Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18140 and ABIE41_RS18145 overlap by 1 nucleotides ABIE41_RS18145 and ABIE41_RS18150 overlap by 4 nucleotides ABIE41_RS18150 and ABIE41_RS18155 are separated by 156 nucleotides ABIE41_RS18155 and ABIE41_RS18160 are separated by 138 nucleotides
ABIE41_RS18140: ABIE41_RS18140 - ribonuclease R, at 3,737,172 to 3,739,532
_RS18140
ABIE41_RS18145: ABIE41_RS18145 - DUF983 domain-containing protein, at 3,739,532 to 3,739,978
_RS18145
ABIE41_RS18150: ABIE41_RS18150 - NUDIX hydrolase, at 3,739,975 to 3,740,709
_RS18150
ABIE41_RS18155: ABIE41_RS18155 - 50S ribosomal protein L33, at 3,740,866 to 3,741,033
_RS18155
ABIE41_RS18160: ABIE41_RS18160 - BrnA antitoxin family protein, at 3,741,172 to 3,741,405
_RS18160
Position (kb)
3739
3740
3741 Strain fitness (log2 ratio)
-2
-1
0
1 at 3739.236 kb on + strand, within ABIE41_RS18140 at 3739.236 kb on + strand, within ABIE41_RS18140 at 3739.237 kb on - strand, within ABIE41_RS18140 at 3739.239 kb on + strand, within ABIE41_RS18140 at 3739.239 kb on + strand, within ABIE41_RS18140 at 3739.240 kb on - strand, within ABIE41_RS18140 at 3739.550 kb on - strand at 3739.727 kb on + strand, within ABIE41_RS18145 at 3739.727 kb on + strand, within ABIE41_RS18145 at 3739.727 kb on + strand, within ABIE41_RS18145 at 3739.728 kb on - strand, within ABIE41_RS18145 at 3739.788 kb on - strand, within ABIE41_RS18145 at 3740.122 kb on - strand, within ABIE41_RS18150 at 3740.140 kb on + strand, within ABIE41_RS18150 at 3740.669 kb on - strand at 3740.669 kb on - strand at 3740.926 kb on + strand, within ABIE41_RS18155 at 3740.981 kb on - strand, within ABIE41_RS18155 at 3741.404 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 3,739,236 + ABIE41_RS18140 0.87 +0.7 3,739,236 + ABIE41_RS18140 0.87 -0.2 3,739,237 - ABIE41_RS18140 0.87 +1.0 3,739,239 + ABIE41_RS18140 0.88 +0.2 3,739,239 + ABIE41_RS18140 0.88 +0.6 3,739,240 - ABIE41_RS18140 0.88 +0.1 3,739,550 - -0.6 3,739,727 + ABIE41_RS18145 0.44 -0.7 3,739,727 + ABIE41_RS18145 0.44 -0.7 3,739,727 + ABIE41_RS18145 0.44 -0.1 3,739,728 - ABIE41_RS18145 0.44 -1.3 3,739,788 - ABIE41_RS18145 0.57 -0.3 3,740,122 - ABIE41_RS18150 0.20 -0.3 3,740,140 + ABIE41_RS18150 0.22 -0.7 3,740,669 - +1.4 3,740,669 - +0.3 3,740,926 + ABIE41_RS18155 0.36 -2.2 3,740,981 - ABIE41_RS18155 0.68 +0.4 3,741,404 - +0.2
Or see this region's nucleotide sequence