Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21305 and ABIE41_RS21310 are separated by 152 nucleotides ABIE41_RS21310 and ABIE41_RS21315 are separated by 13 nucleotides ABIE41_RS21315 and ABIE41_RS21320 are separated by 34 nucleotides
ABIE41_RS21305: ABIE41_RS21305 - NirA family protein, at 4,376,688 to 4,378,481
_RS21305
ABIE41_RS21310: ABIE41_RS21310 - ABC transporter ATP-binding protein, at 4,378,634 to 4,379,425
_RS21310
ABIE41_RS21315: ABIE41_RS21315 - nitrate ABC transporter permease, at 4,379,439 to 4,380,347
_RS21315
ABIE41_RS21320: ABIE41_RS21320 - molybdopterin-dependent oxidoreductase, at 4,380,382 to 4,383,087
_RS21320
Position (kb) 4378
4379
4380 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4377.814 kb on + strand, within ABIE41_RS21305 at 4377.814 kb on + strand, within ABIE41_RS21305 at 4377.815 kb on - strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.136 kb on + strand, within ABIE41_RS21305 at 4378.137 kb on - strand, within ABIE41_RS21305 at 4378.137 kb on - strand, within ABIE41_RS21305 at 4378.137 kb on - strand, within ABIE41_RS21305 at 4378.137 kb on - strand, within ABIE41_RS21305 at 4378.137 kb on - strand, within ABIE41_RS21305 at 4378.137 kb on - strand, within ABIE41_RS21305 at 4378.137 kb on - strand, within ABIE41_RS21305 at 4378.137 kb on - strand, within ABIE41_RS21305 at 4378.137 kb on - strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.138 kb on + strand, within ABIE41_RS21305 at 4378.139 kb on - strand, within ABIE41_RS21305 at 4378.139 kb on - strand, within ABIE41_RS21305 at 4378.139 kb on - strand, within ABIE41_RS21305 at 4378.139 kb on - strand, within ABIE41_RS21305 at 4378.139 kb on - strand, within ABIE41_RS21305 at 4378.139 kb on - strand, within ABIE41_RS21305 at 4378.139 kb on - strand, within ABIE41_RS21305 at 4378.139 kb on - strand, within ABIE41_RS21305 at 4378.162 kb on + strand, within ABIE41_RS21305 at 4378.163 kb on - strand, within ABIE41_RS21305 at 4378.210 kb on + strand, within ABIE41_RS21305 at 4378.211 kb on - strand, within ABIE41_RS21305 at 4378.211 kb on - strand, within ABIE41_RS21305 at 4378.211 kb on - strand, within ABIE41_RS21305 at 4378.246 kb on + strand, within ABIE41_RS21305 at 4378.247 kb on - strand, within ABIE41_RS21305 at 4378.447 kb on + strand at 4378.580 kb on + strand at 4378.580 kb on + strand at 4378.581 kb on - strand at 4378.581 kb on - strand at 4378.582 kb on + strand at 4378.582 kb on + strand at 4378.582 kb on + strand at 4378.582 kb on + strand at 4378.583 kb on - strand at 4378.583 kb on - strand at 4378.583 kb on - strand at 4378.583 kb on - strand at 4378.583 kb on - strand at 4378.665 kb on + strand at 4378.665 kb on + strand at 4378.701 kb on + strand at 4378.701 kb on + strand at 4378.701 kb on + strand at 4378.701 kb on + strand at 4378.701 kb on + strand at 4378.701 kb on + strand at 4378.701 kb on + strand at 4378.701 kb on + strand at 4378.702 kb on - strand at 4378.702 kb on - strand at 4378.702 kb on - strand at 4378.702 kb on - strand at 4378.702 kb on - strand at 4379.145 kb on + strand, within ABIE41_RS21310 at 4379.145 kb on + strand, within ABIE41_RS21310 at 4379.146 kb on - strand, within ABIE41_RS21310 at 4379.146 kb on - strand, within ABIE41_RS21310 at 4379.322 kb on + strand, within ABIE41_RS21310 at 4379.322 kb on + strand, within ABIE41_RS21310 at 4379.322 kb on + strand, within ABIE41_RS21310 at 4379.322 kb on + strand, within ABIE41_RS21310 at 4379.322 kb on + strand, within ABIE41_RS21310 at 4379.322 kb on + strand, within ABIE41_RS21310 at 4379.322 kb on + strand, within ABIE41_RS21310 at 4379.323 kb on + strand, within ABIE41_RS21310 at 4379.323 kb on - strand, within ABIE41_RS21310 at 4379.323 kb on - strand, within ABIE41_RS21310 at 4379.323 kb on - strand, within ABIE41_RS21310 at 4379.323 kb on - strand, within ABIE41_RS21310 at 4379.323 kb on - strand, within ABIE41_RS21310 at 4379.419 kb on - strand at 4379.419 kb on - strand at 4379.419 kb on - strand at 4379.521 kb on + strand at 4379.521 kb on + strand at 4379.521 kb on + strand at 4379.522 kb on - strand at 4379.672 kb on - strand, within ABIE41_RS21315 at 4379.672 kb on - strand, within ABIE41_RS21315 at 4379.727 kb on + strand, within ABIE41_RS21315 at 4379.728 kb on - strand, within ABIE41_RS21315 at 4379.750 kb on - strand, within ABIE41_RS21315 at 4379.821 kb on - strand, within ABIE41_RS21315 at 4379.821 kb on - strand, within ABIE41_RS21315 at 4380.064 kb on + strand, within ABIE41_RS21315 at 4380.064 kb on + strand, within ABIE41_RS21315 at 4380.064 kb on + strand, within ABIE41_RS21315 at 4380.064 kb on + strand, within ABIE41_RS21315 at 4380.064 kb on + strand, within ABIE41_RS21315 at 4380.064 kb on + strand, within ABIE41_RS21315
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 4,377,814 + ABIE41_RS21305 0.63 +0.0 4,377,814 + ABIE41_RS21305 0.63 +0.1 4,377,815 - ABIE41_RS21305 0.63 +0.4 4,378,136 + ABIE41_RS21305 0.81 +0.2 4,378,136 + ABIE41_RS21305 0.81 -0.2 4,378,136 + ABIE41_RS21305 0.81 -0.2 4,378,136 + ABIE41_RS21305 0.81 -1.4 4,378,136 + ABIE41_RS21305 0.81 +0.2 4,378,136 + ABIE41_RS21305 0.81 -1.6 4,378,136 + ABIE41_RS21305 0.81 +0.3 4,378,136 + ABIE41_RS21305 0.81 +0.1 4,378,136 + ABIE41_RS21305 0.81 -0.1 4,378,136 + ABIE41_RS21305 0.81 -0.2 4,378,136 + ABIE41_RS21305 0.81 -0.2 4,378,136 + ABIE41_RS21305 0.81 -1.3 4,378,136 + ABIE41_RS21305 0.81 -0.3 4,378,136 + ABIE41_RS21305 0.81 +0.8 4,378,136 + ABIE41_RS21305 0.81 +0.2 4,378,136 + ABIE41_RS21305 0.81 -0.6 4,378,136 + ABIE41_RS21305 0.81 +0.7 4,378,137 - ABIE41_RS21305 0.81 +0.1 4,378,137 - ABIE41_RS21305 0.81 -0.1 4,378,137 - ABIE41_RS21305 0.81 +1.1 4,378,137 - ABIE41_RS21305 0.81 -0.4 4,378,137 - ABIE41_RS21305 0.81 +1.8 4,378,137 - ABIE41_RS21305 0.81 +0.5 4,378,137 - ABIE41_RS21305 0.81 +0.2 4,378,137 - ABIE41_RS21305 0.81 -0.0 4,378,137 - ABIE41_RS21305 0.81 +2.4 4,378,138 + ABIE41_RS21305 0.81 -0.9 4,378,138 + ABIE41_RS21305 0.81 -0.1 4,378,138 + ABIE41_RS21305 0.81 -0.5 4,378,138 + ABIE41_RS21305 0.81 +0.9 4,378,138 + ABIE41_RS21305 0.81 +1.1 4,378,138 + ABIE41_RS21305 0.81 +1.1 4,378,138 + ABIE41_RS21305 0.81 -0.8 4,378,138 + ABIE41_RS21305 0.81 -0.4 4,378,138 + ABIE41_RS21305 0.81 +0.3 4,378,138 + ABIE41_RS21305 0.81 +0.2 4,378,138 + ABIE41_RS21305 0.81 -0.8 4,378,138 + ABIE41_RS21305 0.81 -0.3 4,378,139 - ABIE41_RS21305 0.81 -0.1 4,378,139 - ABIE41_RS21305 0.81 +0.2 4,378,139 - ABIE41_RS21305 0.81 +0.8 4,378,139 - ABIE41_RS21305 0.81 +2.7 4,378,139 - ABIE41_RS21305 0.81 -2.8 4,378,139 - ABIE41_RS21305 0.81 +0.0 4,378,139 - ABIE41_RS21305 0.81 -1.3 4,378,139 - ABIE41_RS21305 0.81 +1.8 4,378,162 + ABIE41_RS21305 0.82 +0.0 4,378,163 - ABIE41_RS21305 0.82 -0.5 4,378,210 + ABIE41_RS21305 0.85 +0.6 4,378,211 - ABIE41_RS21305 0.85 -0.7 4,378,211 - ABIE41_RS21305 0.85 +0.3 4,378,211 - ABIE41_RS21305 0.85 +0.1 4,378,246 + ABIE41_RS21305 0.87 -0.4 4,378,247 - ABIE41_RS21305 0.87 -1.2 4,378,447 + +0.0 4,378,580 + +0.8 4,378,580 + +0.2 4,378,581 - -0.8 4,378,581 - -0.4 4,378,582 + -0.6 4,378,582 + +0.0 4,378,582 + +0.8 4,378,582 + -0.2 4,378,583 - +1.1 4,378,583 - -1.5 4,378,583 - +1.4 4,378,583 - +1.9 4,378,583 - +1.0 4,378,665 + -1.6 4,378,665 + +0.3 4,378,701 + -0.2 4,378,701 + +0.0 4,378,701 + -0.7 4,378,701 + -0.3 4,378,701 + +0.1 4,378,701 + +1.1 4,378,701 + -0.7 4,378,701 + -0.3 4,378,702 - +0.3 4,378,702 - +0.7 4,378,702 - -0.5 4,378,702 - +1.1 4,378,702 - +0.3 4,379,145 + ABIE41_RS21310 0.65 -1.9 4,379,145 + ABIE41_RS21310 0.65 +0.4 4,379,146 - ABIE41_RS21310 0.65 +0.1 4,379,146 - ABIE41_RS21310 0.65 +0.9 4,379,322 + ABIE41_RS21310 0.87 -1.1 4,379,322 + ABIE41_RS21310 0.87 +0.0 4,379,322 + ABIE41_RS21310 0.87 +0.6 4,379,322 + ABIE41_RS21310 0.87 +0.6 4,379,322 + ABIE41_RS21310 0.87 +0.2 4,379,322 + ABIE41_RS21310 0.87 +0.2 4,379,322 + ABIE41_RS21310 0.87 +1.0 4,379,323 + ABIE41_RS21310 0.87 -0.3 4,379,323 - ABIE41_RS21310 0.87 +0.3 4,379,323 - ABIE41_RS21310 0.87 -0.9 4,379,323 - ABIE41_RS21310 0.87 +0.9 4,379,323 - ABIE41_RS21310 0.87 -0.0 4,379,323 - ABIE41_RS21310 0.87 +1.7 4,379,419 - -0.2 4,379,419 - +1.1 4,379,419 - -0.7 4,379,521 + -0.9 4,379,521 + -0.1 4,379,521 + -0.2 4,379,522 - +0.2 4,379,672 - ABIE41_RS21315 0.26 +1.7 4,379,672 - ABIE41_RS21315 0.26 -0.2 4,379,727 + ABIE41_RS21315 0.32 -0.7 4,379,728 - ABIE41_RS21315 0.32 +0.2 4,379,750 - ABIE41_RS21315 0.34 -0.9 4,379,821 - ABIE41_RS21315 0.42 -0.1 4,379,821 - ABIE41_RS21315 0.42 +1.1 4,380,064 + ABIE41_RS21315 0.69 +2.9 4,380,064 + ABIE41_RS21315 0.69 +0.2 4,380,064 + ABIE41_RS21315 0.69 +0.2 4,380,064 + ABIE41_RS21315 0.69 -0.4 4,380,064 + ABIE41_RS21315 0.69 -1.2 4,380,064 + ABIE41_RS21315 0.69 -0.7
Or see this region's nucleotide sequence