Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21495 and ABIE41_RS21500 overlap by 4 nucleotides ABIE41_RS21500 and ABIE41_RS21505 are separated by 13 nucleotides ABIE41_RS21505 and ABIE41_RS21510 are separated by 11 nucleotides ABIE41_RS21510 and ABIE41_RS21515 are separated by 36 nucleotides ABIE41_RS21515 and ABIE41_RS21520 overlap by 4 nucleotides
ABIE41_RS21495: ABIE41_RS21495 - NlpC/P60 family protein, at 4,421,890 to 4,422,333
_RS21495
ABIE41_RS21500: ABIE41_RS21500 - DUF2163 domain-containing protein, at 4,422,330 to 4,423,211
_RS21500
ABIE41_RS21505: ABIE41_RS21505 - DUF2460 domain-containing protein, at 4,423,225 to 4,423,864
_RS21505
ABIE41_RS21510: ABIE41_RS21510 - phage tail tape measure protein, at 4,423,876 to 4,424,472
_RS21510
ABIE41_RS21515: ABIE41_RS21515 - phage tail assembly chaperone, at 4,424,509 to 4,424,712
_RS21515
ABIE41_RS21520: ABIE41_RS21520 - gene transfer agent family protein, at 4,424,709 to 4,425,077
_RS21520
Position (kb)
4423
4424 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4422.269 kb on + strand, within ABIE41_RS21495 at 4422.270 kb on - strand, within ABIE41_RS21495 at 4422.270 kb on - strand, within ABIE41_RS21495 at 4422.270 kb on - strand, within ABIE41_RS21495 at 4422.407 kb on + strand at 4422.772 kb on + strand, within ABIE41_RS21500 at 4422.772 kb on + strand, within ABIE41_RS21500 at 4422.772 kb on + strand, within ABIE41_RS21500 at 4422.773 kb on - strand, within ABIE41_RS21500 at 4422.773 kb on - strand, within ABIE41_RS21500 at 4422.773 kb on - strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4423.493 kb on + strand, within ABIE41_RS21505 at 4423.493 kb on + strand, within ABIE41_RS21505 at 4423.493 kb on + strand, within ABIE41_RS21505 at 4423.493 kb on + strand, within ABIE41_RS21505 at 4423.493 kb on + strand, within ABIE41_RS21505 at 4423.494 kb on - strand, within ABIE41_RS21505 at 4423.723 kb on - strand, within ABIE41_RS21505 at 4423.723 kb on - strand, within ABIE41_RS21505 at 4424.112 kb on - strand, within ABIE41_RS21510 at 4424.760 kb on - strand, within ABIE41_RS21520 at 4424.768 kb on + strand, within ABIE41_RS21520 at 4424.768 kb on + strand, within ABIE41_RS21520 at 4424.769 kb on - strand, within ABIE41_RS21520 at 4424.769 kb on - strand, within ABIE41_RS21520 at 4424.769 kb on - strand, within ABIE41_RS21520 at 4424.772 kb on - strand, within ABIE41_RS21520 at 4424.772 kb on - strand, within ABIE41_RS21520
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 4,422,269 + ABIE41_RS21495 0.85 -0.4 4,422,270 - ABIE41_RS21495 0.86 -0.2 4,422,270 - ABIE41_RS21495 0.86 -0.1 4,422,270 - ABIE41_RS21495 0.86 +0.0 4,422,407 + +0.3 4,422,772 + ABIE41_RS21500 0.50 -0.9 4,422,772 + ABIE41_RS21500 0.50 -1.4 4,422,772 + ABIE41_RS21500 0.50 +1.4 4,422,773 - ABIE41_RS21500 0.50 -1.2 4,422,773 - ABIE41_RS21500 0.50 -1.4 4,422,773 - ABIE41_RS21500 0.50 +2.9 4,422,937 + ABIE41_RS21500 0.69 -2.5 4,422,937 + ABIE41_RS21500 0.69 -0.1 4,422,937 + ABIE41_RS21500 0.69 +0.2 4,422,937 + ABIE41_RS21500 0.69 +0.0 4,422,937 + ABIE41_RS21500 0.69 -0.4 4,423,493 + ABIE41_RS21505 0.42 -1.1 4,423,493 + ABIE41_RS21505 0.42 +0.6 4,423,493 + ABIE41_RS21505 0.42 +0.6 4,423,493 + ABIE41_RS21505 0.42 +0.2 4,423,493 + ABIE41_RS21505 0.42 +0.2 4,423,494 - ABIE41_RS21505 0.42 -0.1 4,423,723 - ABIE41_RS21505 0.78 +0.1 4,423,723 - ABIE41_RS21505 0.78 -0.3 4,424,112 - ABIE41_RS21510 0.40 -0.6 4,424,760 - ABIE41_RS21520 0.14 -0.1 4,424,768 + ABIE41_RS21520 0.16 +0.3 4,424,768 + ABIE41_RS21520 0.16 -2.4 4,424,769 - ABIE41_RS21520 0.16 +0.6 4,424,769 - ABIE41_RS21520 0.16 +1.1 4,424,769 - ABIE41_RS21520 0.16 -0.0 4,424,772 - ABIE41_RS21520 0.17 -1.0 4,424,772 - ABIE41_RS21520 0.17 -0.7
Or see this region's nucleotide sequence