Strain Fitness in Bosea sp. OAE506 around ABIE41_RS22000

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21990 and ABIE41_RS21995 are separated by 20 nucleotidesABIE41_RS21995 and ABIE41_RS22000 overlap by 4 nucleotidesABIE41_RS22000 and ABIE41_RS22005 are separated by 77 nucleotides ABIE41_RS21990: ABIE41_RS21990 - D-TA family PLP-dependent enzyme, at 4,521,395 to 4,522,477 _RS21990 ABIE41_RS21995: ABIE41_RS21995 - RidA family protein, at 4,522,498 to 4,522,956 _RS21995 ABIE41_RS22000: ABIE41_RS22000 - GNAT family N-acetyltransferase, at 4,522,953 to 4,523,483 _RS22000 ABIE41_RS22005: ABIE41_RS22005 - amidohydrolase/deacetylase family metallohydrolase, at 4,523,561 to 4,524,724 _RS22005 Position (kb) 4522 4523 4524Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4522.206 kb on + strand, within ABIE41_RS21990at 4522.206 kb on + strand, within ABIE41_RS21990at 4522.206 kb on + strand, within ABIE41_RS21990at 4522.206 kb on + strand, within ABIE41_RS21990at 4522.206 kb on + strand, within ABIE41_RS21990at 4522.207 kb on - strand, within ABIE41_RS21990at 4522.207 kb on - strand, within ABIE41_RS21990at 4522.207 kb on - strand, within ABIE41_RS21990at 4522.324 kb on + strand, within ABIE41_RS21990at 4522.324 kb on + strand, within ABIE41_RS21990at 4522.324 kb on + strand, within ABIE41_RS21990at 4522.325 kb on - strand, within ABIE41_RS21990at 4522.325 kb on - strand, within ABIE41_RS21990at 4522.325 kb on - strand, within ABIE41_RS21990at 4522.437 kb on + strandat 4522.437 kb on + strandat 4522.437 kb on + strandat 4522.438 kb on - strandat 4522.438 kb on - strandat 4522.438 kb on - strandat 4522.438 kb on - strandat 4522.653 kb on - strand, within ABIE41_RS21995at 4522.752 kb on + strand, within ABIE41_RS21995at 4522.752 kb on + strand, within ABIE41_RS21995at 4522.753 kb on - strand, within ABIE41_RS21995at 4522.753 kb on - strand, within ABIE41_RS21995at 4522.886 kb on + strand, within ABIE41_RS21995at 4522.886 kb on + strand, within ABIE41_RS21995at 4522.886 kb on + strand, within ABIE41_RS21995at 4522.886 kb on + strand, within ABIE41_RS21995at 4522.886 kb on + strand, within ABIE41_RS21995at 4522.887 kb on - strand, within ABIE41_RS21995at 4522.887 kb on - strand, within ABIE41_RS21995at 4522.887 kb on - strand, within ABIE41_RS21995at 4522.887 kb on - strand, within ABIE41_RS21995at 4522.887 kb on - strand, within ABIE41_RS21995at 4523.013 kb on - strand, within ABIE41_RS22000at 4523.013 kb on - strand, within ABIE41_RS22000at 4523.014 kb on + strand, within ABIE41_RS22000at 4523.014 kb on + strand, within ABIE41_RS22000at 4523.015 kb on - strand, within ABIE41_RS22000at 4523.032 kb on + strand, within ABIE41_RS22000at 4523.233 kb on + strand, within ABIE41_RS22000at 4523.233 kb on + strand, within ABIE41_RS22000at 4523.233 kb on + strand, within ABIE41_RS22000at 4523.233 kb on + strand, within ABIE41_RS22000at 4523.233 kb on + strand, within ABIE41_RS22000at 4523.234 kb on - strand, within ABIE41_RS22000at 4523.234 kb on - strand, within ABIE41_RS22000at 4523.234 kb on - strand, within ABIE41_RS22000at 4523.320 kb on + strand, within ABIE41_RS22000at 4523.320 kb on + strand, within ABIE41_RS22000at 4523.411 kb on - strand, within ABIE41_RS22000at 4523.481 kb on + strandat 4523.682 kb on + strand, within ABIE41_RS22005at 4523.859 kb on + strand, within ABIE41_RS22005at 4523.859 kb on + strand, within ABIE41_RS22005at 4523.860 kb on - strand, within ABIE41_RS22005at 4523.860 kb on - strand, within ABIE41_RS22005at 4524.117 kb on + strand, within ABIE41_RS22005at 4524.118 kb on - strand, within ABIE41_RS22005at 4524.118 kb on - strand, within ABIE41_RS22005at 4524.118 kb on - strand, within ABIE41_RS22005at 4524.118 kb on - strand, within ABIE41_RS22005at 4524.118 kb on - strand, within ABIE41_RS22005at 4524.351 kb on + strand, within ABIE41_RS22005at 4524.351 kb on + strand, within ABIE41_RS22005at 4524.352 kb on - strand, within ABIE41_RS22005at 4524.378 kb on + strand, within ABIE41_RS22005at 4524.379 kb on - strand, within ABIE41_RS22005at 4524.379 kb on - strand, within ABIE41_RS22005at 4524.379 kb on - strand, within ABIE41_RS22005

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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4,522,206 + ABIE41_RS21990 0.75 -0.7
4,522,206 + ABIE41_RS21990 0.75 -2.9
4,522,206 + ABIE41_RS21990 0.75 -0.7
4,522,206 + ABIE41_RS21990 0.75 -1.4
4,522,206 + ABIE41_RS21990 0.75 +0.4
4,522,207 - ABIE41_RS21990 0.75 -0.1
4,522,207 - ABIE41_RS21990 0.75 -0.2
4,522,207 - ABIE41_RS21990 0.75 -0.7
4,522,324 + ABIE41_RS21990 0.86 -0.2
4,522,324 + ABIE41_RS21990 0.86 -0.5
4,522,324 + ABIE41_RS21990 0.86 +0.4
4,522,325 - ABIE41_RS21990 0.86 +1.6
4,522,325 - ABIE41_RS21990 0.86 -1.1
4,522,325 - ABIE41_RS21990 0.86 +0.3
4,522,437 + -0.3
4,522,437 + +0.1
4,522,437 + +0.3
4,522,438 - +0.4
4,522,438 - +0.6
4,522,438 - -0.4
4,522,438 - -0.0
4,522,653 - ABIE41_RS21995 0.34 +1.5
4,522,752 + ABIE41_RS21995 0.55 +0.4
4,522,752 + ABIE41_RS21995 0.55 -0.1
4,522,753 - ABIE41_RS21995 0.56 +0.2
4,522,753 - ABIE41_RS21995 0.56 -0.7
4,522,886 + ABIE41_RS21995 0.85 +0.2
4,522,886 + ABIE41_RS21995 0.85 -0.3
4,522,886 + ABIE41_RS21995 0.85 +0.3
4,522,886 + ABIE41_RS21995 0.85 +0.5
4,522,886 + ABIE41_RS21995 0.85 -0.2
4,522,887 - ABIE41_RS21995 0.85 +0.3
4,522,887 - ABIE41_RS21995 0.85 +0.4
4,522,887 - ABIE41_RS21995 0.85 +0.6
4,522,887 - ABIE41_RS21995 0.85 +1.8
4,522,887 - ABIE41_RS21995 0.85 -0.9
4,523,013 - ABIE41_RS22000 0.11 +0.2
4,523,013 - ABIE41_RS22000 0.11 -1.3
4,523,014 + ABIE41_RS22000 0.11 +0.8
4,523,014 + ABIE41_RS22000 0.11 -0.1
4,523,015 - ABIE41_RS22000 0.12 -1.4
4,523,032 + ABIE41_RS22000 0.15 +2.3
4,523,233 + ABIE41_RS22000 0.53 +0.1
4,523,233 + ABIE41_RS22000 0.53 -0.4
4,523,233 + ABIE41_RS22000 0.53 +0.0
4,523,233 + ABIE41_RS22000 0.53 +0.8
4,523,233 + ABIE41_RS22000 0.53 +0.6
4,523,234 - ABIE41_RS22000 0.53 -1.4
4,523,234 - ABIE41_RS22000 0.53 +0.6
4,523,234 - ABIE41_RS22000 0.53 -0.0
4,523,320 + ABIE41_RS22000 0.69 -0.1
4,523,320 + ABIE41_RS22000 0.69 -0.8
4,523,411 - ABIE41_RS22000 0.86 +0.7
4,523,481 + +1.9
4,523,682 + ABIE41_RS22005 0.10 +1.9
4,523,859 + ABIE41_RS22005 0.26 -0.1
4,523,859 + ABIE41_RS22005 0.26 +0.4
4,523,860 - ABIE41_RS22005 0.26 -2.9
4,523,860 - ABIE41_RS22005 0.26 +0.1
4,524,117 + ABIE41_RS22005 0.48 +0.3
4,524,118 - ABIE41_RS22005 0.48 +0.4
4,524,118 - ABIE41_RS22005 0.48 -0.4
4,524,118 - ABIE41_RS22005 0.48 -0.0
4,524,118 - ABIE41_RS22005 0.48 +0.1
4,524,118 - ABIE41_RS22005 0.48 -0.6
4,524,351 + ABIE41_RS22005 0.68 -0.9
4,524,351 + ABIE41_RS22005 0.68 +0.1
4,524,352 - ABIE41_RS22005 0.68 +0.8
4,524,378 + ABIE41_RS22005 0.70 -0.7
4,524,379 - ABIE41_RS22005 0.70 -0.2
4,524,379 - ABIE41_RS22005 0.70 -1.0
4,524,379 - ABIE41_RS22005 0.70 +0.4

Or see this region's nucleotide sequence