Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18185

Experiment: DMSO control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS18170 and ABIE41_RS18175 are separated by 18 nucleotidesABIE41_RS18175 and ABIE41_RS18180 are separated by 144 nucleotidesABIE41_RS18180 and ABIE41_RS18185 are separated by 32 nucleotidesABIE41_RS18185 and ABIE41_RS18190 overlap by 44 nucleotides ABIE41_RS18170: ABIE41_RS18170 - PleD family two-component system response regulator, at 3,742,225 to 3,743,601 _RS18170 ABIE41_RS18175: ABIE41_RS18175 - response regulator, at 3,743,620 to 3,743,991 _RS18175 ABIE41_RS18180: ABIE41_RS18180 - DUF3572 domain-containing protein, at 3,744,136 to 3,744,426 _RS18180 ABIE41_RS18185: ABIE41_RS18185 - DNA polymerase IV, at 3,744,459 to 3,745,781 _RS18185 ABIE41_RS18190: ABIE41_RS18190 - cell envelope integrity EipB family protein, at 3,745,738 to 3,746,574 _RS18190 Position (kb) 3744 3745 3746Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3744.077 kb on + strandat 3744.077 kb on + strandat 3744.077 kb on + strandat 3744.078 kb on - strandat 3744.597 kb on + strand, within ABIE41_RS18185at 3744.597 kb on + strand, within ABIE41_RS18185at 3744.598 kb on - strand, within ABIE41_RS18185at 3744.598 kb on - strand, within ABIE41_RS18185at 3744.598 kb on - strand, within ABIE41_RS18185at 3744.598 kb on - strand, within ABIE41_RS18185at 3744.598 kb on - strand, within ABIE41_RS18185at 3744.598 kb on - strand, within ABIE41_RS18185at 3744.690 kb on + strand, within ABIE41_RS18185at 3744.691 kb on - strand, within ABIE41_RS18185at 3744.691 kb on - strand, within ABIE41_RS18185at 3744.691 kb on - strand, within ABIE41_RS18185at 3744.691 kb on - strand, within ABIE41_RS18185at 3744.705 kb on + strand, within ABIE41_RS18185at 3744.705 kb on + strand, within ABIE41_RS18185at 3744.706 kb on - strand, within ABIE41_RS18185at 3744.706 kb on - strand, within ABIE41_RS18185at 3744.789 kb on + strand, within ABIE41_RS18185at 3744.789 kb on + strand, within ABIE41_RS18185at 3744.789 kb on + strand, within ABIE41_RS18185at 3744.790 kb on - strand, within ABIE41_RS18185at 3744.790 kb on - strand, within ABIE41_RS18185at 3744.790 kb on - strand, within ABIE41_RS18185at 3745.740 kb on - strandat 3745.740 kb on - strandat 3745.762 kb on + strandat 3745.844 kb on + strand, within ABIE41_RS18190at 3745.845 kb on - strand, within ABIE41_RS18190at 3745.866 kb on - strand, within ABIE41_RS18190at 3745.866 kb on - strand, within ABIE41_RS18190at 3745.901 kb on + strand, within ABIE41_RS18190at 3746.039 kb on + strand, within ABIE41_RS18190at 3746.039 kb on + strand, within ABIE41_RS18190at 3746.040 kb on - strand, within ABIE41_RS18190at 3746.040 kb on - strand, within ABIE41_RS18190at 3746.357 kb on + strand, within ABIE41_RS18190at 3746.357 kb on + strand, within ABIE41_RS18190at 3746.453 kb on + strand, within ABIE41_RS18190at 3746.453 kb on + strand, within ABIE41_RS18190at 3746.453 kb on + strand, within ABIE41_RS18190at 3746.453 kb on + strand, within ABIE41_RS18190at 3746.453 kb on + strand, within ABIE41_RS18190at 3746.454 kb on - strand, within ABIE41_RS18190at 3746.611 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
remove
3,744,077 + +0.4
3,744,077 + +0.2
3,744,077 + -0.7
3,744,078 - -4.6
3,744,597 + ABIE41_RS18185 0.10 +0.3
3,744,597 + ABIE41_RS18185 0.10 -0.0
3,744,598 - ABIE41_RS18185 0.11 +0.3
3,744,598 - ABIE41_RS18185 0.11 +1.8
3,744,598 - ABIE41_RS18185 0.11 -1.1
3,744,598 - ABIE41_RS18185 0.11 -1.7
3,744,598 - ABIE41_RS18185 0.11 +0.8
3,744,598 - ABIE41_RS18185 0.11 +0.0
3,744,690 + ABIE41_RS18185 0.17 +0.6
3,744,691 - ABIE41_RS18185 0.18 +1.0
3,744,691 - ABIE41_RS18185 0.18 -0.4
3,744,691 - ABIE41_RS18185 0.18 -0.3
3,744,691 - ABIE41_RS18185 0.18 +1.4
3,744,705 + ABIE41_RS18185 0.19 +1.6
3,744,705 + ABIE41_RS18185 0.19 +0.3
3,744,706 - ABIE41_RS18185 0.19 +0.5
3,744,706 - ABIE41_RS18185 0.19 +0.0
3,744,789 + ABIE41_RS18185 0.25 -0.3
3,744,789 + ABIE41_RS18185 0.25 -0.0
3,744,789 + ABIE41_RS18185 0.25 +0.1
3,744,790 - ABIE41_RS18185 0.25 -0.7
3,744,790 - ABIE41_RS18185 0.25 +0.8
3,744,790 - ABIE41_RS18185 0.25 -0.9
3,745,740 - +1.0
3,745,740 - +0.1
3,745,762 + +0.7
3,745,844 + ABIE41_RS18190 0.13 -0.1
3,745,845 - ABIE41_RS18190 0.13 -0.6
3,745,866 - ABIE41_RS18190 0.15 +0.3
3,745,866 - ABIE41_RS18190 0.15 -0.7
3,745,901 + ABIE41_RS18190 0.19 -2.0
3,746,039 + ABIE41_RS18190 0.36 -0.6
3,746,039 + ABIE41_RS18190 0.36 +1.0
3,746,040 - ABIE41_RS18190 0.36 -0.9
3,746,040 - ABIE41_RS18190 0.36 -2.0
3,746,357 + ABIE41_RS18190 0.74 -0.5
3,746,357 + ABIE41_RS18190 0.74 -0.5
3,746,453 + ABIE41_RS18190 0.85 +0.6
3,746,453 + ABIE41_RS18190 0.85 -0.1
3,746,453 + ABIE41_RS18190 0.85 -1.7
3,746,453 + ABIE41_RS18190 0.85 +0.2
3,746,453 + ABIE41_RS18190 0.85 -0.8
3,746,454 - ABIE41_RS18190 0.86 -0.9
3,746,611 - +0.8

Or see this region's nucleotide sequence