Strain Fitness in Bosea sp. OAE506 around ABIE41_RS18150

Experiment: DMSO control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS18140 and ABIE41_RS18145 overlap by 1 nucleotidesABIE41_RS18145 and ABIE41_RS18150 overlap by 4 nucleotidesABIE41_RS18150 and ABIE41_RS18155 are separated by 156 nucleotidesABIE41_RS18155 and ABIE41_RS18160 are separated by 138 nucleotides ABIE41_RS18140: ABIE41_RS18140 - ribonuclease R, at 3,737,172 to 3,739,532 _RS18140 ABIE41_RS18145: ABIE41_RS18145 - DUF983 domain-containing protein, at 3,739,532 to 3,739,978 _RS18145 ABIE41_RS18150: ABIE41_RS18150 - NUDIX hydrolase, at 3,739,975 to 3,740,709 _RS18150 ABIE41_RS18155: ABIE41_RS18155 - 50S ribosomal protein L33, at 3,740,866 to 3,741,033 _RS18155 ABIE41_RS18160: ABIE41_RS18160 - BrnA antitoxin family protein, at 3,741,172 to 3,741,405 _RS18160 Position (kb) 3739 3740 3741Strain fitness (log2 ratio) -2 -1 0 1at 3739.236 kb on + strand, within ABIE41_RS18140at 3739.236 kb on + strand, within ABIE41_RS18140at 3739.237 kb on - strand, within ABIE41_RS18140at 3739.239 kb on + strand, within ABIE41_RS18140at 3739.239 kb on + strand, within ABIE41_RS18140at 3739.240 kb on - strand, within ABIE41_RS18140at 3739.550 kb on - strandat 3739.727 kb on + strand, within ABIE41_RS18145at 3739.727 kb on + strand, within ABIE41_RS18145at 3739.727 kb on + strand, within ABIE41_RS18145at 3739.728 kb on - strand, within ABIE41_RS18145at 3739.788 kb on - strand, within ABIE41_RS18145at 3740.122 kb on - strand, within ABIE41_RS18150at 3740.140 kb on + strand, within ABIE41_RS18150at 3740.669 kb on - strandat 3740.669 kb on - strandat 3740.926 kb on + strand, within ABIE41_RS18155at 3740.981 kb on - strand, within ABIE41_RS18155at 3741.404 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DMSO control
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3,739,236 + ABIE41_RS18140 0.87 +0.7
3,739,236 + ABIE41_RS18140 0.87 -0.2
3,739,237 - ABIE41_RS18140 0.87 +1.0
3,739,239 + ABIE41_RS18140 0.88 +0.2
3,739,239 + ABIE41_RS18140 0.88 +0.6
3,739,240 - ABIE41_RS18140 0.88 +0.1
3,739,550 - -0.6
3,739,727 + ABIE41_RS18145 0.44 -0.7
3,739,727 + ABIE41_RS18145 0.44 -0.7
3,739,727 + ABIE41_RS18145 0.44 -0.1
3,739,728 - ABIE41_RS18145 0.44 -1.3
3,739,788 - ABIE41_RS18145 0.57 -0.3
3,740,122 - ABIE41_RS18150 0.20 -0.3
3,740,140 + ABIE41_RS18150 0.22 -0.7
3,740,669 - +1.4
3,740,669 - +0.3
3,740,926 + ABIE41_RS18155 0.36 -2.2
3,740,981 - ABIE41_RS18155 0.68 +0.4
3,741,404 - +0.2

Or see this region's nucleotide sequence