Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21505

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21495 and ABIE41_RS21500 overlap by 4 nucleotidesABIE41_RS21500 and ABIE41_RS21505 are separated by 13 nucleotidesABIE41_RS21505 and ABIE41_RS21510 are separated by 11 nucleotidesABIE41_RS21510 and ABIE41_RS21515 are separated by 36 nucleotidesABIE41_RS21515 and ABIE41_RS21520 overlap by 4 nucleotides ABIE41_RS21495: ABIE41_RS21495 - NlpC/P60 family protein, at 4,421,890 to 4,422,333 _RS21495 ABIE41_RS21500: ABIE41_RS21500 - DUF2163 domain-containing protein, at 4,422,330 to 4,423,211 _RS21500 ABIE41_RS21505: ABIE41_RS21505 - DUF2460 domain-containing protein, at 4,423,225 to 4,423,864 _RS21505 ABIE41_RS21510: ABIE41_RS21510 - phage tail tape measure protein, at 4,423,876 to 4,424,472 _RS21510 ABIE41_RS21515: ABIE41_RS21515 - phage tail assembly chaperone, at 4,424,509 to 4,424,712 _RS21515 ABIE41_RS21520: ABIE41_RS21520 - gene transfer agent family protein, at 4,424,709 to 4,425,077 _RS21520 Position (kb) 4423 4424Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4422.269 kb on + strand, within ABIE41_RS21495at 4422.270 kb on - strand, within ABIE41_RS21495at 4422.270 kb on - strand, within ABIE41_RS21495at 4422.270 kb on - strand, within ABIE41_RS21495at 4422.407 kb on + strandat 4422.772 kb on + strand, within ABIE41_RS21500at 4422.772 kb on + strand, within ABIE41_RS21500at 4422.772 kb on + strand, within ABIE41_RS21500at 4422.773 kb on - strand, within ABIE41_RS21500at 4422.773 kb on - strand, within ABIE41_RS21500at 4422.773 kb on - strand, within ABIE41_RS21500at 4422.937 kb on + strand, within ABIE41_RS21500at 4422.937 kb on + strand, within ABIE41_RS21500at 4422.937 kb on + strand, within ABIE41_RS21500at 4422.937 kb on + strand, within ABIE41_RS21500at 4422.937 kb on + strand, within ABIE41_RS21500at 4423.493 kb on + strand, within ABIE41_RS21505at 4423.493 kb on + strand, within ABIE41_RS21505at 4423.493 kb on + strand, within ABIE41_RS21505at 4423.493 kb on + strand, within ABIE41_RS21505at 4423.493 kb on + strand, within ABIE41_RS21505at 4423.494 kb on - strand, within ABIE41_RS21505at 4423.723 kb on - strand, within ABIE41_RS21505at 4423.723 kb on - strand, within ABIE41_RS21505at 4424.112 kb on - strand, within ABIE41_RS21510at 4424.760 kb on - strand, within ABIE41_RS21520at 4424.768 kb on + strand, within ABIE41_RS21520at 4424.768 kb on + strand, within ABIE41_RS21520at 4424.769 kb on - strand, within ABIE41_RS21520at 4424.769 kb on - strand, within ABIE41_RS21520at 4424.769 kb on - strand, within ABIE41_RS21520at 4424.772 kb on - strand, within ABIE41_RS21520at 4424.772 kb on - strand, within ABIE41_RS21520

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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4,422,269 + ABIE41_RS21495 0.85 -0.4
4,422,270 - ABIE41_RS21495 0.86 -0.2
4,422,270 - ABIE41_RS21495 0.86 -0.1
4,422,270 - ABIE41_RS21495 0.86 +0.0
4,422,407 + +0.3
4,422,772 + ABIE41_RS21500 0.50 -0.9
4,422,772 + ABIE41_RS21500 0.50 -1.4
4,422,772 + ABIE41_RS21500 0.50 +1.4
4,422,773 - ABIE41_RS21500 0.50 -1.2
4,422,773 - ABIE41_RS21500 0.50 -1.4
4,422,773 - ABIE41_RS21500 0.50 +2.9
4,422,937 + ABIE41_RS21500 0.69 -2.5
4,422,937 + ABIE41_RS21500 0.69 -0.1
4,422,937 + ABIE41_RS21500 0.69 +0.2
4,422,937 + ABIE41_RS21500 0.69 +0.0
4,422,937 + ABIE41_RS21500 0.69 -0.4
4,423,493 + ABIE41_RS21505 0.42 -1.1
4,423,493 + ABIE41_RS21505 0.42 +0.6
4,423,493 + ABIE41_RS21505 0.42 +0.6
4,423,493 + ABIE41_RS21505 0.42 +0.2
4,423,493 + ABIE41_RS21505 0.42 +0.2
4,423,494 - ABIE41_RS21505 0.42 -0.1
4,423,723 - ABIE41_RS21505 0.78 +0.1
4,423,723 - ABIE41_RS21505 0.78 -0.3
4,424,112 - ABIE41_RS21510 0.40 -0.6
4,424,760 - ABIE41_RS21520 0.14 -0.1
4,424,768 + ABIE41_RS21520 0.16 +0.3
4,424,768 + ABIE41_RS21520 0.16 -2.4
4,424,769 - ABIE41_RS21520 0.16 +0.6
4,424,769 - ABIE41_RS21520 0.16 +1.1
4,424,769 - ABIE41_RS21520 0.16 -0.0
4,424,772 - ABIE41_RS21520 0.17 -1.0
4,424,772 - ABIE41_RS21520 0.17 -0.7

Or see this region's nucleotide sequence