR28_04537	0.51	+0.0
5,179,756	-		PFR28_04537	0.51	+0.8
5,179,756	-		PFR28_04537	0.51	-1.6
5,179,776	+		PFR28_04537	0.54	+0.1
5,179,776	+		PFR28_04537	0.54	+0.3
5,179,777	-		PFR28_04537	0.54	-0.2
5,179,777	-		PFR28_04537	0.54	+1.5
5,179,777	-		PFR28_04537	0.54	-1.2
5,179,791	+		PFR28_04537	0.55	-0.2
5,179,791	+		PFR28_04537	0.55	-0.1
5,179,791	+		PFR28_04537	0.55	+0.9
5,179,792	-		PFR28_04537	0.56	-0.8
5,179,792	-		PFR28_04537	0.56	-1.7
5,179,792	-		PFR28_04537	0.56	+1.2
5,179,792	-		PFR28_04537	0.56	+0.0
5,180,002	+		PFR28_04537	0.80	+0.6
5,180,002	+		PFR28_04537	0.80	+1.7
5,180,002	+		PFR28_04537	0.80	+0.8
5,180,002	+		PFR28_04537	0.80	+1.0
5,180,003	-		PFR28_04537	0.80	-1.0
5,180,066	+		PFR28_04537	0.87	-1.2
5,180,082	+		PFR28_04537	0.89	-0.1
5,180,083	-		PFR28_04537	0.89	+0.3
5,180,123	+				+0.2
5,180,139	+				+0.4
5,180,139	+				+0.9
5,180,139	+				+0.3
5,180,140	-				+0.7
5,180,140	-				-1.5
5,180,157	+				+0.4
5,180,158	-				+1.7
5,180,289	+		PFR28_04538	0.18	-1.2
5,180,289	+		PFR28_04538	0.18	-0.3
5,180,289	+		PFR28_04538	0.18	-0.6
5,180,289	+		PFR28_04538	0.18	+0.1
5,180,290	-		PFR28_04538	0.18	-0.4
5,180,290	-		PFR28_04538	0.18	+0.4
5,180,613	+		PFR28_04538	0.80	-1.1
5,180,664	+				+0.3
5,180,664	+				-0.4
5,180,665	-				+0.8
5,180,665	-				+0.4
5,180,674	+				-0.1
5,180,674	+				+0.3
5,180,674	+				-1.2
5,180,674	+				-0.4
5,180,674	+				+0.6
5,180,674	+				+0.7
5,180,675	-				-0.6
5,180,675	-				+0.6
5,180,745	+				-1.2
5,180,790	+				+0.0
5,180,790	+				+0.3
5,180,790	+				+0.3
5,180,791	-				+0.4
5,180,791	-				+0.9
5,180,791	-				+1.3
5,180,791	-				-0.4
5,180,791	-				-0.3
5,180,791	-				+0.9
5,180,824	+				-0.6
5,180,825	-				+0.2
5,180,825	-				-0.6
5,180,907	+				+0.3
5,180,907	+				-0.5
5,180,908	-				+0.6
5,180,908	-				-0.3
5,181,020	-		PFR28_04539	0.11	+0.6
5,181,020	-		PFR28_04539	0.11	+0.4
5,181,039	+		PFR28_04539	0.13	-0.2
5,181,040	-		PFR28_04539	0.13	+1.8
5,181,040	-		PFR28_04539	0.13	+0.1
5,181,052	+		PFR28_04539	0.14	+0.3
5,181,053	-		PFR28_04539	0.14	-0.0
5,181,053	-		PFR28_04539	0.14	+0.9
5,181,160	+		PFR28_04539	0.21	-0.4
5,181,160	+		PFR28_04539	0.21	+1.5
5,181,160	+		PFR28_04539	0.21	-1.2
5,181,161	-		PFR28_04539	0.21	+3.5
5,181,161	-		PFR28_04539	0.21	+0.5
5,181,221	+		PFR28_04539	0.25	+1.5
5,181,383	+		PFR28_04539	0.37	+0.7
5,181,384	-		PFR28_04539	0.37	+0.1
5,181,384	-		PFR28_04539	0.37	+0.1
5,181,385	+		PFR28_04539	0.37	-0.1
5,181,385	+		PFR28_04539	0.37	+0.2
5,181,385	+		PFR28_04539	0.37	+0.1
5,181,385	+		PFR28_04539	0.37	-0.5
5,181,385	+		PFR28_04539	0.37	-1.5
5,181,385	+		PFR28_04539	0.37	-1.2
5,181,385	+		PFR28_04539	0.37	+1.3
5,181,385	+		PFR28_04539	0.37	+1.3
5,181,386	-		PFR28_04539	0.37	-0.5
5,181,386	-		PFR28_04539	0.37	-0.6
5,181,386	-		PFR28_04539	0.37	-0.3
5,181,386	-		PFR28_04539	0.37	+0.5
5,181,386	-		PFR28_04539	0.37	+0.8
5,181,386	-		PFR28_04539	0.37	+0.1
5,181,386	-		PFR28_04539	0.37	-3.6
5,181,386	-		PFR28_04539	0.37	+0.1
5,181,389	+		PFR28_04539	0.37	-0.1
5,181,389	+		PFR28_04539	0.37	-0.4
5,181,389	+		PFR28_04539	0.37	+0.8
5,181,389	+		PFR28_04539	0.37	-1.3
5,181,389	+		PFR28_04539	0.37	-0.8
5,181,389	+		PFR28_04539	0.37	+0.6
5,181,389	+		PFR28_04539	0.37	-0.1
5,181,389	+		PFR28_04539	0.37	-0.7
5,181,389	+		PFR28_04539	0.37	+0.2
5,181,389	+		PFR28_04539	0.37	-1.5
5,181,389	+		PFR28_04539	0.37	+0.5
5,181,389	+		PFR28_04539	0.37	+0.3
5,181,389	+		PFR28_04539	0.37	+0.5
5,181,389	+		PFR28_04539	0.37	-0.8
5,181,389	+		PFR28_04539	0.37	-0.3
5,181,389	+		PFR28_04539	0.37	-0.0
5,181,389	+		PFR28_04539	0.37	+0.2
5,181,389	+		PFR28_04539	0.37	-0.7
5,181,390	-		PFR28_04539	0.37	-0.4
5,181,390	-		PFR28_04539	0.37	+1.1
5,181,390	-		PFR28_04539	0.37	+0.6
5,181,390	-		PFR28_04539	0.37	+0.1
5,181,390	-		PFR28_04539	0.37	+1.0
5,181,390	-		PFR28_04539	0.37	-0.2
5,181,390	-		PFR28_04539	0.37	+0.1
5,181,390	-		PFR28_04539	0.37	+0.1
5,181,390	-		PFR28_04539	0.37	+2.1
5,181,390	-		PFR28_04539	0.37	+0.1
5,181,390	-		PFR28_04539	0.37	+1.5
5,181,390	-		PFR28_04539	0.37	+0.6
5,181,390	-		PFR28_04539	0.37	+0.3
5,181,390	-		PFR28_04539	0.37	-0.8
5,181,390	-		PFR28_04539	0.37	-0.7
5,181,390	-		PFR28_04539	0.37	+0.3
5,181,390	-		PFR28_04539	0.37	-0.9
5,181,394	+		PFR28_04539	0.37	+0.3
5,181,394	+		PFR28_04539	0.37	+0.4
5,181,394	+		PFR28_04539	0.37	-0.1
5,181,394	+		PFR28_04539	0.37	-0.6
5,181,394	+		PFR28_04539	0.37	-0.3
5,181,395	-		PFR28_04539	0.37	-0.1
5,181,395	-		PFR28_04539	0.37	-1.2
5,181,395	-		PFR28_04539	0.37	-0.3
5,181,395	-		PFR28_04539	0.37	+0.6
5,181,395	-		PFR28_04539	0.37	-0.2
5,181,395	-		PFR28_04539	0.37	-1.1
5,181,395	-		PFR28_04539	0.37	-0.5
5,181,395	-		PFR28_04539	0.37	+0.1
5,181,395	-		PFR28_04539	0.37	-1.1
5,181,395	-		PFR28_04539	0.37	+0.1
5,181,430	+		PFR28_04539	0.40	-1.3
5,181,430	+		PFR28_04539	0.40	+0.0
5,181,430	+		PFR28_04539	0.40	-0.1
5,181,430	+		PFR28_04539	0.40	-1.0
5,181,430	+		PFR28_04539	0.40	+0.2
5,181,431	-		PFR28_04539	0.40	+0.5
5,181,431	-		PFR28_04539	0.40	+0.2
5,181,431	-		PFR28_04539	0.40	+0.5
5,181,431	-		PFR28_04539	0.40	+2.2
5,181,431	-		PFR28_04539	0.40	+0.3
5,181,494	+		PFR28_04539	0.44	+1.3
5,181,589	+		PFR28_04539	0.51	+0.5
5,181,589	+		PFR28_04539	0.51	-0.1
5,181,589	+		PFR28_04539	0.51	+1.0
5,181,589	+		PFR28_04539	0.51	-0.4
5,181,589	+		PFR28_04539	0.51	-0.3
5,181,589	+		PFR28_04539	0.51	-0.2
5,181,589	+		PFR28_04539	0.51	-1.3
5,181,589	+		PFR28_04539	0.51	+0.3
5,181,589	+		PFR28_04539	0.51	+0.9
5,181,590	-		PFR28_04539	0.51	+0.0
5,181,590	-		PFR28_04539	0.51	-0.0
5,181,590	-		PFR28_04539	0.51	-0.4
5,181,590	-		PFR28_04539	0.51	-0.5
5,181,590	-		PFR28_04539	0.51	-1.8
5,181,593	+		PFR28_04539	0.51	+1.3
5,181,593	+		PFR28_04539	0.51	+0.1
5,181,593	+		PFR28_04539	0.51	-0.9
5,181,594	-		PFR28_04539	0.51	+0.4